HHsearch alignment for GI: 254780606 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.94 E-value=0.0011 Score=44.36 Aligned_cols=39 Identities=33% Similarity=0.620 Sum_probs=28.2
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEE-CCCC
Q ss_conf 1484699707875344799999999998568011079997-2342
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMV-DPKM 454 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~li-D~k~ 454 (744)
T Consensus 24 ~~~nIlIsG~tGSGKTTll~al~~~i-----~~~~rivtiEd~~E 63 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFI-----PPDERIITIEDTAE 63 (186)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHC-----CCCCCEEEECCCHH
T ss_conf 59989998999998999999999613-----34564598415354