HHsearch alignment for GI: 254780606 and conserved domain: cd03246

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.23  E-value=0.046  Score=33.16  Aligned_cols=138  Identities=20%  Similarity=0.244  Sum_probs=62.7

Q ss_pred             CCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHH
Q ss_conf             87321120----11484699707875344799999999998568011079997234210001257752000044441787
Q gi|254780606|r  402 GESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKA  477 (744)
Q Consensus       402 g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~  477 (744)
T Consensus        14 ~~~vL~~i~l~i~~G~~vaIvG~sGsGKSTLl~l-l~gl~-~p~~G~i~i~g~~~~~~~~~~~~~--~-i~~v~Q~~~lf   88 (173)
T cd03246          14 EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARL-ILGLL-RPTSGRVRLDGADISQWDPNELGD--H-VGYLPQDDELF   88 (173)
T ss_pred             CCCCEECEEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC-CCCCCEEEECCEECCCCCHHHHHC--C-EEEEECCCEEC
T ss_conf             9864547699985999999999999809999999-96666-679998999999933289989842--0-89990888367


Q ss_pred             HHHHH-H-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             68999-9-998667699999980778679999988642026776665432338679998445687675310358999999
Q gi|254780606|r  478 VMALK-W-AVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQR  555 (744)
Q Consensus       478 ~~~l~-~-~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~  555 (744)
T Consensus        89 ~~ti~eNiLSGGQkQRva-lAR-----------------al~---------~~p~-ililDEpts~LD---~~~e~~i~~  137 (173)
T cd03246          89 SGSIAENILSGGQRQRLG-LAR-----------------ALY---------GNPR-ILVLDEPNSHLD---VEGERALNQ  137 (173)
T ss_pred             CCCHHHHCCCHHHHHHHH-HHH-----------------HHH---------CCCC-EEEEECCCCCCC---HHHHHHHHH
T ss_conf             775899767699999999-999-----------------982---------7999-999968766899---899999999


Q ss_pred             HHHHHHCCEEEEEEEECCCC
Q ss_conf             99964201358999851654
Q gi|254780606|r  556 LAQMARAAGIHLIMATQRPS  575 (744)
Q Consensus       556 la~~~ra~GihlilatQrp~  575 (744)
T Consensus       138 ~l~~l~~~~~Tvi~vtH~~~  157 (173)
T cd03246         138 AIAALKAAGATRIVIAHRPE  157 (173)
T ss_pred             HHHHHHHCCCEEEEECCCHH
T ss_conf             99978648989999847999