HHsearch alignment for GI: 254780606 and conserved domain: cd01394

>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

Probab=95.71  E-value=0.1  Score=30.75  Aligned_cols=38  Identities=16%  Similarity=0.200  Sum_probs=26.2

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf             484699707875344799999999998568011079997234
Q gi|254780606|r  412 MPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK  453 (744)
Q Consensus       412 ~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k  453 (744)
T Consensus        19 G~it~i~G~pG~GKStl~lq~a~~~~----~~g~~v~YidtE   56 (218)
T cd01394          19 GTVTQVYGPPGTGKTNIAIQLAVETA----GQGKKVAYIDTE   56 (218)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH----HCCCEEEEEECC
T ss_conf             87999989999849999999999986----369869999665