HHsearch alignment for GI: 254780606 and conserved domain: cd01122

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.65  E-value=0.0002  Score=49.39  Aligned_cols=143  Identities=20%  Similarity=0.282  Sum_probs=71.0

Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEEC-------CCCCCC-CEEEEEEECHHHHHHHHHHH
Q ss_conf             8469970787534479999999999856801107999723421000-------125775-20000444417876899999
Q gi|254780606|r  413 PHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELS-------VYDGIP-HLLTPVVTNPKKAVMALKWA  484 (744)
Q Consensus       413 PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~-------~~~~~p-h~~~~v~~~~~~~~~~l~~~  484 (744)
T Consensus        31 eL~viaarpg~GKT~f~~~~a~~~~~~~---g~~vl~~SlEm~~~~~~~Rlls~~~g~~~~~~~~~~~~~~---e~~~~~  104 (271)
T cd01122          31 ELIILTAGTGVGKTTFLREYALDLITQH---GVRVGTISLEEPVVRTARRLLGQYAGKRLHLPDTVFIYTL---EEFDAA  104 (271)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHC---CCEEEEEECCCCHHHHHHHHHHHHHCCCHHHCCCCCCCHH---HHHHHH
T ss_conf             0899996899869999999999999976---9908999704999999999999982997110344677809---999999


Q ss_pred             HHHHHH--HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC------HHHHHHHHHH
Q ss_conf             986676--99999980778679999988642026776665432338679998445687675310------3589999999
Q gi|254780606|r  485 VREMEE--RYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG------KEIEGAIQRL  556 (744)
Q Consensus       485 ~~em~~--r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~------~~~e~~~~~l  556 (744)
T Consensus       105 ~~~~~~~~~l~i~d~~~~~~~~~i~~~ir~~~~~~----~~-------~~vvIDylqll~~~~~~~~d~~~~i~~i~~~L  173 (271)
T cd01122         105 FDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSH----GI-------QHIIIDNLSIMVSDERASGDERKALDEIMTKL  173 (271)
T ss_pred             HHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHC----CC-------CEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             99970799808878999988999999999999828----99-------88998317850367867731899999999999


Q ss_pred             HHHHHCCEEEEEEEEC
Q ss_conf             9964201358999851
Q gi|254780606|r  557 AQMARAAGIHLIMATQ  572 (744)
Q Consensus       557 a~~~ra~GihlilatQ  572 (744)
T Consensus       174 k~lAke~~v~Vi~lsQ  189 (271)
T cd01122         174 RGFATEHGIHITLVSH  189 (271)
T ss_pred             HHHHHHHCCCEEEEEC
T ss_conf             9999997997799952