HHsearch alignment for GI: 254780606 and conserved domain: cd03294
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.057 Score=32.49 Aligned_cols=169 Identities=20% Similarity=0.308 Sum_probs=82.9
Q ss_pred CCCCEEEEEEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC--C-------------
Q ss_conf 6783689842057887321120114846997078753447999999999985680110799972--3-------------
Q gi|254780606|r 388 SKANLALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD--P------------- 452 (744)
Q Consensus 388 ~~~~l~~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD--~------------- 452 (744)
T Consensus 26 ~~e~v~K~fG~~~aL~~vsl~i~~GE~~~ivG~SGsGKSTLLr-~i~GL~---~p~~G~I~~~G~~i~~~~~~~l~~~r~ 101 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLR-CINRLI---EPTSGKVLIDGQDIAAMSRKELRELRR 101 (269)
T ss_pred CHHHEEEECCCEEEECCCEEEECCCCEEEEECCCCCHHHHHHH-HHHCCC---CCCCEEEEECCEECCCCCHHHHHHHHC
T ss_conf 8788588509927977747588899999999899848999999-997599---999759999999999999899988525
Q ss_pred C--CCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHH-H--------HHHHHHHHCCCCCC
Q ss_conf 4--21000125775200004444178768999999866769-99999807786799-9--------99886420267766
Q gi|254780606|r 453 K--MLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEER-YRKMSHLSVRNIKS-Y--------NERISTMYGEKPQG 520 (744)
Q Consensus 453 k--~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r-~~~~~~~~~~~i~~-~--------n~~~~~~~~~~~~~ 520 (744)
T Consensus 102 ~~igmVFQ~~aL~P~lt--V~eNV~~~L~~~~~~~~e~~~rv~e~L~~vgL~~~~~~~P~qLSGGq~QRVaIARA----- 174 (269)
T cd03294 102 KKISMVFQSFALLPHRT--VLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARA----- 174 (269)
T ss_pred CCEEEEEECCCCCCCCC--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHHCHHHHHHHHHHHH-----
T ss_conf 64699961575476787--99998688885289978999999999986798677756967849488889999999-----
Q ss_pred CCCCCCCCCEEEEEHHH-HHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 65432338679998445-68767531035899999999964201358999851654
Q gi|254780606|r 521 CGDDMRPMPYIVIIVDE-MADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 521 ~~~~~~~~p~ivvviDE-~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
T Consensus 175 ----La~~P~iL-LlDEPtsaLD~~~~~~i~~---~l~~l~~~~~~T~i~VTHD~~ 222 (269)
T cd03294 175 ----LAVDPDIL-LMDEAFSALDPLIRREMQD---ELLRLQAELQKTIVFITHDLD 222 (269)
T ss_pred ----HHCCCCEE-EECCCCCCCCHHHHHHHHH---HHHHHHHHHCCEEEEECCCHH
T ss_conf ----86399899-9758754259999999999---999999974999999999899