HHsearch alignment for GI: 254780606 and conserved domain: cd01120
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.54 E-value=0.0034 Score=40.95 Aligned_cols=139 Identities=25% Similarity=0.322 Sum_probs=73.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCC--CEECC-------CCCCCCEEEEEEECHHHHHHHHHHH
Q ss_conf 46997078753447999999999985680110799972342--10001-------2577520000444417876899999
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKM--LELSV-------YDGIPHLLTPVVTNPKKAVMALKWA 484 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~--~~~~~-------~~~~ph~~~~v~~~~~~~~~~l~~~ 484 (744)
T Consensus 1 ~~li~g~~g~GKttl~~~~~~~~~~----~~~~~~~~~~ee~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 74 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT----KGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLL-- 74 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH----CCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHH--
T ss_conf 9899989999899999999999876----3997999986664489999999862246713079993599976999999--
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHC-------CHHHHHHHHHHH
Q ss_conf 9866769999998077867999998864202677666543233867999844568767531-------035899999999
Q gi|254780606|r 485 VREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVA-------GKEIEGAIQRLA 557 (744)
Q Consensus 485 ~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~-------~~~~e~~~~~la 557 (744)
T Consensus 75 --~~~~~---~~~----------------------------~~~~-vliiiDSit~~~~a~~e~~~g~~~~v~~~~~~L~ 120 (165)
T cd01120 75 --SKAER---LRE----------------------------RGGD-DLIILDELTRLVRALREIREGYPGELDEELRELL 120 (165)
T ss_pred --HHHHH---HHH----------------------------CCCC-EEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf --99999---998----------------------------6997-7999928899887740015886789999999999
Q ss_pred HHHHCCEEEEEEEECCCCCCCCH--------HHHHHCCCCEEEE
Q ss_conf 96420135899985165444414--------6788505630572
Q gi|254780606|r 558 QMARAAGIHLIMATQRPSVDVIT--------GTIKANFPIRISF 593 (744)
Q Consensus 558 ~~~ra~GihlilatQrp~~~vi~--------~~ik~n~~~ri~~ 593 (744)
T Consensus 121 ~~Ak~~~itvi~i~~v~~-d~~~~~~~~~g~~~l~~~~d~~i~L 163 (165)
T cd01120 121 ERARKGGVTVIFTLQVPS-GDKGDPRLTRGAQNLEDIADTVIVL 163 (165)
T ss_pred HHHHCCCCEEEEEEEEEC-CCCCCCCCCCHHHHHHHHCCEEEEE
T ss_conf 999779828999998433-7789977253888883642669998