HHsearch alignment for GI: 254780606 and conserved domain: cd00984
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.84 E-value=0.00013 Score=50.66 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=68.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEE-------CCCCCCCCEE--EEEEECHHHHHHHHHH
Q ss_conf 846997078753447999999999985680110799972342100-------0125775200--0044441787689999
Q gi|254780606|r 413 PHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLEL-------SVYDGIPHLL--TPVVTNPKKAVMALKW 483 (744)
Q Consensus 413 PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~-------~~~~~~ph~~--~~v~~~~~~~~~~l~~ 483 (744)
T Consensus 14 ~L~vi~a~~g~GKS~~~~~la~~~a~~~---g~~V~~~SlEm~~~~~~~R~~s~~~~i~~~~i~~~~~~~-~~-~~~~~~ 88 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQ---GKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTGSLSD-ED-WERLAE 88 (242)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHC---CCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHCCCCCH-HH-HHHHHH
T ss_conf 1899996899999999999999999977---995999933353889999999998297745530265227-99-999999
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC------HHHHHHHHHHH
Q ss_conf 998667699999980778679999988642026776665432338679998445687675310------35899999999
Q gi|254780606|r 484 AVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG------KEIEGAIQRLA 557 (744)
Q Consensus 484 ~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~------~~~e~~~~~la 557 (744)
T Consensus 89 ~~~~~~~~~l~i~d~~~~t~~~i~~~ir~~~~~~----~------~-~~vvvDyl-ql~~~~~~~~~~~~~i~~i~~~Lk 156 (242)
T cd00984 89 AIGELKELPIYIDDSSSLTVSDIRSRARRLKKEH----G------L-GLIVIDYL-QLMSGSKKKGNRQQEVAEISRSLK 156 (242)
T ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC----C------C-CEEEEEHH-HHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9998616988996699999999999999998836----9------9-89998269-854677766579999999999999
Q ss_pred HHHHCCEEEEEEEECCC
Q ss_conf 96420135899985165
Q gi|254780606|r 558 QMARAAGIHLIMATQRP 574 (744)
Q Consensus 558 ~~~ra~GihlilatQrp 574 (744)
T Consensus 157 ~lA~e~~v~Vi~~sQln 173 (242)
T cd00984 157 LLAKELNVPVIALSQLS 173 (242)
T ss_pred HHHHHHCCEEEEEECCC
T ss_conf 99999799399984678