HHsearch alignment for GI: 254780606 and conserved domain: cd01126
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=97.16 E-value=0.00048 Score=46.72 Aligned_cols=69 Identities=20% Similarity=0.314 Sum_probs=48.3
Q ss_pred EEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCC-CC-----CHHHHHHCCCCEEEEECCCHHHCCH
Q ss_conf 79998445687675310358999999999642013589998516544-44-----1467885056305720368111003
Q gi|254780606|r 530 YIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSV-DV-----ITGTIKANFPIRISFQVTSKIDSRT 603 (744)
Q Consensus 530 ~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~-~v-----i~~~ik~n~~~ri~~~v~~~~dsr~ 603 (744)
T Consensus 264 ~v~~~lDEf~nl~-----~ip-~l~~~ls~~Rs~Gi~~~~~~Qs~~Ql~~~YG~~~~~~i~~n~~~~i~~~~~d~~ta~~ 337 (384)
T cd01126 264 RVLFLLDEFPLLG-----KLE-TFEKAIAIMAGYGIRLLLIFQSLAQLEGTYGDAGASSFLSNCGVRLFFAVNDYETARY 337 (384)
T ss_pred CEEEEEECHHHCC-----CHH-HHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHH
T ss_conf 5599986611017-----738-8999999874289199999954999998855617999996078499925899899999
Q ss_pred H
Q ss_conf 2
Q gi|254780606|r 604 I 604 (744)
Q Consensus 604 i 604 (744)
T Consensus 338 ~ 338 (384)
T cd01126 338 I 338 (384)
T ss_pred H
T ss_conf 9