HHsearch alignment for GI: 254780606 and conserved domain: cd03289

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.94  E-value=0.043  Score=33.33  Aligned_cols=195  Identities=12%  Similarity=0.130  Sum_probs=83.9

Q ss_pred             EEECCCCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCC-------CCC
Q ss_conf             42057887321120----1148469970787534479999999999856801107999723421000125-------775
Q gi|254780606|r  396 LGKTISGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYD-------GIP  464 (744)
Q Consensus       396 ~g~~~~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~-------~~p  464 (744)
T Consensus        10 ~~Y~~~~~~vL~~isf~I~~Ge~vaIvG~sGsGKSTLl~lL~-gl~~--~~G~I~idg~~i~~~~~~~~r~~i~~vpQ~~   86 (275)
T cd03289          10 AKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLN--TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKV   86 (275)
T ss_pred             EEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHH-HHCC--CCCEEEECCEECCCCCHHHHHHHEEEECCCC
T ss_conf             996899966242507998799999999999997999999996-0357--8953999988067368999976389966556


Q ss_pred             CEEEEEE-ECH--------HHHHHHHHHH-----HHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             2000044-441--------7876899999-----9866769999998077867-99999886420267766654323386
Q gi|254780606|r  465 HLLTPVV-TNP--------KKAVMALKWA-----VREMEERYRKMSHLSVRNI-KSYNERISTMYGEKPQGCGDDMRPMP  529 (744)
Q Consensus       465 h~~~~v~-~~~--------~~~~~~l~~~-----~~em~~r~~~~~~~~~~~i-~~~n~~~~~~~~~~~~~~~~~~~~~p  529 (744)
T Consensus        87 ~lf~~Ti~eNl~~~~~~~~~~i~~~~~~~~l~~~i~~lp~~ld~~~~~~g~~LSgGqkQrl~lARaLl~---------~p  157 (275)
T cd03289          87 FIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLS---------KA  157 (275)
T ss_pred             CCCCCCHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHC---------CC
T ss_conf             326741999703212228899999999976699998573667403268887239999999999999951---------99


Q ss_pred             EEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCC
Q ss_conf             79998445687675310358999999999642013589998516544441467885056305720368111003267631
Q gi|254780606|r  530 YIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHG  609 (744)
Q Consensus       530 ~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~g  609 (744)
T Consensus       158 ~-IllLDEpTs~LD~---~te~~i~~~l~~-~~~~~TvI~itHrl~------~~~~-~-DrIlvl-----d~G~Ive~Gt  219 (275)
T cd03289         158 K-ILLLDEPSAHLDP---ITYQVIRKTLKQ-AFADCTVILSEHRIE------AMLE-C-QRFLVI-----EENKVRQYDS  219 (275)
T ss_pred             C-EEEEECCCCCCCH---HHHHHHHHHHHH-HCCCCEEEEEECCHH------HHHH-C-CEEEEE-----ECCEEEEECC
T ss_conf             9-8999797668999---999999999999-729998999943888------8986-9-999999-----8999999789


Q ss_pred             HHHHCCCCCEE
Q ss_conf             68856898468
Q gi|254780606|r  610 AEQLLGRGDML  620 (744)
Q Consensus       610 ae~l~g~gd~l  620 (744)
T Consensus       220 ~eeLl~~~~~y  230 (275)
T cd03289         220 IQKLLNEKSHF  230 (275)
T ss_pred             HHHHHHCCCCH
T ss_conf             89998678915