HHsearch alignment for GI: 254780606 and conserved domain: cd01128
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.28 E-value=0.24 Score=28.19 Aligned_cols=53 Identities=9% Similarity=0.141 Sum_probs=41.8
Q ss_pred CHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCC
Q ss_conf 20114846997078753447999999999985680110799972342100012
Q gi|254780606|r 408 DLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVY 460 (744)
Q Consensus 408 dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~ 460 (744)
T Consensus 12 pigkGQR~gI~g~~gvGKT~Ll~~i~~~~~~~~~~~~~v~~lIGER~rEv~e~ 64 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDM 64 (249)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHH
T ss_conf 61678677887899988999999999999985898499999971657999999