HHsearch alignment for GI: 254780606 and conserved domain: cd01123
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.61 E-value=0.063 Score=32.20 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=26.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCC--HHHEEEEEECCCC
Q ss_conf 699707875344799999999998568--0110799972342
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLR--PDECRMIMVDPKM 454 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~--p~~~~~~liD~k~ 454 (744)
T Consensus 22 tEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdtE~ 63 (235)
T cd01123 22 TEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 999999998499999999999842475367896299995367