>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=96.04 E-value=0.0049 Score=39.80 Aligned_cols=163 Identities=18% Similarity=0.357 Sum_probs=82.5 Q ss_pred EEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCC--------------CEECCCCCCCCEEEE Q ss_conf 321120114846997078753447999999999985680110799972342--------------100012577520000 Q gi|254780606|r 404 SVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKM--------------LELSVYDGIPHLLTP 469 (744) Q Consensus 404 ~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~--------------~~~~~~~~~ph~~~~ 469 (744) T Consensus 19 ~vsl~i~~Ge~~~ilGpSG~GKSTllr-~i~gl~---~p~~G~I~-i~g~~i~~~~~~~lrr~ig~vfQ~~~Lfp~lt-- 91 (242) T cd03295 19 NLNLEIAKGEFLVLIGPSGSGKTTTMK-MINRLI---EPTSGEIF-IDGEDIREQDPVELRRKIGYVIQQIGLFPHMT-- 91 (242) T ss_pred EEEEEECCCCEEEEECCCCCHHHHHHH-HHHCCC---CCCCEEEE-ECCEECCCCCHHHHHCCCEEEECCCCCCCCCC-- T ss_conf 027688699899999999956999999-997599---99815999-99999999997897388679917997588882-- Q ss_pred EEECHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCHHHHH------------HHHHHHHCCCCCCCCCCCCCCCEEEEEHH Q ss_conf 444417876899999986676999-99980778679999------------98864202677666543233867999844 Q gi|254780606|r 470 VVTNPKKAVMALKWAVREMEERYR-KMSHLSVRNIKSYN------------ERISTMYGEKPQGCGDDMRPMPYIVIIVD 536 (744) Q Consensus 470 v~~~~~~~~~~l~~~~~em~~r~~-~~~~~~~~~i~~~n------------~~~~~~~~~~~~~~~~~~~~~p~ivvviD 536 (744) T Consensus 92 V~eNi~~~~~~~~~~~~~~~~rv~ell~~v~L~-~~~~~~~~p~~LSGGqkQRvaiARAl---------~~~P~il-LlD 160 (242) T cd03295 92 VEENIALVPKLLKWPKEKIRERADELLALVGLD-PAEFADRYPHELSGGQQQRVGVARAL---------AADPPLL-LMD 160 (242) T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC-CHHHCCCCHHHCCHHHHHHHHHHHHH---------HCCCCEE-EEC T ss_conf 999999999975999999999999999874999-30110079566899999999999999---------6299999-981 Q ss_pred H-HHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEE Q ss_conf 5-687675310358999999999642013589998516544441467885056305720 Q gi|254780606|r 537 E-MADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQ 594 (744) Q Consensus 537 E-~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~ 594 (744) T Consensus 161 EP~saLD~~~~~~i---~~~l~~l~~~~~~T~i~vTHd~~-ea~------~~aDri~vm 209 (242) T cd03295 161 EPFGALDPITRDQL---QEEFKRLQQELGKTIVFVTHDID-EAF------RLADRIAIM 209 (242) T ss_pred CCCCCCCHHHHHHH---HHHHHHHHHHHCCEEEEECCCHH-HHH------HHCCEEEEE T ss_conf 87654698999999---99999999975999999998999-999------969989999

HHsearch alignment for GI: 254780606 and conserved domain: cd03295