HHsearch alignment for GI: 254780606 and conserved domain: cd03246
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.23 E-value=0.046 Score=33.16 Aligned_cols=138 Identities=20% Similarity=0.244 Sum_probs=62.7
Q ss_pred CCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHH
Q ss_conf 87321120----11484699707875344799999999998568011079997234210001257752000044441787
Q gi|254780606|r 402 GESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKA 477 (744)
Q Consensus 402 g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~ 477 (744)
T Consensus 14 ~~~vL~~i~l~i~~G~~vaIvG~sGsGKSTLl~l-l~gl~-~p~~G~i~i~g~~~~~~~~~~~~~--~-i~~v~Q~~~lf 88 (173)
T cd03246 14 EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARL-ILGLL-RPTSGRVRLDGADISQWDPNELGD--H-VGYLPQDDELF 88 (173)
T ss_pred CCCCEECEEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC-CCCCCEEEECCEECCCCCHHHHHC--C-EEEEECCCEEC
T ss_conf 9864547699985999999999999809999999-96666-679998999999933289989842--0-89990888367
Q ss_pred HHHHH-H-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 68999-9-998667699999980778679999988642026776665432338679998445687675310358999999
Q gi|254780606|r 478 VMALK-W-AVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQR 555 (744)
Q Consensus 478 ~~~l~-~-~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~ 555 (744)
T Consensus 89 ~~ti~eNiLSGGQkQRva-lAR-----------------al~---------~~p~-ililDEpts~LD---~~~e~~i~~ 137 (173)
T cd03246 89 SGSIAENILSGGQRQRLG-LAR-----------------ALY---------GNPR-ILVLDEPNSHLD---VEGERALNQ 137 (173)
T ss_pred CCCHHHHCCCHHHHHHHH-HHH-----------------HHH---------CCCC-EEEEECCCCCCC---HHHHHHHHH
T ss_conf 775899767699999999-999-----------------982---------7999-999968766899---899999999
Q ss_pred HHHHHHCCEEEEEEEECCCC
Q ss_conf 99964201358999851654
Q gi|254780606|r 556 LAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 556 la~~~ra~GihlilatQrp~ 575 (744)
T Consensus 138 ~l~~l~~~~~Tvi~vtH~~~ 157 (173)
T cd03246 138 AIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred HHHHHHHCCCEEEEECCCHH
T ss_conf 99978648989999847999