HHsearch alignment for GI: 254780606 and conserved domain: cd03262
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.89 E-value=0.01 Score=37.65 Aligned_cols=148 Identities=21% Similarity=0.296 Sum_probs=74.6
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC---------------CCEECCCCCCCCEEEE
Q ss_conf 2112011484699707875344799999999998568011079997234---------------2100012577520000
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK---------------MLELSVYDGIPHLLTP 469 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k---------------~~~~~~~~~~ph~~~~ 469 (744)
T Consensus 19 vsl~i~~Ge~~~ivGpSGsGKSTLL~~-i~gL~---~p~~G~i~i~g~~i~~~~~~~~~~rr~iG~VFQ~~~L~p~l--- 91 (213)
T cd03262 19 IDLTVKKGEVVVIIGPSGSGKSTLLRC-INLLE---EPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHL--- 91 (213)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCEEEEECCEECCCCHHHHHHHHCCCEEEECCCCCCCCC---
T ss_conf 075988998999999998449999999-98199---99864999999999998156999867827996798758999---
Q ss_pred EEECHHHHHHHHHHH----HHHHHHH-HHHHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEH
Q ss_conf 444417876899999----9866769-99999807786799---------999886420267766654323386799984
Q gi|254780606|r 470 VVTNPKKAVMALKWA----VREMEER-YRKMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIV 535 (744)
Q Consensus 470 v~~~~~~~~~~l~~~----~~em~~r-~~~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvvi 535 (744)
T Consensus 92 --tv~eNV~~~l~~~~~~~~~e~~~~a~~~L~~vgL~~~~~~~P~~LSGGqqQRVAIARALa---------~~P~i-lL~ 159 (213)
T cd03262 92 --TVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA---------MNPKV-MLF 159 (213)
T ss_pred --CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCCHHHHHHHHHHHHC---------CCCCE-EEE
T ss_conf --199999999999769999999999999998689978874994446929999999999963---------79999-997
Q ss_pred HH-HHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 45-68767531035899999999964201358999851654
Q gi|254780606|r 536 DE-MADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 536 DE-~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
T Consensus 160 DEPts~LD~~~~~~i~~ll~~l~---~~-g~T~i~VTHD~~ 196 (213)
T cd03262 160 DEPTSALDPELVGEVLDVMKDLA---EE-GMTMVVVTHEMG 196 (213)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH---HC-CCEEEEECCCHH
T ss_conf 08888779899999999999998---62-999999998999