HHsearch alignment for GI: 254780606 and conserved domain: cd03262

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.89  E-value=0.01  Score=37.65  Aligned_cols=148  Identities=21%  Similarity=0.296  Sum_probs=74.6

Q ss_pred             EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC---------------CCEECCCCCCCCEEEE
Q ss_conf             2112011484699707875344799999999998568011079997234---------------2100012577520000
Q gi|254780606|r  405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK---------------MLELSVYDGIPHLLTP  469 (744)
Q Consensus       405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k---------------~~~~~~~~~~ph~~~~  469 (744)
T Consensus        19 vsl~i~~Ge~~~ivGpSGsGKSTLL~~-i~gL~---~p~~G~i~i~g~~i~~~~~~~~~~rr~iG~VFQ~~~L~p~l---   91 (213)
T cd03262          19 IDLTVKKGEVVVIIGPSGSGKSTLLRC-INLLE---EPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHL---   91 (213)
T ss_pred             EEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCEEEEECCEECCCCHHHHHHHHCCCEEEECCCCCCCCC---
T ss_conf             075988998999999998449999999-98199---99864999999999998156999867827996798758999---


Q ss_pred             EEECHHHHHHHHHHH----HHHHHHH-HHHHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEH
Q ss_conf             444417876899999----9866769-99999807786799---------999886420267766654323386799984
Q gi|254780606|r  470 VVTNPKKAVMALKWA----VREMEER-YRKMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIV  535 (744)
Q Consensus       470 v~~~~~~~~~~l~~~----~~em~~r-~~~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvvi  535 (744)
T Consensus        92 --tv~eNV~~~l~~~~~~~~~e~~~~a~~~L~~vgL~~~~~~~P~~LSGGqqQRVAIARALa---------~~P~i-lL~  159 (213)
T cd03262          92 --TVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA---------MNPKV-MLF  159 (213)
T ss_pred             --CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCCHHHHHHHHHHHHC---------CCCCE-EEE
T ss_conf             --199999999999769999999999999998689978874994446929999999999963---------79999-997


Q ss_pred             HH-HHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf             45-68767531035899999999964201358999851654
Q gi|254780606|r  536 DE-MADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS  575 (744)
Q Consensus       536 DE-~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~  575 (744)
T Consensus       160 DEPts~LD~~~~~~i~~ll~~l~---~~-g~T~i~VTHD~~  196 (213)
T cd03262         160 DEPTSALDPELVGEVLDVMKDLA---EE-GMTMVVVTHEMG  196 (213)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHH---HC-CCEEEEECCCHH
T ss_conf             08888779899999999999998---62-999999998999