HHsearch alignment for GI: 254780606 and conserved domain: cd03271

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.19  E-value=0.11  Score=30.61  Aligned_cols=34  Identities=32%  Similarity=0.358  Sum_probs=25.4

Q ss_pred             EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             2112011484699707875344799999999998
Q gi|254780606|r  405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLY  438 (744)
Q Consensus       405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~  438 (744)
T Consensus        14 vsl~i~~G~~~aIiG~sGsGKSTLl~~~L~~~~~   47 (261)
T cd03271          14 IDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALA   47 (261)
T ss_pred             EEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             5889889999999879998699999999888541