HHsearch alignment for GI: 254780606 and conserved domain: cd03279
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=94.61 E-value=0.046 Score=33.13 Aligned_cols=44 Identities=27% Similarity=0.456 Sum_probs=31.5
Q ss_pred CCCCCEEECCHHH---CCCEEEEECCCCCHHHHHHHHHHHHHHHCCHH
Q ss_conf 5788732112011---48469970787534479999999999856801
Q gi|254780606|r 399 TISGESVIADLAN---MPHILVAGTTGSGKSVAINTMIMSLLYRLRPD 443 (744)
Q Consensus 399 ~~~g~~~~~dl~~---~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~ 443 (744)
T Consensus 12 ~~y~g~~~IDF~~~~~~~lflI~G~nGsGKSTIlDAI~~aL-YGk~~r 58 (213)
T cd03279 12 GPFREEQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYAL-YGKTPR 58 (213)
T ss_pred CCCCCCEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCC
T ss_conf 04589717848767878889998899997889999999998-388823