HHsearch alignment for GI: 254780606 and conserved domain: cd03224
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.14 E-value=0.11 Score=30.42 Aligned_cols=45 Identities=22% Similarity=0.418 Sum_probs=29.0
Q ss_pred CCCEEECC----HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE
Q ss_conf 88732112----01148469970787534479999999999856801107999
Q gi|254780606|r 401 SGESVIAD----LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM 449 (744)
Q Consensus 401 ~g~~~~~d----l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l 449 (744)
T Consensus 11 g~~~~L~~vs~~v~~Gei~~liG~nGaGKSTLl~~-i~Gl~---~p~~G~I~~ 59 (222)
T cd03224 11 GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKT-IMGLL---PPRSGSIRF 59 (222)
T ss_pred CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHH-HHCCC---CCCCEEEEE
T ss_conf 99999814089988998999999999859999999-97798---899609999