Query gi|254780606|ref|YP_003065019.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 744
No_of_seqs 778 out of 3319
Neff 7.7
Searched_HMMs 39220
Date Mon May 30 06:14:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780606.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10263 DNA translocase FtsK; 100.0 0 0 1357.9 46.9 476 263-741 861-1351(1355)
2 COG1674 FtsK DNA segregation A 100.0 0 0 947.7 29.5 472 261-742 376-855 (858)
3 pfam01580 FtsK_SpoIIIE FtsK/Sp 100.0 0 0 351.8 19.5 197 376-576 2-202 (202)
4 smart00843 Ftsk_gamma This dom 99.9 3.1E-24 7.8E-29 185.2 3.9 63 679-741 1-63 (63)
5 pfam09397 Ftsk_gamma Ftsk gamm 99.9 5.4E-24 1.4E-28 183.5 3.9 65 678-742 2-66 (67)
6 COG1674 FtsK DNA segregation A 99.6 3.4E-16 8.6E-21 130.1 4.1 221 391-637 260-487 (858)
7 PRK13873 conjugal transfer ATP 99.3 5.2E-08 1.3E-12 73.9 28.4 289 293-600 311-710 (815)
8 PRK13830 conjugal transfer pro 99.3 5.1E-08 1.3E-12 74.0 24.9 338 294-651 324-793 (818)
9 PRK13891 conjugal transfer pro 99.2 8.8E-08 2.2E-12 72.4 25.6 293 292-600 353-759 (852)
10 PRK13853 type IV secretion sys 99.2 3.9E-08 9.9E-13 74.8 20.1 266 356-631 366-740 (789)
11 pfam05872 DUF853 Bacterial pro 99.1 1.6E-08 4.1E-13 77.4 15.1 119 527-647 255-399 (504)
12 PRK13898 type IV secretion sys 99.1 3.9E-08 9.9E-13 74.8 16.7 212 392-611 424-726 (800)
13 cd01127 TrwB Bacterial conjuga 98.9 9.4E-09 2.4E-13 79.0 9.8 104 529-644 270-392 (410)
14 COG3451 VirB4 Type IV secretor 98.9 4.3E-07 1.1E-11 67.7 16.4 219 386-611 407-719 (796)
15 pfam10412 TrwB_AAD_bind Type I 98.8 2.4E-07 6E-12 69.4 12.2 69 530-604 244-318 (386)
16 PRK13721 conjugal transfer ATP 98.4 4.5E-05 1.2E-09 53.8 15.3 124 530-654 685-836 (864)
17 COG2401 ABC-type ATPase fused 98.2 1.1E-05 2.9E-10 57.9 9.1 163 394-575 387-569 (593)
18 TIGR00929 VirB4_CagE type IV s 98.0 1.4E-05 3.7E-10 57.2 6.1 214 389-606 478-835 (931)
19 pfam01935 DUF87 Domain of unkn 98.0 1E-05 2.6E-10 58.2 5.2 61 394-458 1-65 (218)
20 PRK13900 type IV secretion sys 98.0 0.00093 2.4E-08 44.8 14.6 218 325-596 46-312 (332)
21 PRK00411 cdc6 cell division co 97.9 3.6E-05 9.1E-10 54.5 6.7 268 411-730 54-358 (394)
22 TIGR01420 pilT_fam twitching m 97.9 1.7E-05 4.3E-10 56.7 4.1 190 404-663 117-313 (350)
23 TIGR02788 VirB11 P-type DNA tr 97.9 6.5E-05 1.7E-09 52.7 7.0 213 319-567 29-291 (328)
24 PRK13700 conjugal transfer pro 97.8 2.1E-05 5.3E-10 56.1 4.3 71 528-604 417-493 (732)
25 cd00984 DnaB_C DnaB helicase C 97.8 0.00013 3.3E-09 50.7 8.3 145 413-574 14-173 (242)
26 smart00382 AAA ATPases associa 97.8 0.00014 3.7E-09 50.3 8.5 141 412-594 2-145 (148)
27 TIGR02759 TraD_Ftype type IV c 97.8 3.3E-05 8.5E-10 54.7 4.8 55 400-458 196-250 (613)
28 cd03243 ABC_MutS_homologs The 97.7 0.0007 1.8E-08 45.6 10.2 125 411-579 28-156 (202)
29 COG2805 PilT Tfp pilus assembl 97.7 9.9E-05 2.5E-09 51.4 5.6 184 404-658 115-305 (353)
30 cd01122 GP4d_helicase GP4d_hel 97.6 0.0002 5E-09 49.4 6.8 143 413-572 31-189 (271)
31 PRK11131 ATP-dependent RNA hel 97.6 0.00088 2.2E-08 44.9 9.5 25 410-434 87-111 (1295)
32 cd00009 AAA The AAA+ (ATPases 97.6 0.0011 2.8E-08 44.3 9.9 27 411-437 18-44 (151)
33 cd01120 RecA-like_NTPases RecA 97.5 0.0034 8.5E-08 40.9 12.0 139 414-593 1-163 (165)
34 TIGR03015 pepcterm_ATPase puta 97.5 0.00021 5.4E-09 49.2 5.8 143 412-596 43-188 (269)
35 TIGR02782 TrbB_P P-type conjug 97.5 0.00012 3.1E-09 50.8 4.4 145 297-453 10-180 (315)
36 pfam03796 DnaB_C DnaB-like hel 97.5 0.0013 3.2E-08 43.9 9.3 147 410-573 17-180 (186)
37 pfam04665 Pox_A32 Poxvirus A32 97.4 0.0024 6E-08 42.0 10.0 150 408-597 8-159 (241)
38 PRK13833 conjugal transfer pro 97.4 0.00016 4.2E-09 49.9 4.1 112 329-459 56-188 (323)
39 COG0433 HerA helicase [Replica 97.4 0.00013 3.3E-09 50.6 3.5 73 531-605 393-466 (520)
40 PRK13894 conjugal transfer ATP 97.4 0.0084 2.1E-07 38.2 12.5 140 297-454 27-190 (320)
41 COG1643 HrpA HrpA-like helicas 97.4 0.0037 9.5E-08 40.6 10.7 191 409-650 62-281 (845)
42 PRK11664 ATP-dependent RNA hel 97.4 0.0022 5.6E-08 42.2 9.5 76 572-649 484-570 (812)
43 cd03280 ABC_MutS2 MutS2 homolo 97.3 0.006 1.5E-07 39.2 10.9 145 387-575 4-152 (200)
44 PRK12402 replication factor C 97.3 0.001 2.6E-08 44.5 6.9 83 529-619 125-220 (337)
45 smart00534 MUTSac ATPase domai 97.3 0.002 5.1E-08 42.5 8.0 121 415-575 2-123 (185)
46 COG1205 Distinct helicase fami 97.2 0.0017 4.4E-08 43.0 7.5 113 412-564 85-230 (851)
47 PRK04328 hypothetical protein; 97.2 0.0088 2.2E-07 38.1 10.5 138 411-575 23-175 (250)
48 cd03286 ABC_MSH6_euk MutS6 hom 97.2 0.0095 2.4E-07 37.9 10.6 119 414-575 32-154 (218)
49 cd01126 TraG_VirD4 The TraG/Tr 97.2 0.00048 1.2E-08 46.7 3.9 69 530-604 264-338 (384)
50 pfam05621 TniB Bacterial TniB 97.1 0.0015 3.8E-08 43.4 6.3 222 410-735 59-296 (302)
51 KOG0926 consensus 97.1 0.0021 5.4E-08 42.3 7.0 243 368-656 232-509 (1172)
52 pfam00488 MutS_V MutS domain V 97.1 0.0081 2.1E-07 38.3 9.8 132 402-576 28-167 (234)
53 PRK10436 hypothetical protein; 97.1 0.00089 2.3E-08 44.9 4.6 145 304-458 93-258 (461)
54 PRK13851 type IV secretion sys 97.1 0.00048 1.2E-08 46.7 3.1 35 412-451 162-196 (343)
55 cd03281 ABC_MSH5_euk MutS5 hom 97.0 0.0055 1.4E-07 39.5 8.4 121 415-576 32-156 (213)
56 KOG2035 consensus 97.0 0.032 8.1E-07 34.3 12.7 154 410-602 32-190 (351)
57 cd01130 VirB11-like_ATPase Typ 96.9 0.0011 2.7E-08 44.4 4.1 39 411-454 24-63 (186)
58 CHL00081 chlI Mg-protoporyphyr 96.9 0.0021 5.4E-08 42.3 5.5 183 388-602 7-219 (347)
59 COG1136 SalX ABC-type antimicr 96.9 0.0029 7.5E-08 41.3 6.2 152 406-576 25-205 (226)
60 COG1474 CDC6 Cdc6-related prot 96.9 0.0012 3E-08 44.1 4.1 158 412-607 41-201 (366)
61 cd03285 ABC_MSH2_euk MutS2 hom 96.9 0.0091 2.3E-07 38.0 8.7 119 415-576 33-155 (222)
62 pfam02534 TraG TraG/TraD famil 96.9 0.0012 3E-08 44.1 4.0 61 530-596 303-369 (468)
63 cd03282 ABC_MSH4_euk MutS4 hom 96.8 0.014 3.5E-07 36.7 9.1 128 414-589 31-162 (204)
64 TIGR02746 TraC-F-type type-IV 96.8 0.0017 4.2E-08 43.0 4.2 107 529-641 734-847 (900)
65 PRK08694 consensus 96.8 0.011 2.9E-07 37.3 8.4 151 409-574 215-380 (468)
66 cd01131 PilT Pilus retraction 96.8 0.0031 7.8E-08 41.2 5.4 37 415-454 4-41 (198)
67 cd03283 ABC_MutS-like MutS-lik 96.8 0.021 5.4E-07 35.5 9.5 119 414-575 27-149 (199)
68 PRK09165 replicative DNA helic 96.7 0.015 3.8E-07 36.5 8.6 151 411-575 204-382 (484)
69 cd03301 ABC_MalK_N The N-termi 96.7 0.014 3.6E-07 36.6 8.3 151 406-575 20-192 (213)
70 COG5008 PilU Tfp pilus assembl 96.7 0.0058 1.5E-07 39.3 6.2 110 410-575 125-235 (375)
71 KOG0922 consensus 96.7 0.019 4.8E-07 35.8 8.8 52 530-584 164-215 (674)
72 cd03284 ABC_MutS1 MutS1 homolo 96.7 0.02 5E-07 35.7 8.9 123 415-577 33-156 (216)
73 cd03299 ABC_ModC_like Archeal 96.7 0.011 2.7E-07 37.5 7.5 165 404-594 17-203 (235)
74 PRK05595 replicative DNA helic 96.7 0.033 8.3E-07 34.2 9.9 150 408-574 197-361 (444)
75 COG1122 CbiO ABC-type cobalt t 96.6 0.0021 5.4E-08 42.3 3.7 158 406-575 24-200 (235)
76 PRK00440 rfc replication facto 96.6 0.006 1.5E-07 39.2 6.0 149 410-619 35-196 (318)
77 PRK05636 replicative DNA helic 96.6 0.017 4.2E-07 36.2 8.2 150 409-575 264-428 (507)
78 pfam06745 KaiC KaiC. This fami 96.6 0.039 9.9E-07 33.6 10.1 45 532-576 122-167 (231)
79 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.063 1.6E-06 32.2 12.5 40 415-454 22-63 (235)
80 TIGR03608 L_ocin_972_ABC putat 96.6 0.015 3.9E-07 36.4 7.9 152 404-575 16-195 (206)
81 TIGR02928 TIGR02928 orc1/cdc6 96.6 0.017 4.4E-07 36.1 8.2 276 413-736 44-373 (383)
82 pfam05707 Zot Zonular occluden 96.6 0.003 7.7E-08 41.2 4.2 61 532-595 73-135 (183)
83 COG4962 CpaF Flp pilus assembl 96.6 0.0026 6.7E-08 41.7 3.8 175 285-475 28-227 (355)
84 cd03292 ABC_FtsE_transporter F 96.6 0.011 2.8E-07 37.4 6.9 153 405-575 20-197 (214)
85 pfam10236 DAP3 Mitochondrial r 96.5 0.066 1.7E-06 32.1 10.7 69 414-486 25-95 (274)
86 pfam00437 GSPII_E Type II/IV s 96.5 0.002 5E-08 42.5 2.8 40 412-455 139-179 (283)
87 PRK08082 consensus 96.5 0.019 4.9E-07 35.7 7.9 151 408-575 199-365 (453)
88 PRK06321 replicative DNA helic 96.5 0.038 9.7E-07 33.7 9.4 147 411-574 225-389 (472)
89 PRK07004 replicative DNA helic 96.5 0.026 6.6E-07 34.9 8.5 150 409-574 210-374 (460)
90 PHA00520 packaging NTPase P4 96.5 0.02 5.1E-07 35.6 7.8 124 400-575 97-234 (326)
91 PRK11174 cysteine/glutathione 96.5 0.014 3.7E-07 36.6 7.1 156 401-575 361-545 (588)
92 cd03258 ABC_MetN_methionine_tr 96.5 0.015 3.8E-07 36.5 7.1 164 405-594 24-214 (233)
93 PRK08760 replicative DNA helic 96.5 0.028 7.1E-07 34.6 8.5 148 409-573 226-388 (476)
94 TIGR03269 met_CoM_red_A2 methy 96.4 0.029 7.4E-07 34.5 8.4 33 404-437 302-334 (520)
95 PRK13644 cbiO cobalt transport 96.4 0.022 5.5E-07 35.4 7.7 207 405-654 21-251 (274)
96 PRK07263 consensus 96.4 0.034 8.8E-07 34.0 8.6 152 409-575 200-365 (453)
97 smart00487 DEXDc DEAD-like hel 96.4 0.026 6.6E-07 34.9 8.0 38 413-452 25-62 (201)
98 PRK06749 replicative DNA helic 96.4 0.039 9.9E-07 33.7 8.8 151 409-575 183-351 (428)
99 PRK10938 putative molybdenum t 96.4 0.014 3.5E-07 36.8 6.5 30 405-435 279-308 (490)
100 PRK05748 replicative DNA helic 96.4 0.031 8E-07 34.3 8.3 150 409-574 200-365 (448)
101 cd03227 ABC_Class2 ABC-type Cl 96.4 0.013 3.4E-07 36.8 6.4 35 408-442 17-51 (162)
102 cd03287 ABC_MSH3_euk MutS3 hom 96.4 0.038 9.8E-07 33.7 8.7 134 414-591 33-167 (222)
103 PRK10875 recD exonuclease V su 96.3 0.068 1.7E-06 32.0 9.9 134 411-577 161-303 (607)
104 cd03300 ABC_PotA_N PotA is an 96.3 0.041 1E-06 33.5 8.6 165 403-594 17-204 (232)
105 pfam00004 AAA ATPase family as 96.3 0.07 1.8E-06 31.9 9.7 61 531-593 59-129 (131)
106 TIGR03600 phage_DnaB phage rep 96.3 0.03 7.8E-07 34.4 7.9 151 409-575 191-355 (421)
107 COG2804 PulE Type II secretory 96.3 0.0028 7.1E-08 41.5 2.6 86 365-458 214-301 (500)
108 COG1132 MdlB ABC-type multidru 96.3 0.048 1.2E-06 33.0 8.8 53 402-458 341-399 (567)
109 pfam05729 NACHT NACHT domain. 96.3 0.017 4.4E-07 36.0 6.6 34 414-447 2-35 (165)
110 PRK09112 DNA polymerase III su 96.3 0.031 8E-07 34.3 7.8 165 410-606 42-210 (352)
111 KOG0060 consensus 96.3 0.056 1.4E-06 32.6 9.1 155 400-577 445-630 (659)
112 PRK03992 proteasome-activating 96.2 0.11 2.8E-06 30.6 13.4 247 287-606 32-313 (390)
113 PRK11432 fbpC ferric transport 96.2 0.06 1.5E-06 32.4 8.9 165 392-575 12-198 (351)
114 COG3839 MalK ABC-type sugar tr 96.2 0.016 4.1E-07 36.2 5.9 160 405-595 22-208 (338)
115 PRK09493 glnQ glutamine ABC tr 96.2 0.038 9.8E-07 33.7 7.8 52 392-447 7-58 (240)
116 TIGR00929 VirB4_CagE type IV s 96.2 0.01 2.6E-07 37.6 4.9 31 683-713 634-670 (931)
117 TIGR01842 type_I_sec_PrtD type 96.1 0.0093 2.4E-07 37.9 4.6 150 411-575 355-527 (556)
118 TIGR03258 PhnT 2-aminoethylpho 96.1 0.013 3.2E-07 37.0 5.2 162 406-593 25-211 (362)
119 TIGR02673 FtsE cell division A 96.1 0.037 9.5E-07 33.8 7.6 164 405-592 21-209 (215)
120 COG3840 ThiQ ABC-type thiamine 96.1 0.0098 2.5E-07 37.8 4.6 176 402-598 13-207 (231)
121 PRK09361 radB DNA repair and r 96.1 0.084 2.1E-06 31.4 9.3 39 411-453 22-60 (224)
122 PRK10247 putative ABC transpor 96.1 0.046 1.2E-06 33.2 7.9 154 401-575 18-199 (225)
123 PRK13632 cbiO cobalt transport 96.1 0.058 1.5E-06 32.5 8.4 190 404-622 28-239 (273)
124 PRK09452 potA putrescine/sperm 96.1 0.063 1.6E-06 32.2 8.5 162 405-593 36-220 (378)
125 cd01393 recA_like RecA is a b 96.1 0.13 3.2E-06 30.2 11.7 40 414-453 21-62 (226)
126 PRK08840 replicative DNA helic 96.1 0.039 1E-06 33.6 7.5 147 409-572 214-377 (464)
127 PRK13767 ATP-dependent helicas 96.1 0.048 1.2E-06 33.0 7.9 12 697-708 739-750 (878)
128 PRK13538 cytochrome c biogenes 96.0 0.091 2.3E-06 31.1 9.3 47 398-448 9-59 (204)
129 pfam07693 KAP_NTPase KAP famil 96.0 0.043 1.1E-06 33.3 7.6 88 530-648 161-248 (301)
130 cd03295 ABC_OpuCA_Osmoprotecti 96.0 0.0049 1.3E-07 39.8 2.8 163 404-594 19-209 (242)
131 PRK13897 type IV secretion sys 96.0 0.0026 6.6E-08 41.7 1.3 66 531-602 407-478 (628)
132 pfam05970 DUF889 PIF1 helicase 96.0 0.0091 2.3E-07 38.0 4.1 41 531-575 76-126 (418)
133 PRK10908 cell division protein 96.0 0.035 9E-07 33.9 7.0 155 402-575 14-198 (222)
134 COG0419 SbcC ATPase involved i 96.0 0.015 3.8E-07 36.5 5.1 39 403-441 16-54 (908)
135 PRK10789 putative multidrug tr 96.0 0.047 1.2E-06 33.0 7.6 158 401-575 326-511 (569)
136 COG1126 GlnQ ABC-type polar am 96.0 0.07 1.8E-06 31.9 8.4 161 407-594 23-209 (240)
137 PRK13407 bchI magnesium chelat 95.9 0.0046 1.2E-07 40.0 2.3 62 531-596 130-202 (334)
138 cd03289 ABCC_CFTR2 The CFTR su 95.9 0.043 1.1E-06 33.3 7.2 195 396-620 10-230 (275)
139 PRK10744 phosphate transporter 95.9 0.11 2.9E-06 30.4 9.4 44 392-436 16-59 (257)
140 COG4618 ArpD ABC-type protease 95.9 0.018 4.6E-07 35.9 5.3 158 403-575 349-533 (580)
141 PRK08506 replicative DNA helic 95.9 0.074 1.9E-06 31.7 8.3 148 409-573 190-352 (473)
142 cd03262 ABC_HisP_GlnQ_permease 95.9 0.01 2.6E-07 37.6 3.9 148 405-575 19-196 (213)
143 TIGR02533 type_II_gspE general 95.8 0.0029 7.5E-08 41.3 1.0 228 352-645 185-452 (495)
144 PRK13657 cyclic beta-1,2-gluca 95.8 0.034 8.7E-07 34.0 6.3 52 405-458 354-405 (585)
145 cd00046 DEXDc DEAD-like helica 95.8 0.1 2.6E-06 30.8 8.7 39 413-453 1-39 (144)
146 pfam00735 Septin Septin. Membe 95.8 0.0066 1.7E-07 38.9 2.6 27 414-440 6-32 (280)
147 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.8 0.028 7.1E-07 34.6 5.7 163 405-593 23-212 (218)
148 COG1223 Predicted ATPase (AAA+ 95.8 0.07 1.8E-06 31.9 7.7 82 531-615 212-302 (368)
149 PTZ00301 uridine kinase; Provi 95.8 0.017 4.2E-07 36.2 4.5 38 415-452 6-43 (210)
150 TIGR03375 type_I_sec_LssB type 95.8 0.038 9.6E-07 33.8 6.3 62 396-459 471-536 (694)
151 PRK11124 artP arginine transpo 95.7 0.087 2.2E-06 31.2 8.2 54 392-449 8-61 (242)
152 PRK13633 cobalt transporter AT 95.7 0.017 4.2E-07 36.2 4.4 206 405-653 30-261 (281)
153 cd03270 ABC_UvrA_I The excisio 95.7 0.068 1.7E-06 32.0 7.5 29 405-433 14-42 (226)
154 PRK13546 teichoic acids export 95.7 0.098 2.5E-06 30.9 8.3 38 406-447 44-81 (264)
155 cd01394 radB RadB. The archaea 95.7 0.1 2.6E-06 30.8 8.4 38 412-453 19-56 (218)
156 PRK13641 cbiO cobalt transport 95.7 0.039 1E-06 33.6 6.3 206 405-653 26-261 (286)
157 PRK13647 cbiO cobalt transport 95.7 0.02 5.2E-07 35.6 4.7 154 405-575 24-199 (273)
158 PRK10418 nikD nickel transport 95.7 0.021 5.4E-07 35.5 4.8 157 402-575 15-202 (254)
159 pfam06414 Zeta_toxin Zeta toxi 95.7 0.082 2.1E-06 31.4 7.8 34 414-453 14-47 (191)
160 cd01124 KaiC KaiC is a circadi 95.7 0.18 4.6E-06 29.1 11.3 25 415-439 2-26 (187)
161 COG0470 HolB ATPase involved i 95.7 0.046 1.2E-06 33.1 6.5 170 411-621 22-195 (325)
162 cd01126 TraG_VirD4 The TraG/Tr 95.6 0.021 5.3E-07 35.5 4.6 35 414-454 1-35 (384)
163 KOG0924 consensus 95.6 0.15 3.8E-06 29.7 8.8 243 358-651 305-586 (1042)
164 PRK10419 nikE nickel transport 95.6 0.18 4.6E-06 29.0 9.3 156 405-575 31-213 (266)
165 cd01850 CDC_Septin CDC/Septin. 95.6 0.0051 1.3E-07 39.7 1.3 28 414-441 6-33 (276)
166 PRK11650 ugpC glycerol-3-phosp 95.6 0.038 9.7E-07 33.7 5.8 163 405-593 23-207 (358)
167 PRK08006 replicative DNA helic 95.6 0.14 3.7E-06 29.7 8.7 150 409-574 221-386 (471)
168 PRK06305 DNA polymerase III su 95.6 0.15 3.9E-06 29.5 8.9 145 410-600 36-184 (462)
169 COG1198 PriA Primosomal protei 95.5 0.066 1.7E-06 32.1 6.9 141 412-581 217-366 (730)
170 pfam02456 Adeno_IVa2 Adenoviru 95.5 0.0098 2.5E-07 37.7 2.7 40 409-448 83-123 (370)
171 TIGR02525 plasmid_TraJ plasmid 95.5 0.0068 1.7E-07 38.8 1.8 70 411-482 148-220 (374)
172 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.5 0.0076 1.9E-07 38.5 2.1 51 402-456 15-71 (238)
173 PRK13651 cobalt transporter AT 95.5 0.015 3.7E-07 36.6 3.5 209 405-654 26-278 (304)
174 TIGR03265 PhnT2 putative 2-ami 95.5 0.032 8.3E-07 34.2 5.2 190 405-620 23-241 (353)
175 COG0433 HerA helicase [Replica 95.5 0.025 6.3E-07 35.0 4.6 63 393-459 144-211 (520)
176 cd03294 ABC_Pro_Gly_Bertaine T 95.5 0.057 1.5E-06 32.5 6.4 169 388-575 26-222 (269)
177 PRK12337 2-phosphoglycerate ki 95.5 0.055 1.4E-06 32.6 6.3 281 327-723 198-489 (492)
178 PRK10584 putative ABC transpor 95.5 0.079 2E-06 31.5 7.1 41 405-449 29-69 (228)
179 PRK09984 phosphonate/organopho 95.5 0.14 3.5E-06 29.9 8.3 159 403-575 21-214 (262)
180 PRK13635 cbiO cobalt transport 95.5 0.017 4.4E-07 36.1 3.7 212 405-655 26-258 (279)
181 PRK13637 cbiO cobalt transport 95.5 0.017 4.5E-07 36.0 3.7 208 405-653 26-261 (287)
182 cd03261 ABC_Org_Solvent_Resist 95.5 0.085 2.2E-06 31.3 7.2 152 405-575 19-198 (235)
183 cd03245 ABCC_bacteriocin_expor 95.4 0.026 6.6E-07 34.9 4.5 58 396-455 10-71 (220)
184 PRK11614 livF leucine/isoleuci 95.4 0.22 5.5E-06 28.5 9.9 53 392-448 11-63 (237)
185 KOG1514 consensus 95.4 0.12 3.1E-06 30.3 7.9 158 414-607 424-587 (767)
186 PRK13643 cbiO cobalt transport 95.4 0.12 3.1E-06 30.3 7.9 208 405-656 25-263 (288)
187 PRK11300 livG leucine/isoleuci 95.3 0.18 4.6E-06 29.0 8.6 41 405-447 24-64 (255)
188 cd04104 p47_IIGP_like p47 (47- 95.3 0.011 2.9E-07 37.3 2.4 20 414-433 3-22 (197)
189 cd03228 ABCC_MRP_Like The MRP 95.3 0.068 1.7E-06 32.0 6.3 40 406-449 22-61 (171)
190 PRK10535 macrolide transporter 95.3 0.013 3.4E-07 36.9 2.7 153 405-575 27-205 (648)
191 PRK11248 tauB taurine transpor 95.3 0.13 3.3E-06 30.0 7.8 156 401-575 12-190 (255)
192 PRK06904 replicative DNA helic 95.3 0.19 4.7E-06 29.0 8.5 148 409-572 218-382 (472)
193 cd01128 rho_factor Transcripti 95.3 0.24 6.2E-06 28.2 13.2 53 408-460 12-64 (249)
194 PRK10261 glutathione transport 95.3 0.18 4.7E-06 29.0 8.5 33 404-437 342-374 (623)
195 PRK10790 putative multidrug tr 95.3 0.052 1.3E-06 32.8 5.6 54 402-457 353-410 (593)
196 cd03296 ABC_CysA_sulfate_impor 95.2 0.25 6.4E-06 28.1 10.8 160 405-594 21-210 (239)
197 cd03246 ABCC_Protease_Secretio 95.2 0.046 1.2E-06 33.2 5.2 138 402-575 14-157 (173)
198 PRK06995 flhF flagellar biosyn 95.2 0.13 3.2E-06 30.1 7.4 145 416-606 180-328 (404)
199 cd01129 PulE-GspE PulE/GspE Th 95.2 0.034 8.6E-07 34.1 4.5 56 396-455 62-120 (264)
200 PRK09473 oppD oligopeptide tra 95.2 0.24 6.2E-06 28.2 8.9 183 405-608 35-253 (330)
201 KOG0735 consensus 95.2 0.0088 2.2E-07 38.1 1.5 55 409-466 428-482 (952)
202 PRK10619 histidine/lysine/argi 95.2 0.22 5.7E-06 28.5 8.6 41 405-449 24-64 (257)
203 cd03224 ABC_TM1139_LivF_branch 95.1 0.11 2.9E-06 30.4 7.1 45 401-449 11-59 (222)
204 PRK09751 putative ATP-dependen 95.1 0.15 3.7E-06 29.7 7.6 50 680-729 972-1021(1490)
205 TIGR03499 FlhF flagellar biosy 95.1 0.051 1.3E-06 32.8 5.3 68 415-482 197-268 (282)
206 COG5271 MDN1 AAA ATPase contai 95.1 0.047 1.2E-06 33.1 5.1 19 551-569 4511-4529(4600)
207 cd03369 ABCC_NFT1 Domain 2 of 95.1 0.074 1.9E-06 31.7 6.1 32 405-437 27-58 (207)
208 PRK11000 maltose/maltodextrin 95.1 0.038 9.8E-07 33.7 4.6 153 403-575 20-195 (369)
209 PRK13645 cbiO cobalt transport 95.1 0.22 5.5E-06 28.5 8.4 207 407-654 32-268 (289)
210 PRK05703 flhF flagellar biosyn 95.1 0.068 1.7E-06 32.0 5.8 68 415-482 213-284 (412)
211 PRK06526 transposase; Provisio 95.1 0.28 7.1E-06 27.8 9.9 27 412-438 98-124 (254)
212 cd03233 ABC_PDR_domain1 The pl 95.1 0.17 4.4E-06 29.2 7.8 45 392-437 9-57 (202)
213 PRK13636 cbiO cobalt transport 95.1 0.036 9.1E-07 33.9 4.3 207 405-651 25-256 (285)
214 COG4148 ModC ABC-type molybdat 95.1 0.11 2.7E-06 30.6 6.7 139 415-573 27-188 (352)
215 COG4167 SapF ABC-type antimicr 95.0 0.24 6E-06 28.3 8.4 155 403-574 30-210 (267)
216 COG3842 PotA ABC-type spermidi 95.0 0.031 7.8E-07 34.3 3.9 154 402-575 17-198 (352)
217 PRK10070 glycine betaine trans 95.0 0.15 3.8E-06 29.6 7.4 153 403-575 45-226 (400)
218 PRK13542 consensus 95.0 0.29 7.4E-06 27.7 10.0 49 396-448 24-76 (224)
219 PRK06067 flagellar accessory p 95.0 0.11 2.9E-06 30.5 6.7 39 411-451 31-69 (241)
220 cd03298 ABC_ThiQ_thiamine_tran 95.0 0.047 1.2E-06 33.1 4.8 146 408-575 20-190 (211)
221 PRK11629 lolD lipoprotein tran 95.0 0.084 2.1E-06 31.4 6.0 41 405-449 28-68 (233)
222 PRK13646 cbiO cobalt transport 95.0 0.13 3.3E-06 30.0 7.0 189 406-621 27-241 (286)
223 TIGR03415 ABC_choXWV_ATP choli 95.0 0.023 6E-07 35.2 3.2 163 403-594 41-238 (382)
224 TIGR00618 sbcc exonuclease Sbc 95.0 0.028 7.2E-07 34.6 3.6 42 398-440 11-57 (1063)
225 PRK13652 cbiO cobalt transport 95.0 0.026 6.7E-07 34.8 3.4 217 406-655 24-256 (277)
226 pfam00270 DEAD DEAD/DEAH box h 94.9 0.077 2E-06 31.6 5.7 43 411-453 13-55 (167)
227 cd00267 ABC_ATPase ABC (ATP-bi 94.9 0.086 2.2E-06 31.3 6.0 123 403-575 16-141 (157)
228 PRK13640 cbiO cobalt transport 94.9 0.033 8.3E-07 34.2 3.8 204 408-654 30-261 (283)
229 TIGR02324 CP_lyasePhnL phospho 94.9 0.017 4.2E-07 36.2 2.3 51 389-450 18-68 (224)
230 cd03248 ABCC_TAP TAP, the Tran 94.9 0.023 5.8E-07 35.2 3.0 30 407-437 35-64 (226)
231 TIGR01271 CFTR_protein cystic 94.9 0.018 4.7E-07 35.9 2.4 190 394-630 1264-1472(1534)
232 TIGR01447 recD exodeoxyribonuc 94.9 0.31 8E-06 27.4 9.6 126 393-539 216-359 (753)
233 PRK13342 recombination factor 94.9 0.31 7.9E-06 27.4 8.7 68 530-606 93-161 (417)
234 COG3596 Predicted GTPase [Gene 94.9 0.018 4.7E-07 35.9 2.4 24 414-437 41-64 (296)
235 PRK08233 hypothetical protein; 94.9 0.021 5.5E-07 35.4 2.7 22 415-436 6-27 (182)
236 PRK11176 lipid transporter ATP 94.9 0.11 2.8E-06 30.6 6.4 57 401-459 353-413 (581)
237 PRK11160 cysteine/glutathione 94.8 0.096 2.4E-06 31.0 6.0 62 404-469 359-429 (575)
238 TIGR02524 dot_icm_DotB Dot/Icm 94.8 0.027 6.9E-07 34.7 3.2 126 304-465 58-184 (358)
239 cd03252 ABCC_Hemolysin The ABC 94.8 0.047 1.2E-06 33.0 4.4 57 398-456 10-70 (237)
240 PRK13650 cbiO cobalt transport 94.8 0.034 8.7E-07 34.0 3.6 207 406-654 24-254 (276)
241 PRK12727 flagellar biosynthesi 94.7 0.3 7.7E-06 27.5 8.3 191 414-655 350-548 (557)
242 KOG0733 consensus 94.7 0.13 3.4E-06 30.0 6.5 13 563-575 646-658 (802)
243 pfam04157 EAP30 EAP30/Vps36 fa 94.7 0.086 2.2E-06 31.3 5.5 91 630-727 124-216 (219)
244 COG1239 ChlI Mg-chelatase subu 94.7 0.024 6.1E-07 35.1 2.7 79 530-612 145-234 (423)
245 PRK11607 potG putrescine trans 94.7 0.11 2.7E-06 30.6 5.9 187 405-620 38-256 (377)
246 PRK11247 ssuB aliphatic sulfon 94.7 0.32 8E-06 27.4 8.3 147 407-575 33-195 (257)
247 PRK05707 DNA polymerase III su 94.7 0.36 9.1E-06 27.1 9.1 155 409-606 18-175 (328)
248 pfam00308 Bac_DnaA Bacterial d 94.6 0.36 9.2E-06 27.0 11.5 111 414-581 36-146 (219)
249 cd03279 ABC_sbcCD SbcCD and ot 94.6 0.046 1.2E-06 33.1 3.9 44 399-443 12-58 (213)
250 COG1158 Rho Transcription term 94.6 0.041 1E-06 33.5 3.6 156 406-619 163-343 (422)
251 cd03291 ABCC_CFTR1 The CFTR su 94.6 0.03 7.6E-07 34.5 2.9 47 402-453 49-99 (282)
252 PRK13648 cbiO cobalt transport 94.6 0.066 1.7E-06 32.1 4.6 187 404-621 27-237 (269)
253 cd03297 ABC_ModC_molybdenum_tr 94.6 0.077 2E-06 31.6 4.9 139 415-575 26-193 (214)
254 PRK13539 cytochrome c biogenes 94.6 0.17 4.4E-06 29.2 6.7 49 398-450 10-62 (206)
255 PRK05580 primosome assembly pr 94.5 0.11 2.8E-06 30.6 5.7 20 560-579 314-333 (699)
256 cd04153 Arl5_Arl8 Arl5/Arl8 su 94.5 0.27 6.9E-06 27.9 7.6 32 411-442 14-45 (174)
257 PRK08058 DNA polymerase III su 94.4 0.29 7.5E-06 27.6 7.7 152 410-606 25-179 (329)
258 PRK13634 cbiO cobalt transport 94.4 0.04 1E-06 33.6 3.3 186 406-622 14-229 (276)
259 pfam07088 GvpD GvpD gas vesicl 94.4 0.068 1.7E-06 32.0 4.4 80 531-615 108-193 (484)
260 PRK11022 dppD dipeptide transp 94.4 0.4 1E-05 26.7 8.8 183 405-608 26-245 (327)
261 cd01125 repA Hexameric Replica 94.4 0.41 1.1E-05 26.6 9.0 45 531-575 113-160 (239)
262 PRK13639 cbiO cobalt transport 94.3 0.049 1.3E-06 32.9 3.5 205 407-653 23-253 (275)
263 PRK10851 sulfate/thiosulfate t 94.3 0.27 6.9E-06 27.9 7.3 152 405-575 21-198 (352)
264 PRK08181 transposase; Validate 94.3 0.43 1.1E-05 26.5 9.5 44 530-577 168-212 (269)
265 cd03213 ABCG_EPDR ABCG transpo 94.3 0.092 2.3E-06 31.1 4.8 36 401-437 20-59 (194)
266 PRK07399 DNA polymerase III su 94.3 0.17 4.4E-06 29.2 6.2 183 398-610 4-196 (314)
267 COG0464 SpoVK ATPases of the A 94.2 0.43 1.1E-05 26.5 10.2 74 531-606 337-420 (494)
268 cd02025 PanK Pantothenate kina 94.2 0.058 1.5E-06 32.4 3.8 36 415-451 2-38 (220)
269 cd03253 ABCC_ATM1_transporter 94.2 0.092 2.4E-06 31.1 4.8 43 401-447 12-58 (236)
270 PRK13649 cbiO cobalt transport 94.2 0.051 1.3E-06 32.9 3.4 208 405-655 26-263 (280)
271 PRK10575 iron-hydroxamate tran 94.2 0.43 1.1E-05 26.5 8.1 47 398-448 19-69 (265)
272 cd03225 ABC_cobalt_CbiO_domain 94.2 0.13 3.3E-06 30.0 5.4 153 405-575 20-195 (211)
273 TIGR02868 CydC ABC transporter 94.2 0.04 1E-06 33.6 2.8 64 404-471 379-451 (566)
274 cd01882 BMS1 Bms1. Bms1 is an 94.1 0.36 9.1E-06 27.0 7.6 27 411-437 36-64 (225)
275 TIGR00174 miaA tRNA delta(2)-i 94.1 0.14 3.6E-06 29.8 5.5 68 415-489 2-82 (307)
276 PRK13541 cytochrome c biogenes 94.1 0.47 1.2E-05 26.3 9.1 36 410-449 24-59 (195)
277 KOG1384 consensus 94.1 0.47 1.2E-05 26.2 8.2 53 414-473 9-72 (348)
278 TIGR01073 pcrA ATP-dependent D 94.1 0.13 3.3E-06 30.0 5.3 31 410-441 16-46 (811)
279 PRK06893 DNA replication initi 94.1 0.13 3.4E-06 30.0 5.3 30 411-440 38-67 (229)
280 PRK11701 phnK phosphonates tra 94.1 0.47 1.2E-05 26.2 10.1 43 403-449 23-65 (258)
281 cd03256 ABC_PhnC_transporter A 94.0 0.19 4.9E-06 28.9 6.1 152 406-575 21-206 (241)
282 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.0 0.24 6.1E-06 28.2 6.5 44 405-453 41-84 (224)
283 COG3598 RepA RecA-family ATPas 94.0 0.49 1.2E-05 26.1 10.7 146 411-573 88-241 (402)
284 cd03293 ABC_NrtD_SsuB_transpor 94.0 0.29 7.5E-06 27.6 6.9 152 406-575 24-193 (220)
285 cd03257 ABC_NikE_OppD_transpor 94.0 0.23 5.9E-06 28.4 6.4 40 406-449 25-64 (228)
286 cd03230 ABC_DR_subfamily_A Thi 93.9 0.29 7.3E-06 27.7 6.8 39 406-448 20-58 (173)
287 cd03232 ABC_PDR_domain2 The pl 93.9 0.26 6.7E-06 28.0 6.6 32 402-433 19-54 (192)
288 cd03251 ABCC_MsbA MsbA is an e 93.9 0.087 2.2E-06 31.3 4.1 58 397-456 9-70 (234)
289 PRK11153 metN DL-methionine tr 93.9 0.19 4.8E-06 28.9 5.8 190 405-616 24-243 (343)
290 PRK00409 recombination and DNA 93.9 0.31 7.9E-06 27.5 6.9 158 414-610 327-485 (780)
291 TIGR02538 type_IV_pilB type IV 93.8 0.03 7.5E-07 34.5 1.6 99 336-443 237-354 (577)
292 PRK12608 transcription termina 93.8 0.53 1.3E-05 25.9 9.0 54 409-462 129-182 (379)
293 pfam08423 Rad51 Rad51. Rad51 i 93.8 0.53 1.4E-05 25.9 8.0 46 529-574 138-193 (261)
294 COG0444 DppD ABC-type dipeptid 93.7 0.54 1.4E-05 25.8 8.0 186 405-609 24-246 (316)
295 COG0630 VirB11 Type IV secreto 93.7 0.08 2.1E-06 31.5 3.7 40 409-453 140-179 (312)
296 COG3854 SpoIIIAA ncharacterize 93.7 0.22 5.6E-06 28.5 5.9 65 389-453 110-179 (308)
297 PRK06871 DNA polymerase III su 93.7 0.55 1.4E-05 25.8 9.2 191 410-649 20-216 (324)
298 PRK10938 putative molybdenum t 93.7 0.55 1.4E-05 25.8 8.9 45 392-437 9-53 (490)
299 KOG0951 consensus 93.7 0.03 7.5E-07 34.5 1.4 95 355-456 265-369 (1674)
300 PRK11144 modC molybdate transp 93.7 0.35 9E-06 27.1 6.9 150 407-575 19-190 (352)
301 pfam02572 CobA_CobO_BtuR ATP:c 93.6 0.56 1.4E-05 25.7 8.4 134 415-579 6-144 (172)
302 TIGR02211 LolD_lipo_ex lipopro 93.6 0.048 1.2E-06 33.0 2.4 168 385-575 11-203 (221)
303 PRK00091 miaA tRNA delta(2)-is 93.6 0.33 8.3E-06 27.3 6.6 67 410-484 2-79 (304)
304 TIGR01187 potA polyamine ABC t 93.6 0.17 4.3E-06 29.3 5.1 169 418-613 2-197 (331)
305 PRK09700 D-allose transporter 93.6 0.32 8.1E-06 27.4 6.5 33 403-436 280-312 (510)
306 TIGR01277 thiQ thiamine ABC tr 93.6 0.11 2.9E-06 30.5 4.2 162 400-579 10-193 (213)
307 TIGR01074 rep ATP-dependent DN 93.6 0.16 4E-06 29.5 4.9 66 571-651 264-335 (677)
308 cd03229 ABC_Class3 This class 93.5 0.25 6.3E-06 28.2 5.9 127 406-575 20-162 (178)
309 PRK11308 dppF dipeptide transp 93.5 0.27 6.8E-06 27.9 6.0 28 405-432 34-61 (327)
310 PRK13549 xylose transporter AT 93.5 0.59 1.5E-05 25.6 7.9 24 408-431 284-307 (513)
311 cd03226 ABC_cobalt_CbiO_domain 93.5 0.19 4.9E-06 28.9 5.3 33 404-437 18-50 (205)
312 PRK03918 chromosome segregatio 93.5 0.068 1.7E-06 32.0 2.9 21 416-436 27-47 (882)
313 PRK07270 DNA polymerase III su 93.5 0.48 1.2E-05 26.2 7.3 26 411-436 35-61 (557)
314 PRK13638 cbiO cobalt transport 93.4 0.069 1.8E-06 31.9 2.9 43 406-453 21-63 (271)
315 COG2274 SunT ABC-type bacterio 93.4 0.44 1.1E-05 26.4 7.0 164 392-575 477-669 (709)
316 KOG0345 consensus 93.4 0.62 1.6E-05 25.4 9.7 214 414-649 45-305 (567)
317 KOG0733 consensus 93.4 0.13 3.4E-06 30.0 4.3 88 531-621 284-385 (802)
318 PTZ00209 retrotransposon hot s 93.3 0.26 6.7E-06 28.0 5.8 54 411-465 172-225 (693)
319 PRK13642 cbiO cobalt transport 93.3 0.079 2E-06 31.5 3.1 208 404-653 25-256 (277)
320 cd03217 ABC_FeS_Assembly ABC-t 93.3 0.48 1.2E-05 26.1 7.1 47 401-449 11-61 (200)
321 PRK13768 GTPase; Provisional 93.3 0.47 1.2E-05 26.2 7.0 44 414-460 4-47 (253)
322 TIGR02142 modC_ABC molybdate A 93.3 0.067 1.7E-06 32.0 2.7 197 394-620 14-263 (361)
323 PRK06645 DNA polymerase III su 93.3 0.64 1.6E-05 25.3 9.3 26 411-436 41-67 (507)
324 pfam05049 IIGP Interferon-indu 93.3 0.063 1.6E-06 32.2 2.5 26 408-433 30-56 (375)
325 pfam01695 IstB IstB-like ATP b 93.3 0.64 1.6E-05 25.3 10.3 29 411-439 46-74 (178)
326 pfam05673 DUF815 Protein of un 93.2 0.12 3.1E-06 30.2 3.9 68 370-453 21-90 (248)
327 PRK02362 ski2-like helicase; P 93.2 0.6 1.5E-05 25.5 7.5 48 528-575 345-399 (736)
328 CHL00131 ycf16 sulfate ABC tra 93.2 0.57 1.5E-05 25.6 7.3 29 406-435 26-54 (252)
329 PRK09183 transposase/IS protei 93.2 0.66 1.7E-05 25.2 10.0 28 411-438 100-127 (258)
330 cd03271 ABC_UvrA_II The excisi 93.2 0.11 2.7E-06 30.6 3.6 34 405-438 14-47 (261)
331 PRK09302 circadian clock prote 93.2 0.66 1.7E-05 25.2 10.8 127 409-574 263-402 (501)
332 PRK04301 radA DNA repair and r 93.2 0.66 1.7E-05 25.2 8.6 46 529-574 199-254 (318)
333 COG4615 PvdE ABC-type sideroph 93.1 0.055 1.4E-06 32.6 2.0 42 404-449 341-382 (546)
334 pfam01637 Arch_ATPase Archaeal 93.1 0.68 1.7E-05 25.1 8.5 42 530-571 110-153 (223)
335 PRK07471 DNA polymerase III su 93.1 0.37 9.4E-06 26.9 6.2 70 529-606 139-208 (363)
336 PTZ00243 ABC transporter; Prov 93.0 0.088 2.2E-06 31.2 2.9 27 410-436 684-710 (1560)
337 COG1125 OpuBA ABC-type proline 93.0 0.37 9.5E-06 26.9 6.1 155 409-575 24-197 (309)
338 cd03240 ABC_Rad50 The catalyti 93.0 0.41 1E-05 26.7 6.3 24 412-435 22-45 (204)
339 TIGR02198 rfaE_dom_I rfaE bifu 93.0 0.059 1.5E-06 32.4 2.0 147 293-500 75-233 (321)
340 KOG0991 consensus 92.9 0.076 1.9E-06 31.7 2.5 41 398-438 27-74 (333)
341 cd03288 ABCC_SUR2 The SUR doma 92.9 0.17 4.4E-06 29.2 4.3 40 397-437 28-71 (257)
342 PRK05564 DNA polymerase III su 92.9 0.69 1.8E-05 25.1 7.4 138 410-605 23-161 (313)
343 PRK13548 hmuV hemin importer A 92.9 0.2 5E-06 28.8 4.6 50 401-452 13-66 (257)
344 pfam02562 PhoH PhoH-like prote 92.9 0.72 1.8E-05 24.9 10.0 43 409-453 16-58 (205)
345 PRK05642 DNA replication initi 92.9 0.24 6E-06 28.3 5.0 64 532-597 100-165 (234)
346 PRK10865 protein disaggregatio 92.9 0.18 4.6E-06 29.1 4.4 62 391-452 176-242 (857)
347 COG1116 TauB ABC-type nitrate/ 92.9 0.71 1.8E-05 25.0 7.4 149 408-575 25-192 (248)
348 PRK09270 frcK putative fructos 92.8 0.14 3.6E-06 29.8 3.8 37 415-451 37-73 (230)
349 COG0467 RAD55 RecA-superfamily 92.8 0.74 1.9E-05 24.9 10.1 188 409-638 20-226 (260)
350 COG1204 Superfamily II helicas 92.8 0.4 1E-05 26.7 6.1 43 287-333 86-128 (766)
351 PRK07667 uridine kinase; Provi 92.7 0.091 2.3E-06 31.1 2.7 22 416-437 18-39 (190)
352 COG0714 MoxR-like ATPases [Gen 92.7 0.45 1.2E-05 26.3 6.2 199 396-651 27-250 (329)
353 pfam10443 RNA12 RNA12 protein. 92.7 0.58 1.5E-05 25.6 6.7 54 686-739 320-376 (428)
354 KOG2655 consensus 92.7 0.088 2.2E-06 31.2 2.5 27 414-440 23-49 (366)
355 PRK01172 ski2-like helicase; P 92.5 0.56 1.4E-05 25.7 6.5 33 552-584 353-389 (674)
356 COG3267 ExeA Type II secretory 92.5 0.82 2.1E-05 24.6 7.4 34 414-451 53-86 (269)
357 cd03114 ArgK-like The function 92.4 0.18 4.6E-06 29.1 3.9 37 415-453 2-38 (148)
358 cd00268 DEADc DEAD-box helicas 92.4 0.84 2.1E-05 24.5 9.6 40 414-453 38-78 (203)
359 cd03244 ABCC_MRP_domain2 Domai 92.3 0.12 3.1E-06 30.2 2.9 52 400-453 14-69 (221)
360 cd03290 ABCC_SUR1_N The SUR do 92.3 0.12 3.1E-06 30.2 2.9 36 401-437 12-51 (218)
361 cd03250 ABCC_MRP_domain1 Domai 92.3 0.12 2.9E-06 30.4 2.8 31 406-437 25-55 (204)
362 PRK11784 tRNA 2-selenouridine 92.3 0.08 2.1E-06 31.5 2.0 21 413-433 138-158 (333)
363 COG5019 CDC3 Septin family pro 92.3 0.1 2.7E-06 30.7 2.5 27 414-440 25-51 (373)
364 TIGR02982 heterocyst_DevA ABC 92.3 0.86 2.2E-05 24.4 9.9 168 391-575 6-203 (220)
365 cd03216 ABC_Carb_Monos_I This 92.3 0.5 1.3E-05 26.0 6.0 39 406-448 20-58 (163)
366 KOG0952 consensus 92.3 0.15 3.7E-06 29.7 3.2 56 531-586 240-298 (1230)
367 COG4178 ABC-type uncharacteriz 92.2 0.57 1.4E-05 25.7 6.2 153 401-579 404-579 (604)
368 PRK09435 arginine/ornithine tr 92.1 0.22 5.5E-06 28.5 4.0 37 415-453 52-88 (325)
369 pfam00580 UvrD-helicase UvrD/R 92.1 0.66 1.7E-05 25.2 6.4 14 530-543 213-226 (494)
370 PRK07429 phosphoribulokinase; 92.1 0.17 4.4E-06 29.2 3.4 213 415-654 11-280 (331)
371 TIGR01271 CFTR_protein cystic 92.1 0.1 2.6E-06 30.8 2.2 110 400-515 436-562 (1534)
372 PRK10982 galactose/methyl gala 92.1 0.78 2E-05 24.7 6.8 33 404-437 266-298 (491)
373 pfam03205 MobB Molybdopterin g 92.1 0.34 8.6E-06 27.2 4.9 46 413-459 1-46 (122)
374 cd02026 PRK Phosphoribulokinas 92.0 0.18 4.6E-06 29.1 3.5 33 415-451 2-34 (273)
375 pfam03308 ArgK ArgK protein. T 92.0 0.23 5.9E-06 28.3 4.1 38 414-453 31-68 (267)
376 TIGR01631 Trypano_RHS trypanos 92.0 0.72 1.8E-05 24.9 6.5 76 411-486 306-383 (814)
377 COG0178 UvrA Excinuclease ATPa 92.0 0.17 4.4E-06 29.2 3.3 29 413-441 628-656 (935)
378 PHA00350 putative assembly pro 92.0 0.11 2.9E-06 30.4 2.4 55 532-588 84-157 (402)
379 PRK13545 tagH teichoic acids e 92.0 0.88 2.2E-05 24.3 6.9 154 405-573 43-202 (549)
380 COG4987 CydC ABC-type transpor 91.9 0.12 3E-06 30.4 2.4 63 405-469 357-426 (573)
381 KOG0054 consensus 91.9 0.15 3.7E-06 29.7 2.9 30 407-436 542-571 (1381)
382 PRK11288 araG L-arabinose tran 91.9 0.95 2.4E-05 24.1 8.0 32 404-436 271-302 (501)
383 TIGR03167 tRNA_sel_U_synt tRNA 91.9 0.13 3.3E-06 30.1 2.6 24 412-435 127-150 (311)
384 cd03247 ABCC_cytochrome_bd The 91.9 0.14 3.7E-06 29.8 2.8 48 396-447 8-59 (178)
385 cd03254 ABCC_Glucan_exporter_l 91.9 0.15 3.7E-06 29.7 2.9 36 401-437 14-53 (229)
386 KOG0064 consensus 91.8 0.98 2.5E-05 24.0 8.6 150 399-575 491-670 (728)
387 PRK10522 multidrug transporter 91.8 0.088 2.2E-06 31.2 1.7 52 405-460 342-395 (547)
388 PRK05917 DNA polymerase III su 91.7 0.77 2E-05 24.7 6.4 35 410-444 16-51 (290)
389 PRK09580 sufC cysteine desulfu 91.7 0.2 5.1E-06 28.7 3.5 47 398-446 9-59 (248)
390 pfam03354 Terminase_1 Phage Te 91.7 0.99 2.5E-05 24.0 7.8 140 415-579 25-169 (473)
391 PRK13631 cbiO cobalt transport 91.7 0.15 3.9E-06 29.6 2.8 208 405-653 45-292 (320)
392 pfam00485 PRK Phosphoribulokin 91.7 0.17 4.4E-06 29.2 3.0 22 415-436 2-23 (196)
393 TIGR01166 cbiO cobalt ABC tran 91.7 0.36 9.1E-06 27.0 4.6 156 407-572 13-185 (190)
394 PRK07773 replicative DNA helic 91.6 1 2.6E-05 23.9 8.4 29 412-440 203-231 (868)
395 cd02024 NRK1 Nicotinamide ribo 91.6 0.15 3.7E-06 29.7 2.6 22 415-436 2-23 (187)
396 cd03231 ABC_CcmA_heme_exporter 91.6 0.21 5.5E-06 28.6 3.5 42 396-438 6-51 (201)
397 PRK01156 chromosome segregatio 91.6 0.17 4.3E-06 29.3 2.9 15 417-431 28-42 (895)
398 pfam10923 DUF2791 Protein of u 91.6 0.49 1.2E-05 26.1 5.3 97 470-571 33-138 (267)
399 pfam03266 DUF265 Protein of un 91.6 1 2.6E-05 23.9 11.0 24 414-437 1-24 (168)
400 COG0593 DnaA ATPase involved i 91.5 0.32 8.3E-06 27.3 4.3 28 412-439 113-140 (408)
401 cd03223 ABCD_peroxisomal_ALDP 91.5 0.17 4.4E-06 29.2 2.9 44 401-448 12-59 (166)
402 cd03260 ABC_PstB_phosphate_tra 91.5 0.33 8.5E-06 27.3 4.4 151 407-575 21-201 (227)
403 cd03115 SRP The signal recogni 91.5 0.54 1.4E-05 25.8 5.4 69 415-485 3-75 (173)
404 PRK13850 type IV secretion sys 91.4 0.96 2.4E-05 24.1 6.7 112 530-647 390-542 (670)
405 PRK08727 hypothetical protein; 91.4 0.59 1.5E-05 25.5 5.6 42 532-575 96-137 (233)
406 pfam09140 MipZ ATPase MipZ. Mi 91.4 0.6 1.5E-05 25.5 5.6 86 531-621 125-229 (261)
407 TIGR00630 uvra excinuclease AB 91.3 0.23 5.9E-06 28.3 3.4 122 357-508 625-759 (956)
408 cd00561 CobA_CobO_BtuR ATP:cor 91.2 1.1 2.8E-05 23.6 7.0 134 415-579 5-143 (159)
409 COG0324 MiaA tRNA delta(2)-iso 91.2 0.57 1.4E-05 25.7 5.3 73 411-490 2-87 (308)
410 PRK11264 putative amino-acid A 91.2 0.21 5.5E-06 28.6 3.1 41 405-449 20-60 (248)
411 PRK09694 hypothetical protein; 91.2 0.9 2.3E-05 24.3 6.3 76 491-575 408-483 (878)
412 PRK02224 chromosome segregatio 91.2 0.24 6.2E-06 28.2 3.4 23 414-436 25-47 (880)
413 PRK05986 cob(I)yrinic acid a,c 91.1 1.1 2.9E-05 23.6 8.7 134 414-579 24-162 (190)
414 pfam04317 DUF463 YcjX-like fam 91.1 0.19 4.8E-06 29.0 2.8 88 435-542 180-270 (443)
415 COG1201 Lhr Lhr-like helicases 91.1 1.1 2.9E-05 23.6 8.2 17 411-427 36-52 (814)
416 COG4988 CydD ABC-type transpor 91.1 0.39 1E-05 26.8 4.4 64 403-468 338-408 (559)
417 PRK10253 iron-enterobactin tra 91.1 0.22 5.7E-06 28.4 3.2 54 392-449 13-66 (265)
418 PRK11331 5-methylcytosine-spec 91.1 1.1 2.9E-05 23.6 7.1 51 403-453 185-235 (459)
419 PTZ00112 origin recognition co 91.1 0.1 2.6E-06 30.7 1.4 119 412-570 293-417 (650)
420 cd02023 UMPK Uridine monophosp 91.1 0.33 8.4E-06 27.3 4.0 22 415-436 2-23 (198)
421 PRK11819 putative ABC transpor 91.1 0.64 1.6E-05 25.3 5.5 40 405-448 343-382 (556)
422 COG4525 TauB ABC-type taurine 91.0 0.39 9.8E-06 26.8 4.3 44 405-453 24-67 (259)
423 TIGR01448 recD_rel helicase, R 91.0 0.98 2.5E-05 24.0 6.4 223 406-668 359-601 (769)
424 TIGR03185 DNA_S_dndD DNA sulfu 91.0 0.23 5.9E-06 28.3 3.2 24 413-436 29-52 (650)
425 PRK09376 rho transcription ter 91.0 1.2 3E-05 23.5 9.1 184 407-649 164-383 (416)
426 COG4598 HisP ABC-type histidin 90.9 0.14 3.6E-06 29.8 2.0 23 411-433 31-53 (256)
427 cd04154 Arl2 Arl2 subfamily. 90.9 0.69 1.8E-05 25.1 5.5 32 411-442 13-44 (173)
428 PRK09536 btuD corrinoid ABC tr 90.8 0.8 2E-05 24.6 5.8 53 392-448 8-60 (409)
429 TIGR01967 DEAH_box_HrpA ATP-de 90.7 0.13 3.2E-06 30.1 1.6 22 414-435 86-107 (1320)
430 PRK10636 putative ABC transpor 90.7 0.24 6.1E-06 28.2 3.0 40 404-447 330-369 (638)
431 cd03241 ABC_RecN RecN ATPase i 90.7 0.17 4.3E-06 29.3 2.2 32 414-445 23-54 (276)
432 PRK13543 cytochrome c biogenes 90.7 0.3 7.7E-06 27.5 3.5 49 396-448 17-69 (214)
433 pfam04851 ResIII Type III rest 90.6 0.46 1.2E-05 26.3 4.4 27 411-437 17-43 (103)
434 PRK06674 DNA polymerase III su 90.6 0.94 2.4E-05 24.2 6.0 93 336-451 52-156 (563)
435 PRK10869 recombination and rep 90.6 0.18 4.6E-06 29.1 2.3 33 618-650 413-445 (553)
436 COG4928 Predicted P-loop ATPas 90.6 0.51 1.3E-05 26.0 4.6 32 403-434 42-74 (646)
437 PRK13547 hmuV hemin importer A 90.5 0.26 6.5E-06 28.0 3.0 37 400-437 11-51 (273)
438 PRK00254 ski2-like helicase; P 90.4 0.56 1.4E-05 25.7 4.7 23 551-573 361-387 (717)
439 PRK08533 flagellar accessory p 90.4 1.3 3.4E-05 23.1 8.4 29 411-439 23-51 (230)
440 PRK12678 transcription termina 90.3 1.3 3.4E-05 23.1 9.1 53 409-461 408-460 (667)
441 cd03214 ABC_Iron-Siderophores_ 90.2 0.33 8.5E-06 27.2 3.4 44 401-448 10-57 (180)
442 COG4619 ABC-type uncharacteriz 90.2 0.35 8.9E-06 27.1 3.5 144 407-575 24-195 (223)
443 PRK10733 hflB ATP-dependent me 90.2 1.4 3.5E-05 23.0 6.6 74 531-606 246-332 (644)
444 pfam00350 Dynamin_N Dynamin fa 90.1 0.21 5.4E-06 28.6 2.3 21 415-435 1-21 (168)
445 COG3638 ABC-type phosphate/pho 90.1 0.26 6.7E-06 28.0 2.8 32 403-434 21-52 (258)
446 COG1855 ATPase (PilT family) [ 90.1 0.22 5.6E-06 28.5 2.4 27 411-437 262-288 (604)
447 PRK13764 ATPase; Provisional 90.1 0.36 9.3E-06 27.0 3.5 27 411-437 258-284 (605)
448 PRK11147 ABC transporter ATPas 90.1 0.29 7.3E-06 27.7 3.0 42 401-446 330-375 (632)
449 PRK09544 znuC high-affinity zi 90.0 0.33 8.3E-06 27.3 3.2 57 392-453 10-66 (251)
450 PRK11231 fecE iron-dicitrate t 90.0 0.32 8.2E-06 27.4 3.2 49 392-448 8-60 (255)
451 cd03236 ABC_RNaseL_inhibitor_d 90.0 0.6 1.5E-05 25.5 4.5 30 414-447 28-57 (255)
452 TIGR01184 ntrCD nitrate ABC tr 90.0 1.4 3.5E-05 23.0 6.4 145 410-573 9-174 (230)
453 cd03218 ABC_YhbG The ABC trans 90.0 1.4 3.6E-05 22.9 9.5 40 406-449 20-59 (232)
454 PRK13897 type IV secretion sys 89.9 0.6 1.5E-05 25.5 4.5 84 362-454 107-193 (628)
455 TIGR00972 3a0107s01c2 phosphat 89.9 0.2 5E-06 28.8 2.0 43 392-434 7-49 (248)
456 COG1660 Predicted P-loop-conta 89.8 0.26 6.6E-06 28.0 2.6 30 412-451 1-30 (286)
457 PRK05480 uridine kinase; Provi 89.8 0.49 1.3E-05 26.1 4.0 33 415-451 9-41 (209)
458 cd03268 ABC_BcrA_bacitracin_re 89.8 1.1 2.9E-05 23.6 5.8 44 407-452 21-64 (208)
459 cd03237 ABC_RNaseL_inhibitor_d 89.8 1.5 3.8E-05 22.8 8.8 37 414-455 27-63 (246)
460 CHL00095 clpC Clp protease ATP 89.8 1.1 2.8E-05 23.7 5.8 60 392-451 178-242 (823)
461 KOG0054 consensus 89.7 0.21 5.3E-06 28.7 2.0 47 412-460 1166-1212(1381)
462 COG0488 Uup ATPase components 89.7 1.4 3.7E-05 22.9 6.3 19 412-430 29-47 (530)
463 PRK11537 putative GTP-binding 89.7 0.44 1.1E-05 26.4 3.7 225 409-650 1-249 (317)
464 cd02028 UMPK_like Uridine mono 89.7 0.35 8.8E-06 27.1 3.1 23 415-437 2-24 (179)
465 KOG0057 consensus 89.7 0.37 9.5E-06 26.9 3.3 55 405-462 371-425 (591)
466 cd01133 F1-ATPase_beta F1 ATP 89.6 1.5 3.9E-05 22.7 8.5 52 407-459 64-115 (274)
467 PRK04220 2-phosphoglycerate ki 89.6 0.31 8E-06 27.4 2.8 17 412-428 91-108 (306)
468 PTZ00243 ABC transporter; Prov 89.5 0.24 6.2E-06 28.2 2.2 12 636-647 1410-1421(1560)
469 PRK08084 DNA replication initi 89.5 1 2.6E-05 24.0 5.4 64 532-597 100-166 (235)
470 COG1127 Ttg2A ABC-type transpo 89.5 0.32 8.2E-06 27.3 2.9 41 405-449 27-67 (263)
471 KOG1532 consensus 89.5 0.39 1E-05 26.7 3.3 45 411-457 18-62 (366)
472 COG0610 Type I site-specific r 89.4 0.12 3.1E-06 30.2 0.7 40 415-455 276-315 (962)
473 cd03235 ABC_Metallic_Cations A 89.4 0.43 1.1E-05 26.5 3.5 54 392-447 5-58 (213)
474 cd00878 Arf_Arl Arf (ADP-ribos 89.4 0.26 6.5E-06 28.0 2.3 23 415-437 2-24 (158)
475 TIGR03346 chaperone_ClpB ATP-d 89.4 0.62 1.6E-05 25.4 4.2 52 392-443 172-225 (852)
476 PRK06696 uridine kinase; Valid 89.4 0.54 1.4E-05 25.8 3.9 37 415-452 29-65 (227)
477 COG1703 ArgK Putative periplas 89.3 0.51 1.3E-05 26.0 3.8 37 415-453 54-90 (323)
478 TIGR03420 DnaA_homol_Hda DnaA 89.3 0.69 1.8E-05 25.1 4.4 44 532-577 93-136 (226)
479 cd03238 ABC_UvrA The excision 89.3 0.36 9.1E-06 27.0 3.0 29 405-433 14-42 (176)
480 PRK11147 ABC transporter ATPas 89.3 0.41 1E-05 26.6 3.3 18 413-430 30-47 (632)
481 TIGR00960 3a0501s02 Type II (G 89.3 0.31 7.9E-06 27.5 2.6 155 404-573 21-197 (216)
482 cd03266 ABC_NatA_sodium_export 89.3 0.54 1.4E-05 25.8 3.9 42 407-452 26-69 (218)
483 COG1123 ATPase components of v 89.3 1.6 4.1E-05 22.6 11.5 199 391-609 10-247 (539)
484 TIGR02315 ABC_phnC phosphonate 89.1 0.23 5.9E-06 28.3 1.9 35 410-445 26-60 (253)
485 pfam02492 cobW CobW/HypB/UreG, 89.0 0.72 1.8E-05 25.0 4.3 40 413-455 1-40 (174)
486 COG2874 FlaH Predicted ATPases 88.9 1.7 4.3E-05 22.4 7.4 149 414-597 30-192 (235)
487 PRK08903 hypothetical protein; 88.9 1.7 4.3E-05 22.4 6.2 24 413-436 43-66 (227)
488 PRK05563 DNA polymerase III su 88.9 1.6 4E-05 22.6 6.0 153 299-486 26-192 (541)
489 PRK10762 D-ribose transporter 88.8 0.45 1.2E-05 26.3 3.2 34 403-437 269-302 (501)
490 pfam03215 Rad17 Rad17 cell cyc 88.8 1.7 4.4E-05 22.3 6.4 30 423-452 142-171 (490)
491 PRK13540 cytochrome c biogenes 88.7 0.52 1.3E-05 25.9 3.4 48 396-447 7-58 (200)
492 TIGR02857 CydD ABC transporter 88.6 0.37 9.4E-06 26.9 2.6 35 411-449 377-411 (570)
493 COG4555 NatA ABC-type Na+ tran 88.6 1.8 4.5E-05 22.3 6.8 35 413-451 29-63 (245)
494 smart00763 AAA_PrkA PrkA AAA d 88.6 1.1 2.9E-05 23.6 5.1 39 415-453 81-119 (361)
495 PRK06217 hypothetical protein; 88.6 0.48 1.2E-05 26.2 3.2 25 412-436 1-25 (185)
496 PRK08118 topology modulation p 88.5 0.38 9.6E-06 26.9 2.6 23 412-434 1-23 (167)
497 TIGR03598 GTPase_YsxC ribosome 88.5 0.4 1E-05 26.7 2.7 24 411-434 17-40 (179)
498 COG0497 RecN ATPase involved i 88.5 0.32 8.2E-06 27.3 2.3 30 414-443 24-53 (557)
499 PRK10895 putative ABC transpor 88.4 0.55 1.4E-05 25.8 3.4 38 396-433 9-50 (241)
500 PRK10636 putative ABC transpor 88.4 0.42 1.1E-05 26.5 2.8 18 295-312 186-203 (638)
No 1
>PRK10263 DNA translocase FtsK; Provisional
Probab=100.00 E-value=0 Score=1357.93 Aligned_cols=476 Identities=49% Similarity=0.802 Sum_probs=444.0
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 01122221134543101111110078899889999998740355138986764892589997548886399998599999
Q gi|254780606|r 263 QKQYEQPCSSFLQVQSNVNLQGITHEILEKNAGSLETILEEFGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVIGLADDI 342 (744)
Q Consensus 263 ~~~yelPp~~LL~~p~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gp~~~~~~~~~~~g~~~~~~~~~~~d~ 342 (744)
++...+|+++||..++.. .+.++.+.|++++++||.+|.+|||+|+|+++++||+||||||+|++|||+|||+||++||
T Consensus 861 ~p~~~lp~l~ll~~~~~~-~~~~~~~~l~~~arl~E~~L~df~V~a~Vv~i~pGPvVTryEl~papGVKvsrI~~L~dDl 939 (1355)
T PRK10263 861 KPTTPLPSLDLLTPPPSE-VEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDL 939 (1355)
T ss_pred CCCCCCCCHHHCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 999999865424698413-5878899999999999998763394289998723986787654058985065531089999
Q ss_pred HHHHCCCCCEE-EEECCCCEEEEECCCCCCCEEEHHHHHCCHHHCCCCCCEEEEEEECCCCCEEECCHHHCCCEEEEECC
Q ss_conf 98714776327-75189834544268888870765875128121146783689842057887321120114846997078
Q gi|254780606|r 343 ARSMSSLSARV-AVIPKRNAIGIELPNETRETVYLRQIIESRSFSHSKANLALCLGKTISGESVIADLANMPHILVAGTT 421 (744)
Q Consensus 343 ~~~~~~~~~~~-~~~pg~~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~l~~~~g~~~~g~~~~~dl~~~PH~lvaG~T 421 (744)
||+|++.+||| +|||||++|||||||.+|++|+|||+|++..|++++++|+++|||||.|++++.||+|||||||||+|
T Consensus 940 A~aLsa~sVRI~apIPGK~~VGIEvPN~~r~~V~lrevl~s~~f~~~~s~L~~aLGKDI~G~pvv~DLaKMPHLLIAGtT 1019 (1355)
T PRK10263 940 ARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTT 1019 (1355)
T ss_pred HHHHCCCCEEEEECCCCCCEEEEECCCCCCCEEEHHHHHCCHHHHCCCCCCEEEECCCCCCCEEEEEHHHCCCEEEECCC
T ss_conf 99722676069811699875568899898874755875558423227997426513666798877474219711340467
Q ss_pred CCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 75344799999999998568011079997234210001257752000044441787689999998667699999980778
Q gi|254780606|r 422 GSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEERYRKMSHLSVR 501 (744)
Q Consensus 422 gsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r~~~~~~~~~~ 501 (744)
|||||||||+||+||||+++|++|||+|||||++||+.|++||||+++||||+++|+.+|+|+|.||||||++|++.|||
T Consensus 1020 GSGKSV~iNsmI~SlLyk~~PdevrlImIDPKmvELs~Y~gIPHLL~PVVTDpkkA~~AL~W~V~EMErRY~l~a~~gVR 1099 (1355)
T PRK10263 1020 GSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVR 1099 (1355)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHEEEEEECCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 88830439999999984388879479986687453146799973577673787999999999999999999999981998
Q ss_pred CHHHHHHHHHHHHCCC-------------CCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 6799999886420267-------------766654323386799984456876753103589999999996420135899
Q gi|254780606|r 502 NIKSYNERISTMYGEK-------------PQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLI 568 (744)
Q Consensus 502 ~i~~~n~~~~~~~~~~-------------~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihli 568 (744)
||.+||+|+....... .......+++||||||||||||||||++++++|++|+||||||||+|||||
T Consensus 1100 NI~gYN~kv~~a~~~g~pi~dp~~~~~d~~~~~~p~leklPyIVViIDElADLMM~agkeVE~~I~RLAQkARAaGIHLI 1179 (1355)
T PRK10263 1100 NLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLV 1179 (1355)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHHCEEE
T ss_conf 87999999998775068777633467654334666557898699997336275362628799999999999998742378
Q ss_pred EEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCCCCEEEECC-CCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 98516544441467885056305720368111003267631688568984686468-98438999343898899999999
Q gi|254780606|r 569 MATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDMLYMSG-GGRIQRVHGPLVSDIEIEKVVQH 647 (744)
Q Consensus 569 latQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~gd~l~~~~-~~~~~r~~~~~~~~~~~~~~~~~ 647 (744)
|||||||+|||||+||||||+||||+|+|++|||||||+.|||+|||+|||||+++ +++++|+||+||||+||++||+|
T Consensus 1180 lATQRPSVDVITGlIKANiPtRIAF~VsSkiDSRTILD~~GAE~LLG~GDMLf~~pg~~~p~RvqGafVsD~EV~~VV~~ 1259 (1355)
T PRK10263 1180 LATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQD 1259 (1355)
T ss_pred EECCCCCCCEECCCEECCCHHHHEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 72489986700462433432331000344566351078758888558976442379999841777786688999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 98408875311112455554444566777777766038999999997498623220000010078999999999987975
Q gi|254780606|r 648 LKKQGCPEYLNTVTTDTDTDKDGNNFDSEEKKERSNLYAKAVDLVIDNQRCSTSFIQRRLQIGYNRAALLVERMEQEGLV 727 (744)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~qr~~~~g~~ra~~~~~~~e~~g~~ 727 (744)
||.|++|+|++.+......+.++ ++..+.++.|+||+||++||++++++|||+|||||||||||||||||+||++|||
T Consensus 1260 ~k~qg~p~Y~~~i~~~~~~~~~~--~~~~~~~e~D~L~~qAv~~V~~~~~aS~S~lQRrlrIGYnRAARiid~mE~~GIV 1337 (1355)
T PRK10263 1260 WKARGRPQYVDGITSDSESEGGA--GGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIV 1337 (1355)
T ss_pred HHHCCCCCCCHHCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCC
T ss_conf 98628976311014554445677--7777776566799999999986294328998763134335899999999977884
Q ss_pred CHHHCCCCCCCEEE
Q ss_conf 70216886232110
Q gi|254780606|r 728 SEADHVGKRHVFSE 741 (744)
Q Consensus 728 ~~~~~~~~r~~~~~ 741 (744)
|+++|+|+||||+.
T Consensus 1338 s~~~~~g~REVLap 1351 (1355)
T PRK10263 1338 SEQGHNGNREVLAP 1351 (1355)
T ss_pred CCCCCCCCCCCCCC
T ss_conf 68889988634589
No 2
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=100.00 E-value=0 Score=947.72 Aligned_cols=472 Identities=44% Similarity=0.606 Sum_probs=437.4
Q ss_pred CCCCCCCCCCHHHHHHHC-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCHHHHHHHH
Q ss_conf 000112222113454310-1111110078899889999998740355138986764892589997548886399998599
Q gi|254780606|r 261 KGQKQYEQPCSSFLQVQS-NVNLQGITHEILEKNAGSLETILEEFGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVIGLA 339 (744)
Q Consensus 261 ~~~~~yelPp~~LL~~p~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gp~~~~~~~~~~~g~~~~~~~~~~ 339 (744)
.....|.+|.+.+|.... +......+..++..++.+|+.+|.+|+|.|+++++..||+||+||++|++|||++||++|.
T Consensus 376 ~~~~~~~lP~l~ll~~~~~~~~~~~~~~~~l~~~~~~l~~sl~~f~i~a~~~~~~~gp~vt~yei~l~~gvk~~~i~~L~ 455 (858)
T COG1674 376 RGKDTPPLPHLFLIADEFAELKSEHPDFAELLVSIARLGRSLGIHLILATQKPDGVGPSNTRFEIALKVGVKVDSIEILG 455 (858)
T ss_pred CCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCEEEEEEECCCCHHHHHHHCC
T ss_conf 56887889822120554322345774778899999999887886443578960567885126998645662166776047
Q ss_pred HHHHHHHCCCCCEE-EEECCCCEEEEECCCCC-CCEEEHHHHHCCHHHCCCCCCEEEEEEECCCCCEEECCHHHCCCEEE
Q ss_conf 99998714776327-75189834544268888-87076587512812114678368984205788732112011484699
Q gi|254780606|r 340 DDIARSMSSLSARV-AVIPKRNAIGIELPNET-RETVYLRQIIESRSFSHSKANLALCLGKTISGESVIADLANMPHILV 417 (744)
Q Consensus 340 ~d~~~~~~~~~~~~-~~~pg~~~~~~~~p~~~-~~~v~~~~~~~~~~~~~~~~~l~~~~g~~~~g~~~~~dl~~~PH~lv 417 (744)
+|+|++|.+.++|+ +|||||++||||+||.. +++|+|+|++.+..|.+....|.+++|+|+.|+++++||++|||+||
T Consensus 456 ~d~A~~L~~~~~ri~~~ipgk~~igie~pn~~~~~~~~L~e~~~~~~~~~~~~~l~i~lg~~~~~~~~~~dlak~~hlli 535 (858)
T COG1674 456 NDDAAALVAKSRRYLAPIPGKSYIGFQSPNSGRPWLPPLRELLDLDEFLERFPLGVIDLPKDIRQEPIVIDLAKAGHLLI 535 (858)
T ss_pred CHHHHHCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCHHHCCCCHHHHCCCCCEEECCCHHCCCCCEEEECCCCCCEEE
T ss_conf 37788501446058987479753789746889867787121035234532465147525100368813855356888788
Q ss_pred EECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7078753447999999999985680110799972342100012577520000444417-876899999986676999999
Q gi|254780606|r 418 AGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPK-KAVMALKWAVREMEERYRKMS 496 (744)
Q Consensus 418 aG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~-~~~~~l~~~~~em~~r~~~~~ 496 (744)
+|+||||||||||+||+||+|+++|++|+|+|||||+++|+.|++|||+.++|+||++ ++..+|+|++.||++||++|.
T Consensus 536 ~G~tgsGKSv~lnt~i~Sll~~~~P~ev~~~~iD~k~~~L~~~~~iPHl~~~v~td~~~k~~~al~~~~~eme~R~~l~~ 615 (858)
T COG1674 536 AGATGSGKSVALNTMILSLLYTHSPEEVRFYIIDPKMLELAAYDGLPHLGDPVVTDEKEKAEKALAELVAEMERRYKLFS 615 (858)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCHHEEEEEECCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 24888651558999999987518906849999747875433330698557723247477899999999999999999888
Q ss_pred HCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCC
Q ss_conf 80778679999988642026776665432338679998445687675310358999999999642013589998516544
Q gi|254780606|r 497 HLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSV 576 (744)
Q Consensus 497 ~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~ 576 (744)
+.++|||.+||+|+... ....+|||||||||||+||||..++++|+.|.||||+|||+|||||||||||++
T Consensus 616 ~~~vr~i~~yn~k~~~~---------~~~~~lP~iviiiDe~adlm~~~~k~ve~~i~rLa~~ara~GIHlilatqRps~ 686 (858)
T COG1674 616 EKGVRNIEGYNEKIAGA---------IPDEELPYIVIIIDEYADLMMVAGKELEELIARLAQKGRAAGIHLILATQRPSV 686 (858)
T ss_pred HHCCCCHHHHHHHHCCC---------CCCCCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 85666277776542024---------555679808999444788861231769999999999787658269997489995
Q ss_pred CCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCCCCEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 4414678850563057203681110032676316885689846864689-843899934389889999999998408875
Q gi|254780606|r 577 DVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDMLYMSGG-GRIQRVHGPLVSDIEIEKVVQHLKKQGCPE 655 (744)
Q Consensus 577 ~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~gd~l~~~~~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (744)
||++| ||+|||+||+|+|+|++|||+|||+.|||+|+|+|||||+.++ ++++|+||+||||+|++++|+|+|.|+.|.
T Consensus 687 dVit~-ikan~psrIaf~v~s~~dsr~il~~~gae~l~GrGd~l~~~~~~~~pvr~~~~fvsd~ev~~v~~~~k~~~~p~ 765 (858)
T COG1674 687 DVITG-IKANIPTRIALRLSSKIDSRLILGQDGAEKLLGRGDMLFLGPGDAKPVRVLPAFVSDEEVEEVVEHLKSQVEPV 765 (858)
T ss_pred CHHHH-HHHCCCCCEEEEECCCCCEEEEECCCHHHHCCCCCEEECCCCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCE
T ss_conf 04088-88538752566516876525662455063088854242157889886026654004888888630023137732
Q ss_pred CCCCCCCCCCCCCCC-CCCC--CCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHC
Q ss_conf 311112455554444-5667--7777776603899999999749862322000001007899999999998797570216
Q gi|254780606|r 656 YLNTVTTDTDTDKDG-NNFD--SEEKKERSNLYAKAVDLVIDNQRCSTSFIQRRLQIGYNRAALLVERMEQEGLVSEADH 732 (744)
Q Consensus 656 ~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~s~~qr~~~~g~~ra~~~~~~~e~~g~~~~~~~ 732 (744)
|.+..........+. .... ....++.|+||++|++++++.+++|+|+|||+|+||||||||+||+||..||||+++|
T Consensus 766 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~a~~~v~~~~~~S~s~lqr~~~iG~~raa~~~~~~e~~giv~~~~~ 845 (858)
T COG1674 766 YLDLATNPHLLISGETTVLRAIDREEEAMDELFDEAKELVLPPPKASTSLLQRALDLGLNRAATLIESMELLGIVGPPNG 845 (858)
T ss_pred EEECCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEEEECCCCCCHHHCEECCCCC
T ss_conf 44235675420135310022210110110389999998624721137898720626781776042221213134346457
Q ss_pred CCCCCCEEEC
Q ss_conf 8862321103
Q gi|254780606|r 733 VGKRHVFSEK 742 (744)
Q Consensus 733 ~~~r~~~~~~ 742 (744)
+|+||||+..
T Consensus 846 ~~~reil~~~ 855 (858)
T COG1674 846 PKGREILVVE 855 (858)
T ss_pred CCCCEEEECC
T ss_conf 9985276267
No 3
>pfam01580 FtsK_SpoIIIE FtsK/SpoIIIE family. FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Probab=100.00 E-value=0 Score=351.82 Aligned_cols=197 Identities=48% Similarity=0.786 Sum_probs=179.2
Q ss_pred HHHHHCCHHHCCCCCCEEEEEEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCC
Q ss_conf 58751281211467836898420578873211201148469970787534479999999999856801107999723421
Q gi|254780606|r 376 LRQIIESRSFSHSKANLALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKML 455 (744)
Q Consensus 376 ~~~~~~~~~~~~~~~~l~~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~ 455 (744)
+.+++....|....+.|++++|.|..|+|+++||.+.||+||+|+||||||+||+++|+||+++|+|++++|++||||++
T Consensus 2 ~~~~~~~~~~~~~~~~l~vp~G~~~~G~pv~~dl~~~pH~Lv~G~tGsGKS~~l~~li~sl~~~~~p~~v~l~liD~K~~ 81 (202)
T pfam01580 2 LKELLDGKPFRGSRSRLTIALGKDISGNPVVADLVKMPHLLIAGATGSGKSTFLNTLILSLAARHSPEEVRLYLIDPKGG 81 (202)
T ss_pred HHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 67861692001689961487776799998998635688689965899980099999999998737962069999748961
Q ss_pred EECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEH
Q ss_conf 00012577520000444417876899999986676999999807786799999886420267766654323386799984
Q gi|254780606|r 456 ELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIV 535 (744)
Q Consensus 456 ~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvvi 535 (744)
+|..|.++||+...+++|.+.+..+|+|++.||++||++|++.+++|+..||.+........ .....++|+|||||
T Consensus 82 ~~~~~~~~~h~~~~~~~d~e~~~~~l~~l~~em~rR~~ll~~~g~~~i~~~~~~~~~~~~~~----~~~~~~~p~ivvvi 157 (202)
T pfam01580 82 ELAALEDLPHLLSAVATDPEDALSALRALVAEMERRYALLKQLGVRSIEEYNGEIAEDILGG----AGWLEELPPIVVIV 157 (202)
T ss_pred CHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC----CCCCCCCCCEEEEE
T ss_conf 26767635654433768999999999999999999999999838876899999866432124----55433478189864
Q ss_pred HHHHHHHHHCCH----HHHHHHHHHHHHHHCCEEEEEEEECCCCC
Q ss_conf 456876753103----58999999999642013589998516544
Q gi|254780606|r 536 DEMADLMMVAGK----EIEGAIQRLAQMARAAGIHLIMATQRPSV 576 (744)
Q Consensus 536 DE~a~l~~~~~~----~~e~~~~~la~~~ra~GihlilatQrp~~ 576 (744)
|||++|+...++ +++..+.+|||+||++|||||+|||||++
T Consensus 158 DE~~~l~~~~~~~~~~~~~~~l~~iar~GRa~GihlilatQrP~~ 202 (202)
T pfam01580 158 DERAELMLAAPKDSEMRVEGALARLARMGRAAGIHLLLATQRPGV 202 (202)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC
T ss_conf 459999865550468999999999999887338299998189999
No 4
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=99.89 E-value=3.1e-24 Score=185.24 Aligned_cols=63 Identities=49% Similarity=0.808 Sum_probs=60.6
Q ss_pred CCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEE
Q ss_conf 776603899999999749862322000001007899999999998797570216886232110
Q gi|254780606|r 679 KERSNLYAKAVDLVIDNQRCSTSFIQRRLQIGYNRAALLVERMEQEGLVSEADHVGKRHVFSE 741 (744)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~s~s~~qr~~~~g~~ra~~~~~~~e~~g~~~~~~~~~~r~~~~~ 741 (744)
++.|+||++|++||++++++|+|+|||||+|||||||||||+||++|||||++|+|+||||+.
T Consensus 1 ~~~D~l~~~a~~~V~~~~~~S~S~lQR~l~IGynRAariid~lE~~GiVsp~~g~~~ReVL~~ 63 (63)
T smart00843 1 EEEDELYDEAVELVIETQKASTSLLQRRLRIGYNRAARLIDQLEEEGIVGPANGSKPREVLVT 63 (63)
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECC
T ss_conf 963289999999999808624899999972050699999999999858788779999834249
No 5
>pfam09397 Ftsk_gamma Ftsk gamma domain. This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=99.89 E-value=5.4e-24 Score=183.54 Aligned_cols=65 Identities=51% Similarity=0.802 Sum_probs=61.9
Q ss_pred CCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEC
Q ss_conf 77766038999999997498623220000010078999999999987975702168862321103
Q gi|254780606|r 678 KKERSNLYAKAVDLVIDNQRCSTSFIQRRLQIGYNRAALLVERMEQEGLVSEADHVGKRHVFSEK 742 (744)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~s~s~~qr~~~~g~~ra~~~~~~~e~~g~~~~~~~~~~r~~~~~~ 742 (744)
.++.|+||++|++||++++++|||+|||+|+|||||||||||+||+.|||||++|+|+|+||+..
T Consensus 2 ~~~~D~l~~~a~~~V~~~~~~S~S~lQR~~~IGynRAariid~LE~~GiVsp~~g~~~ReVL~~~ 66 (67)
T pfam09397 2 DEEEDELYDEAVEFVIETQKASTSLLQRRLRIGYNRAARLIEQMEEEGIVGPANGSKPREVLVPK 66 (67)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCC
T ss_conf 74203899999999998186348999999710506999999999998488887789885050899
No 6
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=99.61 E-value=3.4e-16 Score=130.11 Aligned_cols=221 Identities=33% Similarity=0.480 Sum_probs=165.5
Q ss_pred CEEEEEEECC-CCCEEECCHHH----CCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEE-CCCCCCC
Q ss_conf 3689842057-88732112011----4846997078753447999999999985680110799972342100-0125775
Q gi|254780606|r 391 NLALCLGKTI-SGESVIADLAN----MPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLEL-SVYDGIP 464 (744)
Q Consensus 391 ~l~~~~g~~~-~g~~~~~dl~~----~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~-~~~~~~p 464 (744)
.+.+.+|... .++....++.. .||.+++|+||+|||.++ +.+.++...++++++.++++|+|+... ..+.+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~e~~-~~~~~~~~~~~~~e~~~~~~~~k~~~~~~~~~~~- 337 (858)
T COG1674 260 RLGVPIGLRGKKGELLNLDLHEKAEGGPHGLVAGTTGSGKSELL-TYILSLAINHSPEELNFLLIDYKGGSMANPFKGL- 337 (858)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC-
T ss_conf 12455455567316666666643114421012467655732100-0102333358814420000120012321222221-
Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHH
Q ss_conf 20000444417876899999986676999999807786799999886420267766654323386799984456876753
Q gi|254780606|r 465 HLLTPVVTNPKKAVMALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMV 544 (744)
Q Consensus 465 h~~~~v~~~~~~~~~~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~ 544 (744)
|+.. .+++... .+++.....+|.+|.. .++..|.... ..+....+||.+.++.||++.+...
T Consensus 338 ~~~~-~~~~~~~-~r~~~~~~~~~~~r~~-------~~~~~~~~~~---------~~~~~~~~lP~l~ll~~~~~~~~~~ 399 (858)
T COG1674 338 HVVA-VITNLAE-ERALAAIKGELARRQR-------NHINAYTKSY---------KRGKDTPPLPHLFLIADEFAELKSE 399 (858)
T ss_pred CCCC-CCCCCCC-CCCCCCCCHHHHHHHC-------CCCCCCCHHH---------CCCCCCCCCCCHHHCCCCCCCCCCC
T ss_conf 1000-1014541-0000013103443100-------2323420110---------2568878898221205543223457
Q ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCCCCEEEEC-
Q ss_conf 1035899999999964201358999851654444146788505630572036811100326763168856898468646-
Q gi|254780606|r 545 AGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDMLYMS- 623 (744)
Q Consensus 545 ~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~gd~l~~~- 623 (744)
. .+.+..++..++++|++++|+|+|+|.+.... ..|.-.+|++++..+.+|+++|+..-|-+|--.+--...+
T Consensus 400 ~-~~~~~l~~~~~~l~~sl~~f~i~a~~~~~~~g-----p~vt~yei~l~~gvk~~~i~~L~~d~A~~L~~~~~ri~~~i 473 (858)
T COG1674 400 H-PDFAELLVSIARLGRSLGIHLILATQKPDGVG-----PSNTRFEIALKVGVKVDSIEILGNDDAAALVAKSRRYLAPI 473 (858)
T ss_pred C-CCHHHHHHHHHHHHHHHHHHEEEEEEEECCCC-----CCCEEEEEEECCCCHHHHHHHCCCHHHHHCCCCCEEEEEEE
T ss_conf 7-47788999999998878864435789605678-----85126998645662166776047377885014460589874
Q ss_pred CCCCEEEEEECCCC
Q ss_conf 89843899934389
Q gi|254780606|r 624 GGGRIQRVHGPLVS 637 (744)
Q Consensus 624 ~~~~~~r~~~~~~~ 637 (744)
+|-..+.+|-++..
T Consensus 474 pgk~~igie~pn~~ 487 (858)
T COG1674 474 PGKSYIGFQSPNSG 487 (858)
T ss_pred CCCCEEEEECCCCC
T ss_conf 79753789746889
No 7
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=99.33 E-value=5.2e-08 Score=73.94 Aligned_cols=289 Identities=17% Similarity=0.231 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC---E--E-------EEECCCC
Q ss_conf 89999998740355138986764892589997548886399998599999987147763---2--7-------7518983
Q gi|254780606|r 293 NAGSLETILEEFGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVIGLADDIARSMSSLSA---R--V-------AVIPKRN 360 (744)
Q Consensus 293 ~~~~l~~~l~~~~~~~~~~~~~~gp~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~~~~---~--~-------~~~pg~~ 360 (744)
++.-+...|.+-+-+....+.+. .+|+.|.= ....+..-...+...|...+. | + +-+||-.
T Consensus 311 ~a~dad~AL~eL~sg~~~~G~~~-~Tv~v~~~------~~~~l~~~~~~v~~~l~~~Gf~~~~Etlna~~A~~aqLPGn~ 383 (815)
T PRK13873 311 KAADADAALQELGADQVGFAYVT-ATVTVWDA------DPRVADEKLRLVEKVIQGRDFTCMPETLNAVEAWLGSLPGHV 383 (815)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEE-EEEEEECC------CHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCC
T ss_conf 99989999999857981258756-89999789------999999999999999985895799813121999986099986
Q ss_pred EEEEECCCCCCCEEEHHHHHC---CHHH------CCCCCCEEEEEEECCCCCEEECCHH--HCCCEEEEECCCCCHHHHH
Q ss_conf 454426888887076587512---8121------1467836898420578873211201--1484699707875344799
Q gi|254780606|r 361 AIGIELPNETRETVYLRQIIE---SRSF------SHSKANLALCLGKTISGESVIADLA--NMPHILVAGTTGSGKSVAI 429 (744)
Q Consensus 361 ~~~~~~p~~~~~~v~~~~~~~---~~~~------~~~~~~l~~~~g~~~~g~~~~~dl~--~~PH~lvaG~TgsGKS~~l 429 (744)
+- |.++..|.-+.+-. ...| .+.-..-++.+.++..|.|+.++|- ...|.||.|.||+||||+|
T Consensus 384 ~~-----n~R~~~iss~N~a~l~pl~~~~~G~~~n~~~~~p~l~~~~T~g~tPf~fN~H~gdvGHtlI~GpTGsGKTvll 458 (815)
T PRK13873 384 YA-----NVRQPPVSTLNLAHMMPLSAVWAGPERNEHLDGPPLLYGRTEGSTPFRLSLHVGDVGHTLVVGPTGAGKSVLL 458 (815)
T ss_pred CC-----CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCEEEECCCCCCHHHHH
T ss_conf 56-----6645644357777645424677899889999988058863489996687664688764389788999899999
Q ss_pred HHHHHHHHHHCCHHHEEEEEECCCCC-EE------CCCCCC----------CCEEEEE--EECHHHHHHHHHHHHHHHHH
Q ss_conf 99999999856801107999723421-00------012577----------5200004--44417876899999986676
Q gi|254780606|r 430 NTMIMSLLYRLRPDECRMIMVDPKML-EL------SVYDGI----------PHLLTPV--VTNPKKAVMALKWAVREMEE 490 (744)
Q Consensus 430 ~~~i~sl~~~~~p~~~~~~liD~k~~-~~------~~~~~~----------ph~~~~v--~~~~~~~~~~l~~~~~em~~ 490 (744)
+.|++. +.+|..- +++.+|..++ +. ..|..+ |--+.|. +.++.+-.-+..|+..-+.+
T Consensus 459 ~~l~~q-~~ry~~~--~vf~FDkd~s~~i~~~a~GG~y~~lg~~~~~~~~~~~~f~Pl~~~d~~~~r~~~~~wi~~ll~~ 535 (815)
T PRK13873 459 ALMALQ-FRRYPGS--QVFAFDFGGSIRAAALAMGGDWHDLGGGLSDGADGSVALQPLARIDDPAERAWAAEWIAAILAR 535 (815)
T ss_pred HHHHHH-HHHCCCC--CEEEEECCCCHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999-8644898--4899978987899999829987603565556789987779876889978889999999999961
Q ss_pred ---------HHHH------HHH--CCCCCHHHHHHHH---------HHHHCCCCCC-----CCCC---------------
Q ss_conf ---------9999------998--0778679999988---------6420267766-----6543---------------
Q gi|254780606|r 491 ---------RYRK------MSH--LSVRNIKSYNERI---------STMYGEKPQG-----CGDD--------------- 524 (744)
Q Consensus 491 ---------r~~~------~~~--~~~~~i~~~n~~~---------~~~~~~~~~~-----~~~~--------------- 524 (744)
+..+ ++. ...|.+..+...+ .........+ ..+.
T Consensus 536 ~g~~~tp~~~~~i~~Av~~l~~~~~~~Rtls~l~~~l~~~~L~~~L~~w~~~G~~G~lfD~~~D~l~~~~~~~Fe~~~l~ 615 (815)
T PRK13873 536 EGVAVTPEVKEHIWSALTSLASAPVEERTLTGLSVLLQSNALKQALRPYCLGGPYGRLLDAEHERLGSADVQAFETEGLM 615 (815)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHCCCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCEEEECCCCC
T ss_conf 79888989999999999998519852173999998818814999999983789845426886567776773699873037
Q ss_pred -------------------CCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCC----HH
Q ss_conf -------------------2338679998445687675310358999999999642013589998516544441----46
Q gi|254780606|r 525 -------------------MRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVI----TG 581 (744)
Q Consensus 525 -------------------~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi----~~ 581 (744)
+..-| .+|+|||+-.+ +.. ..+...|...-.-.|.....+|+|||.|+ |++ ..
T Consensus 616 ~~~~~~pvl~YLf~rie~~lDGrp-tli~iDEaW~~-L~~-~~F~~~i~~wLkT~RK~N~~vv~aTQS~~-di~~S~I~~ 691 (815)
T PRK13873 616 GTAAAPAVLSYLFHRIEDRFDGRP-TLLILDEGWLA-LDD-PVFAAQLREWLKTLRKKNASVIFATQSLA-DIDDSAIAP 691 (815)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCC-EEEEHHHHHHH-HCC-HHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHCCCHHH
T ss_conf 865178999999999999758996-69975865877-289-89999999999999870877999778889-986496689
Q ss_pred HHHHCCCCEEEEECCCHHH
Q ss_conf 7885056305720368111
Q gi|254780606|r 582 TIKANFPIRISFQVTSKID 600 (744)
Q Consensus 582 ~ik~n~~~ri~~~v~~~~d 600 (744)
.|..|+++||-|--..+..
T Consensus 692 aiie~c~T~IfLPNp~A~~ 710 (815)
T PRK13873 692 AIIESCPTRIFLPNERAIE 710 (815)
T ss_pred HHHHHCCEEEECCCCCCCC
T ss_conf 9998688569877822277
No 8
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.26 E-value=5.1e-08 Score=74.00 Aligned_cols=338 Identities=17% Similarity=0.231 Sum_probs=170.6
Q ss_pred HHHHHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE------------EECCCCE
Q ss_conf 9999998740355138986764892589997548886399998599999987147763277------------5189834
Q gi|254780606|r 294 AGSLETILEEFGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVIGLADDIARSMSSLSARVA------------VIPKRNA 361 (744)
Q Consensus 294 ~~~l~~~l~~~~~~~~~~~~~~gp~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~------------~~pg~~~ 361 (744)
+.-++..|.+-+=.....| ..-.+|+.| |-....+......+...+...+..+. -+||--.
T Consensus 324 ~~e~~~Al~~l~sg~~~~G-~~~~tv~v~------~~~~~~l~~~~~~v~~~l~~~Gf~~~~E~~n~~~Af~aqLPGn~~ 396 (818)
T PRK13830 324 VAETEDAIAQASSQLVAYG-YYTPVIVLF------DEDRERLQEKAEAIRRLIQAEGFGARIETLNATDAFLGSLPGNWY 396 (818)
T ss_pred HHHHHHHHHHHHCCCEEEE-EEEEEEEEE------CCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCCC
T ss_conf 9989999988517977668-888899996------799999999999999999738946898020219999985988765
Q ss_pred EEEECCCCCCCEEEHHHHHCCHHHCC---C----CC----CEEEEEEECCCC-CEEECCHH--HCCCEEEEECCCCCHHH
Q ss_conf 54426888887076587512812114---6----78----368984205788-73211201--14846997078753447
Q gi|254780606|r 362 IGIELPNETRETVYLRQIIESRSFSH---S----KA----NLALCLGKTISG-ESVIADLA--NMPHILVAGTTGSGKSV 427 (744)
Q Consensus 362 ~~~~~p~~~~~~v~~~~~~~~~~~~~---~----~~----~l~~~~g~~~~g-~~~~~dl~--~~PH~lvaG~TgsGKS~ 427 (744)
-|.++..|.-+.+...-.|.+ . ++ .-..+|-+...| .|+.+++- ...|.||.|.|||||||
T Consensus 397 -----~~~R~~~isS~NfA~l~plh~~~~G~~~~~~~~~~~~~p~l~~t~sG~TPf~fN~H~~dvGHtlIiGpTGsGKTv 471 (818)
T PRK13830 397 -----CNIREPLINTRNLADLIPLNSVWSGNPVAPCPFYPPNSPPLMQVASGSTPFRLNLHVDDVGHTLIFGPTGSGKST 471 (818)
T ss_pred -----CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCEEEEECCCCCCHHH
T ss_conf -----665655534677865541326678988898877788886148614899753562788986505898999998899
Q ss_pred HHHHHHHHHHHHCCHHHEEEEEECCCCC-EEC------CCCCC---------CCEEEEE--EECHHHHHHHHHHHHHH--
Q ss_conf 9999999999856801107999723421-000------12577---------5200004--44417876899999986--
Q gi|254780606|r 428 AINTMIMSLLYRLRPDECRMIMVDPKML-ELS------VYDGI---------PHLLTPV--VTNPKKAVMALKWAVRE-- 487 (744)
Q Consensus 428 ~l~~~i~sl~~~~~p~~~~~~liD~k~~-~~~------~~~~~---------ph~~~~v--~~~~~~~~~~l~~~~~e-- 487 (744)
+++.|+.. +.++.. .+++.+|-.++ +.. .|..+ |--+.|. +.+.....-+..|+..-
T Consensus 472 ll~fl~aq-~~ky~~--~~vf~FDKd~s~~i~~~a~GG~y~~l~~~~~~~~~~~~f~Pl~~~~t~~~~~fl~~wl~~l~~ 548 (818)
T PRK13830 472 LLALIAAQ-FRRYAG--AQIFAFDKGRSMLPLTLAAGGDHYEIGGDDAEEGRALAFCPLSELSTDADRAWAAEWIETLVA 548 (818)
T ss_pred HHHHHHHH-HHHCCC--CEEEEECCCCCHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999-864279--838997488768999998099258733677778887787988889985777999999999998
Q ss_pred -------------HHHHHHHHHHCCCCCHHHHHHH---------HHHHHCCCCC----CCCCC-----------------
Q ss_conf -------------6769999998077867999998---------8642026776----66543-----------------
Q gi|254780606|r 488 -------------MEERYRKMSHLSVRNIKSYNER---------ISTMYGEKPQ----GCGDD----------------- 524 (744)
Q Consensus 488 -------------m~~r~~~~~~~~~~~i~~~n~~---------~~~~~~~~~~----~~~~~----------------- 524 (744)
+.+-...+.....|.+..+-.. .......... +...|
T Consensus 549 ~~g~~~tp~~~~~i~~a~~~~~~~~~r~l~~~~~~~~~~~l~~~L~~w~~~G~~g~~fD~~~D~l~~~~~~~fe~~~ll~ 628 (818)
T PRK13830 549 LQGVTITPDHRNAISRQIGLMASARGRSLSDFVSGVQMREIKDALHHYTVDGPMGQLLDAEEDGLTLGAFQTFEIEQLMN 628 (818)
T ss_pred HCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 47987899999999999985103655809888643575789999998706997250447876675756641785530044
Q ss_pred --------------------CCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCC----H
Q ss_conf --------------------2338679998445687675310358999999999642013589998516544441----4
Q gi|254780606|r 525 --------------------MRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVI----T 580 (744)
Q Consensus 525 --------------------~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi----~ 580 (744)
+..-| .+|++||+-.++ .. ..+.+.|...-.-.|.....+|+|||.|+ |++ .
T Consensus 629 ~~~~~~~Pvl~Ylf~rie~~lDGrp-~li~lDE~W~~L-~~-~~F~~~i~~wlkt~RK~N~~vv~aTQS~~-d~~~S~I~ 704 (818)
T PRK13830 629 MGERNLVPVLTYLFRRIEKRLTGAP-SLIILDEAWLML-GH-PVFRDKIREWLKVLRKANCAVVLATQSIS-DAERSGII 704 (818)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCC-EEEEHHHHHHHH-CC-HHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHCCCHH
T ss_conf 7742079999999999997507991-799767648761-89-89999999999999863977999778889-98659648
Q ss_pred HHHHHCCCCEEEEECCCHHH--CCHH---CCCCCHH-----HHCCCCCEEEECC-CCCEEEEE-----ECCC--CHH-HH
Q ss_conf 67885056305720368111--0032---6763168-----8568984686468-98438999-----3438--988-99
Q gi|254780606|r 581 GTIKANFPIRISFQVTSKID--SRTI---LGEHGAE-----QLLGRGDMLYMSG-GGRIQRVH-----GPLV--SDI-EI 641 (744)
Q Consensus 581 ~~ik~n~~~ri~~~v~~~~d--sr~i---l~~~gae-----~l~g~gd~l~~~~-~~~~~r~~-----~~~~--~~~-~~ 641 (744)
..|..|++++|-|--..+.. ++.. +|=...| .+.-+-|++|..+ |+.+..+. =+|+ |.. ++
T Consensus 705 ~~iveq~~T~IfLPNp~A~~~~~~~~y~~fGL~~~eieiI~~~~pkR~y~~~~~~gsrl~~L~L~~~~la~~~~Sg~~~~ 784 (818)
T PRK13830 705 DVLKESCPTKICLPNGAAREPGTREFYERIGFNERQIEIVATAIPKREYYVASPEGRRLFDMSLGPVALSFVGASGKEDL 784 (818)
T ss_pred HHHHHHCCEEEECCCCHHCCCHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEECCCCCEEEECCCCCHHEEEEECCCHHHH
T ss_conf 99998688669866801055118889987599999999996258665189983899889974798401000114888899
Q ss_pred HHHHHHHHHC
Q ss_conf 9999999840
Q gi|254780606|r 642 EKVVQHLKKQ 651 (744)
Q Consensus 642 ~~~~~~~~~~ 651 (744)
+++- .+...
T Consensus 785 ~~~~-~l~~~ 793 (818)
T PRK13830 785 KRIR-ALKSE 793 (818)
T ss_pred HHHH-HHHHH
T ss_conf 9999-99998
No 9
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=99.24 E-value=8.8e-08 Score=72.38 Aligned_cols=293 Identities=18% Similarity=0.216 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCE--E----------EEECCC
Q ss_conf 8899999987403551389867648925899975488863999985999999871477632--7----------751898
Q gi|254780606|r 292 KNAGSLETILEEFGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVIGLADDIARSMSSLSAR--V----------AVIPKR 359 (744)
Q Consensus 292 ~~~~~l~~~l~~~~~~~~~~~~~~gp~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~~~~~--~----------~~~pg~ 359 (744)
..+.-++..|.+-+=+.-..+ ....+|+.|- -....+......+...+...+.- + +-+||-
T Consensus 353 ~~~~d~d~Al~el~sg~v~~G-y~t~tv~v~~------~~~~~l~~~~~~v~~~l~~~GF~~~~Et~n~~~A~lgsLPGn 425 (852)
T PRK13891 353 SMVGDAEAAIAEVNSGLVAAG-YYTSVVVLMD------EDRERLEASALLVEKAINRLAFAARIETINTMDAYLGSLPGH 425 (852)
T ss_pred HHHHHHHHHHHHHCCCCEEEE-EEEEEEEEEC------CCHHHHHHHHHHHHHHHHHCCCEEEEEHHCCHHHHHHCCCCC
T ss_conf 999999999998608975268-8888999978------999999999999999998689679861102399998619997
Q ss_pred CEEEEECCCCCCCEEEHHHHHCCHHHCCC----------CCCEEEEEEECCCCCEEECCHH--HCCCEEEEECCCCCHHH
Q ss_conf 34544268888870765875128121146----------7836898420578873211201--14846997078753447
Q gi|254780606|r 360 NAIGIELPNETRETVYLRQIIESRSFSHS----------KANLALCLGKTISGESVIADLA--NMPHILVAGTTGSGKSV 427 (744)
Q Consensus 360 ~~~~~~~p~~~~~~v~~~~~~~~~~~~~~----------~~~l~~~~g~~~~g~~~~~dl~--~~PH~lvaG~TgsGKS~ 427 (744)
.+--+..|-- .+..|-+++-...|... ...=++.+.++.+|.|+.++|- ...|.||.|.||+||||
T Consensus 426 ~~~nvR~~~i--sT~NlA~l~pl~~vw~G~~~~p~~~~~~~~pal~~~~T~g~tPf~fN~Hv~DvGHTlIiGpTGaGKTv 503 (852)
T PRK13891 426 GVENVRRPLI--NTMNLADLLPTSSIWTGSATAPCPMYPPLSPALMHCVTVGATPFRLNLHVRDLGHTFMFGPTGAGKST 503 (852)
T ss_pred CCCCCCCCCC--CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCEEEECCCCCCHHH
T ss_conf 6677563666--64777756410345678667988668999874188744899844785456886640787899998899
Q ss_pred HHHHHHHHHHHHCCHHHEEEEEECCCCC-----------------EECCC-C-CCCCEEEEE--EECHHHHHHHHHHHHH
Q ss_conf 9999999999856801107999723421-----------------00012-5-775200004--4441787689999998
Q gi|254780606|r 428 AINTMIMSLLYRLRPDECRMIMVDPKML-----------------ELSVY-D-GIPHLLTPV--VTNPKKAVMALKWAVR 486 (744)
Q Consensus 428 ~l~~~i~sl~~~~~p~~~~~~liD~k~~-----------------~~~~~-~-~~ph~~~~v--~~~~~~~~~~l~~~~~ 486 (744)
+|+.|++.+ .+|.+- +++.+|..+. .+... . +-+--+.|. +.+.....-+..|+..
T Consensus 504 ll~fL~aQ~-~rY~~~--~vf~FDK~~S~~~~~~g~~~~~~a~GG~~~~l~~~~~~~gfnPL~~~dt~~~r~~~~~wl~~ 580 (852)
T PRK13891 504 HLGIIAAQL-RRYAGM--SIYAFDKGMSMYPLAAGIRAATKGKSGLHFTVAADDDRLAFCPLQFLETKGDRAWAMEWIDT 580 (852)
T ss_pred HHHHHHHHH-HHCCCC--CEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 999999997-441898--18987898523434412468898539817630689998786878689971457999999999
Q ss_pred HH---------------HHHHHHHHHCCCCCHHHHHHHH---------HHHHCCCCC-----CC----------------
Q ss_conf 66---------------7699999980778679999988---------642026776-----66----------------
Q gi|254780606|r 487 EM---------------EERYRKMSHLSVRNIKSYNERI---------STMYGEKPQ-----GC---------------- 521 (744)
Q Consensus 487 em---------------~~r~~~~~~~~~~~i~~~n~~~---------~~~~~~~~~-----~~---------------- 521 (744)
-. .+-..-++..+.|.+..+...+ ......... ..
T Consensus 581 ll~~~g~~~tp~~~~~I~~Av~sl~~~~~rtLs~f~~~lq~~~l~~aL~~w~~~G~~G~lfDn~~D~l~~s~~~~Fe~~~ 660 (852)
T PRK13891 581 ILALNGVNTTPAQRNEIGNAIMSMHASGARTLSEFSVTIQDEAIREAIKQYTVDGSMGHLLDAEEDGLSLSDFTVFEIEE 660 (852)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCEEEECHH
T ss_conf 99728988998999999999998761646079999876398889999999846998060378876676767645882501
Q ss_pred ----CCC----------------CCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCC--
Q ss_conf ----543----------------2338679998445687675310358999999999642013589998516544441--
Q gi|254780606|r 522 ----GDD----------------MRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVI-- 579 (744)
Q Consensus 522 ----~~~----------------~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi-- 579 (744)
++. +..-| .+|++||+-.++ .. ..+...|...-.--|..-..+|+|||.|+ |++
T Consensus 661 l~~~~~~~~~Pvl~YLFhRIe~~lDGrp-tli~lDEaW~~L-~d-p~F~~~i~~wLKTlRKkN~~VvfATQSl~-Di~~S 736 (852)
T PRK13891 661 LMNLGEKFALPVLLYLFRRIERALKGQP-SVIILDEAWLML-GH-PAFRAKIREWLKVLRKANCLVLMATQSLS-DAANS 736 (852)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHCCCC-EEEEEHHHHHHH-CC-HHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHCC
T ss_conf 3026815589999999999998736992-699952367761-89-99999999999999871847999768888-98538
Q ss_pred --HHHHHHCCCCEEEEECCCHHH
Q ss_conf --467885056305720368111
Q gi|254780606|r 580 --TGTIKANFPIRISFQVTSKID 600 (744)
Q Consensus 580 --~~~ik~n~~~ri~~~v~~~~d 600 (744)
...|..++++||.|--..+..
T Consensus 737 ~I~~aiiEqc~T~IfLPNp~A~~ 759 (852)
T PRK13891 737 GILDVIVESTATKIFLPNVYARD 759 (852)
T ss_pred CHHHHHHHHCCEEEECCCCCCCC
T ss_conf 56899998588568767855577
No 10
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=99.15 E-value=3.9e-08 Score=74.79 Aligned_cols=266 Identities=18% Similarity=0.236 Sum_probs=141.7
Q ss_pred ECCCCEEEEECCCCCCCEEEHHHHHC---CHHHCC----CCCCEEEEEEECCCCCEEECCHH--HCCCEEEEECCCCCHH
Q ss_conf 18983454426888887076587512---812114----67836898420578873211201--1484699707875344
Q gi|254780606|r 356 IPKRNAIGIELPNETRETVYLRQIIE---SRSFSH----SKANLALCLGKTISGESVIADLA--NMPHILVAGTTGSGKS 426 (744)
Q Consensus 356 ~pg~~~~~~~~p~~~~~~v~~~~~~~---~~~~~~----~~~~l~~~~g~~~~g~~~~~dl~--~~PH~lvaG~TgsGKS 426 (744)
+||--. .|.++..|.-+.+-. ...|.. .++.=++.+-++..|.|+.+++- ...|.||.|.||||||
T Consensus 366 LPGn~~-----~~~R~~~iss~N~A~l~plh~~~~G~~~g~wg~al~~~~T~~gtPf~fn~H~~d~GHt~I~G~TGsGKT 440 (789)
T PRK13853 366 LPGNRK-----WRTRPGAITSRNFAGLVSFENFPEGARSGHWGNAIARFRTNGGTPFDYIPHEHDVGMTAIFGPIGRGKT 440 (789)
T ss_pred CCCCCC-----CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCEEEECCCCCCHH
T ss_conf 998621-----345766443989986651048878888889998753425499982586378788774488789999889
Q ss_pred HHHHHHHHHHHHHCCH-HHEEEEEECCCCCE-E------CCCC----CCCCEEEEE--EECHHHHHHH-HHHHHHHHH--
Q ss_conf 7999999999985680-11079997234210-0------0125----775200004--4441787689-999998667--
Q gi|254780606|r 427 VAINTMIMSLLYRLRP-DECRMIMVDPKMLE-L------SVYD----GIPHLLTPV--VTNPKKAVMA-LKWAVREME-- 489 (744)
Q Consensus 427 ~~l~~~i~sl~~~~~p-~~~~~~liD~k~~~-~------~~~~----~~ph~~~~v--~~~~~~~~~~-l~~~~~em~-- 489 (744)
++++.|+..+ .++.. ..-+++.+|-.++. . ..|. +.+--+.|. +.|....... ..|+..-++
T Consensus 441 tll~fL~aq~-~ky~~~~~~~~~~fDkd~s~~i~~~a~GG~y~~i~~g~~tg~nPl~~l~~t~~~~~fl~~wl~~l~~~~ 519 (789)
T PRK13853 441 TLMTFILAML-EQSMVDRAGAVVFFDKDRGGELLVRATGGTYLALRRGVPSGLAPLRGLENTAASRDFLREWIVALIESD 519 (789)
T ss_pred HHHHHHHHHH-HHHHCCCCCEEEEEECCCCHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999-974223577089995886389999982987761269995684876568998688999999999999725
Q ss_pred --------HHH-------HHHH-HCCCCCHHHHHH------------HHHHHHCCCC-----CCCCC-----------C-
Q ss_conf --------699-------9999-807786799999------------8864202677-----66654-----------3-
Q gi|254780606|r 490 --------ERY-------RKMS-HLSVRNIKSYNE------------RISTMYGEKP-----QGCGD-----------D- 524 (744)
Q Consensus 490 --------~r~-------~~~~-~~~~~~i~~~n~------------~~~~~~~~~~-----~~~~~-----------~- 524 (744)
++. .+|. ....|.+..... +......... ....+ +
T Consensus 520 g~~~lt~~~~~~i~~av~~~~~~~~~~r~ls~l~~~l~~~~~~~~~~rL~~w~~~g~~gwlfD~~~D~l~~~~~~~gfd~ 599 (789)
T PRK13853 520 GRGGISPEENRRLVRGIHRQLSFDPDMRSLAGLREFLLHGPAEGAGARLQRWCRGNALGWAFDGEVDEVKLDPSITGFDM 599 (789)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEEC
T ss_conf 99999999999999999998608831078989999845588216999999985499704403686546588787799861
Q ss_pred ------------------------CCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCC-
Q ss_conf ------------------------2338679998445687675310358999999999642013589998516544441-
Q gi|254780606|r 525 ------------------------MRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVI- 579 (744)
Q Consensus 525 ------------------------~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi- 579 (744)
+..-| .++++||+-.++. ...+...|...-.-.|..+..+|+|||.|+ |++
T Consensus 600 ~~ll~~~~~~~pvl~YLf~rie~~ldGrp-~ii~lDE~w~~l~--~~~f~~~i~~wlkt~RK~N~~vv~aTQs~~-d~~~ 675 (789)
T PRK13853 600 THLLEYEEVCAPAAAYLLHRIGAMVDGRR-FVMSCDEFRAYLL--NPKFAAVVDKFLLTVRKNNGMLILATQQPE-HVLE 675 (789)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHCCCC-EEEEEHHHHHHHC--CHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHC
T ss_conf 78527851289999999999998606996-6999456667646--999999999999999874908999648999-9863
Q ss_pred ---HHHHHHCCCCEEEEECCCHH--HCCHHCCCCCHHH-H------CCCCCEEEECCC-CCEEEE
Q ss_conf ---46788505630572036811--1003267631688-5------689846864689-843899
Q gi|254780606|r 580 ---TGTIKANFPIRISFQVTSKI--DSRTILGEHGAEQ-L------LGRGDMLYMSGG-GRIQRV 631 (744)
Q Consensus 580 ---~~~ik~n~~~ri~~~v~~~~--dsr~il~~~gae~-l------~g~gd~l~~~~~-~~~~r~ 631 (744)
...|..|++++|-|-=..+. +.+--||-...|- + ..+.+||++.+. +.+.++
T Consensus 676 s~i~~~i~e~~~T~I~LPNp~A~~~~y~~~~gLt~~e~~~I~~~~~~~sR~flikq~~~s~~~~l 740 (789)
T PRK13853 676 SPLGASLVAQCMTKIFYPSPTADRSAYIDGLKCTEKEFQAIREDMAVGSRKFLLKRESGSVICEF 740 (789)
T ss_pred CCHHHHHHHHCCEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCEEEEEE
T ss_conf 82789999868867988896647788875339999999999863697562699981895089994
No 11
>pfam05872 DUF853 Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. One member from Brucella melitensis is thought to be an ATPase.
Probab=99.07 E-value=1.6e-08 Score=77.44 Aligned_cols=119 Identities=24% Similarity=0.366 Sum_probs=88.9
Q ss_pred CCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEE--EEECCCHHHCCHH
Q ss_conf 38679998445687675310358999999999642013589998516544441467885056305--7203681110032
Q gi|254780606|r 527 PMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRI--SFQVTSKIDSRTI 604 (744)
Q Consensus 527 ~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri--~~~v~~~~dsr~i 604 (744)
..|.+|.++||-.-|+..+++...+.|..+.++=|+-|+-+.++||.|. | |+..+-+++..|| |||--+.-|-+.|
T Consensus 255 dKPKLVFFFDEAHLLF~dApkall~kIEqvVRLIRSKGVGVyFvTQnP~-D-iPd~VL~QLGnRVQHALRAfTP~DqKAv 332 (504)
T pfam05872 255 DKPKLVFFFDEAHLLFNDAPKVLLEKVEQVVRLIRSKGVGVYFVTQNPL-D-LPDTVLAQLGNRVQHALRAFTPRDQKAV 332 (504)
T ss_pred CCCEEEEEECHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC-C-CCHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 8853899940166652478599999999999875306735999727876-4-7088999887788999863885469999
Q ss_pred ------------CCCCCHHHHCCCCCEEE--ECCCCCEEEEEECC----------CCHHHHHHHHHH
Q ss_conf ------------67631688568984686--46898438999343----------898899999999
Q gi|254780606|r 605 ------------LGEHGAEQLLGRGDMLY--MSGGGRIQRVHGPL----------VSDIEIEKVVQH 647 (744)
Q Consensus 605 ------------l~~~gae~l~g~gd~l~--~~~~~~~~r~~~~~----------~~~~~~~~~~~~ 647 (744)
+|...+=.=||-|.-|. +...|.|.-++-.+ ++++|...++..
T Consensus 333 k~aa~tfr~np~~d~~~~it~LgvGEAlVS~LdekG~Pt~v~rt~i~pP~S~mGp~t~~er~~~i~~ 399 (504)
T pfam05872 333 KAAADTFRPNPDFDTEEAITELGTGEALVSTLDEKGAPSIVERTLVRPPASRIGPLTDEERAALVQA 399 (504)
T ss_pred HHHHHHCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEEECCHHHCCCCCHHHHHHHHHC
T ss_conf 9999857999766899998762765024331057999651467888786330588999999999974
No 12
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=99.06 E-value=3.9e-08 Score=74.80 Aligned_cols=212 Identities=22% Similarity=0.355 Sum_probs=113.8
Q ss_pred EEEEEEECCCCCEEECCHH--HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCC-EEC------CCC-
Q ss_conf 6898420578873211201--148469970787534479999999999856801107999723421-000------125-
Q gi|254780606|r 392 LALCLGKTISGESVIADLA--NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKML-ELS------VYD- 461 (744)
Q Consensus 392 l~~~~g~~~~g~~~~~dl~--~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~-~~~------~~~- 461 (744)
=++.+=++..|.|+++++- ...|.||.|.||||||++++.|+.. +.++.| +++.+|-.++ +.. .|.
T Consensus 424 ~av~~~~T~~gtpy~fNfH~~d~GHtlI~G~TGsGKTtl~~fL~aq-~~ky~~---~~f~fDkd~~~~i~~~a~GG~Y~~ 499 (800)
T PRK13898 424 EAVTVFDTTSGTPFYFNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQ-AMKFSP---RMFFFDKDRGAEIFIRALNGVYTV 499 (800)
T ss_pred CCCEECCCCCCCCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHH-HHHHCC---EEEEEECCCCHHHHHHHHCCEEEE
T ss_conf 5665030389987798674598775699899999899999999999-875488---799997999869999982988874
Q ss_pred ---CCCCEEEEE--EECHHHHHHHHHHH---HH--------H--------------H---HHHHHHHHH-CCCCCHHHHH
Q ss_conf ---775200004--44417876899999---98--------6--------------6---769999998-0778679999
Q gi|254780606|r 462 ---GIPHLLTPV--VTNPKKAVMALKWA---VR--------E--------------M---EERYRKMSH-LSVRNIKSYN 507 (744)
Q Consensus 462 ---~~ph~~~~v--~~~~~~~~~~l~~~---~~--------e--------------m---~~r~~~~~~-~~~~~i~~~n 507 (744)
+-+--+.|. ..+.....-+..|+ +. + | .||...+.. .+...-.+..
T Consensus 500 l~~g~~tg~nP~~l~dt~~n~~fl~~~l~~l~~~~g~~~t~~~~~~I~~av~~~~~l~~~~r~ls~l~~~l~~~~~~~L~ 579 (800)
T PRK13898 500 IEPRLKCNFNPLQLDDTPENRTFLMEWLKVLVTSNGESLTAQDIKRINDAVEGNFKLKKEDRRLSNLVAFLGIDGPNTLA 579 (800)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHH
T ss_conf 37998568687779998678899999999999737999999999999999999860892113265799873548846899
Q ss_pred HHHHHHHCCCCC----C-C------------CCC-------------------------CCCCCEEEEEHHHHHHHHHHC
Q ss_conf 988642026776----6-6------------543-------------------------233867999844568767531
Q gi|254780606|r 508 ERISTMYGEKPQ----G-C------------GDD-------------------------MRPMPYIVIIVDEMADLMMVA 545 (744)
Q Consensus 508 ~~~~~~~~~~~~----~-~------------~~~-------------------------~~~~p~ivvviDE~a~l~~~~ 545 (744)
.+.......... + . +.+ +..-| .++||||+-.++.
T Consensus 580 ~rL~~w~~~G~~g~~fDn~~D~l~~~~~~~~gfd~t~ll~~~~~~~pvl~Ylf~rie~~ldG~p-~ii~iDE~W~~l~-- 656 (800)
T PRK13898 580 GRIAMWHGKGSHAAIFDNEEDLLDFQKARVFGFEMTELLKDPVSLAPVLLYLFHRISISLDGTP-SMIVLDEAWALID-- 656 (800)
T ss_pred HHHHHHHCCCCEEECCCCCCCCCCCCCCCEEEEECHHHCCCCHHHHHHHHHHHHHHHHHCCCCC-EEEEEECHHHHHC--
T ss_conf 9999986699805224897556686668089998467528820489999999999997528982-6999603366637--
Q ss_pred CHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCC----HHHHHHCCCCEEEEECCCHHH-CCHHCCCCCHH
Q ss_conf 0358999999999642013589998516544441----467885056305720368111-00326763168
Q gi|254780606|r 546 GKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVI----TGTIKANFPIRISFQVTSKID-SRTILGEHGAE 611 (744)
Q Consensus 546 ~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi----~~~ik~n~~~ri~~~v~~~~d-sr~il~~~gae 611 (744)
...+...|...-...|..+-.+|+|||.|+ |++ ...|..|++++|-|-=..+.+ .+-.+|-...|
T Consensus 657 ~~~f~~~i~~~lkt~RK~N~~vv~aTQs~~-d~~~s~i~~~iieq~~T~I~LPN~~A~~~y~~~f~Lt~~E 726 (800)
T PRK13898 657 NPVFAPKIKDWLKVLRKLNTFVIFATQSVE-DASKSAISDTLVQQTATQIFLPNLKATDIYRSVFMLSERE 726 (800)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHCCCHHHHHHHHCCEEEECCCCCCHHHHHHHCCCCHHH
T ss_conf 999999999999999873977999808899-9862846899998688579887811009999865999999
No 13
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=98.94 E-value=9.4e-09 Score=79.04 Aligned_cols=104 Identities=20% Similarity=0.251 Sum_probs=62.3
Q ss_pred CEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCC--CC----CHHHHHHCCCCEEEEECCCHHHCC
Q ss_conf 679998445687675310358999999999642013589998516544--44----146788505630572036811100
Q gi|254780606|r 529 PYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSV--DV----ITGTIKANFPIRISFQVTSKIDSR 602 (744)
Q Consensus 529 p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~--~v----i~~~ik~n~~~ri~~~v~~~~dsr 602 (744)
.++++++|||+.|-. + ..|.+....+|+.|++++++.|-.+- ++ ....|.+|+.++|.|++.+....+
T Consensus 270 ~rv~~~lDE~~~l~~-----l-~~~~~~l~~~R~~g~~~~~~~Q~~~Ql~~~YG~~~a~~i~~~~~~~i~~~~~d~~ta~ 343 (410)
T cd01127 270 RRLWFFIDELPSLHK-----L-PDLVDALAEGRKFGGCFVLGIQSYAQLEDIYGKKGAQTLASNLRTRIVLAAPDAKTAE 343 (410)
T ss_pred CCEEEEEECHHCCCC-----C-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCHHHHHHHHHCCCCEEEEECCCHHHHH
T ss_conf 607999887000377-----1-7799999988517978999917889999997873899998427768998279988999
Q ss_pred HHCCCCCHHHHCCCCCEEEE------------CCCC-CEEEEEECCCCHHHHHHH
Q ss_conf 32676316885689846864------------6898-438999343898899999
Q gi|254780606|r 603 TILGEHGAEQLLGRGDMLYM------------SGGG-RIQRVHGPLVSDIEIEKV 644 (744)
Q Consensus 603 ~il~~~gae~l~g~gd~l~~------------~~~~-~~~r~~~~~~~~~~~~~~ 644 (744)
.+= .+||.-..... .+.+ .-.+..-+.|..+||.++
T Consensus 344 ~~S------~~lG~~~v~~~~~s~s~g~~~~~~~~s~~~~~~~r~lv~p~Ei~~L 392 (410)
T cd01127 344 HAS------DSLGEQEVREMRENYSYGANNIRDGVSLGPQTEVQPLVTPSEIQAL 392 (410)
T ss_pred HHH------HHCCCEEEEEEEEEECCCCCCCCCCCEECCEEEEECCCCHHHHHCC
T ss_conf 999------9609669988750044787888898554311021327699999639
No 14
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=98.88 E-value=4.3e-07 Score=67.65 Aligned_cols=219 Identities=18% Similarity=0.259 Sum_probs=121.8
Q ss_pred CCCCCCEEEEEEECCCCCEEECCHHH---CCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEEC----
Q ss_conf 14678368984205788732112011---48469970787534479999999999856801107999723421000----
Q gi|254780606|r 386 SHSKANLALCLGKTISGESVIADLAN---MPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELS---- 458 (744)
Q Consensus 386 ~~~~~~l~~~~g~~~~g~~~~~dl~~---~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~---- 458 (744)
....+.-++.++++.+|.|+++++-. ..|.+|.|+||+||||+|+-++.+...... .+++++|.-.+--.
T Consensus 407 ~~n~wg~~l~~~kt~~~sPf~~nfH~~~d~ghT~I~G~tGaGKTvLl~~lla~~~k~~~---~~iv~fDk~~g~~~~~~a 483 (796)
T COG3451 407 RGNPWGEPLTVLKTEDGSPFYFNFHVGEDVGHTLIIGPTGAGKTVLLSFLLAQALKYGN---PQIVAFDKDNGAYIFIEA 483 (796)
T ss_pred CCCCCCCCCEEEECCCCCCEEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC---CCEEEECCCCCHHHHHHH
T ss_conf 68889975054204899962564355667697499889888789999999999987459---818998489735778887
Q ss_pred ---CCC----CCCCEEEEE--EECHHH-HHHHHHHHHHHHHH----------H-----HHHHHHC--CCCCHHHHH----
Q ss_conf ---125----775200004--444178-76899999986676----------9-----9999980--778679999----
Q gi|254780606|r 459 ---VYD----GIPHLLTPV--VTNPKK-AVMALKWAVREMEE----------R-----YRKMSHL--SVRNIKSYN---- 507 (744)
Q Consensus 459 ---~~~----~~ph~~~~v--~~~~~~-~~~~l~~~~~em~~----------r-----~~~~~~~--~~~~i~~~n---- 507 (744)
.|. +.+-.+.|. +.|..+ ..-...|+...... | +.-+..+ .-|.+.+.-
T Consensus 484 ~gG~y~~l~~~~~~~~NPf~~l~~t~~n~~fl~~~~~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~~~~r~~~~l~~~l~ 563 (796)
T COG3451 484 LGGEYLDLEPGVPSGFNPFEILEDTDENREFLAEWLVKLLAHEGISLSPAEERAISAAINNLATAPKEDRTFSDLIELLG 563 (796)
T ss_pred HCCEEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHC
T ss_conf 49887535678774608411037865668999999999963267666567888999999875447522474889998852
Q ss_pred ---------HHHHHHHC---------CCCCCCC--------------------------------CCCCCCCEEEEEHHH
Q ss_conf ---------98864202---------6776665--------------------------------432338679998445
Q gi|254780606|r 508 ---------ERISTMYG---------EKPQGCG--------------------------------DDMRPMPYIVIIVDE 537 (744)
Q Consensus 508 ---------~~~~~~~~---------~~~~~~~--------------------------------~~~~~~p~ivvviDE 537 (744)
.+...... +...... ..+.-- .++++|||
T Consensus 564 ~~~~~~~l~srL~~~~~~g~~~~lfD~~~~~l~~~~~v~~fD~~~~l~~~~~~~~~~~YlFhri~~~~dgr-~~~i~iDE 642 (796)
T COG3451 564 IKERPNSLASRLAPWCEGGLFGWLFDNDDDSLKGDLSVIGFDMTELLDNPKVLAPVLLYLFHRIEERLDGR-PFLIFIDE 642 (796)
T ss_pred CCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHHHCCC-CEEEEEHH
T ss_conf 68684228898888860442566624854112466517985135414665568999999999988872489-55998104
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCC----CHHHHHHCCCCEEEEECCCHHH--CCHHCCCCCHH
Q ss_conf 68767531035899999999964201358999851654444----1467885056305720368111--00326763168
Q gi|254780606|r 538 MADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDV----ITGTIKANFPIRISFQVTSKID--SRTILGEHGAE 611 (744)
Q Consensus 538 ~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~v----i~~~ik~n~~~ri~~~v~~~~d--sr~il~~~gae 611 (744)
+-.+.. .+-+.+-|.+.-...|..-+-+|+|||-+. |+ |-..|..|.++||.+.-..+++ +.-+++-...|
T Consensus 643 ~w~~l~--~~~f~~~i~~~lkt~RK~Ng~vvfatQs~~-d~~~s~iA~~~ie~~~t~Iflpn~~~~~~~~~~~f~l~~~e 719 (796)
T COG3451 643 FWKLLD--NPKFADFIRDWLKTLRKLNGVVVFATQSIL-DILKSRIADAIIEQCPTKIFLPNPKAIEADYYRGFGLTERE 719 (796)
T ss_pred HHHHCC--CHHHHHHHHHHHHHHHHHCCEEEEECCCHH-HHHCCHHHHHHHHHCCEEEECCCCCCCCHHCCCCCCCCHHH
T ss_conf 678558--888999999999998860754998526688-77436368999961871897678655530001102786567
No 15
>pfam10412 TrwB_AAD_bind Type IV secretion-system coupling protein DNA-binding domain. The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.
Probab=98.77 E-value=2.4e-07 Score=69.41 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=44.2
Q ss_pred EEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCC--CC----CHHHHHHCCCCEEEEECCCHHHCCH
Q ss_conf 79998445687675310358999999999642013589998516544--44----1467885056305720368111003
Q gi|254780606|r 530 YIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSV--DV----ITGTIKANFPIRISFQVTSKIDSRT 603 (744)
Q Consensus 530 ~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~--~v----i~~~ik~n~~~ri~~~v~~~~dsr~ 603 (744)
++++++|||+-|-. +. .+..+...+|++||++++++|..+- ++ ..-.|.+|+.++|.|++.+....+-
T Consensus 244 ~v~~~lDEf~~lg~-----i~-~l~~~l~~~Rs~gi~~~l~~Qs~~QL~~~YG~~~a~~il~n~~~~i~~~~~d~eTA~~ 317 (386)
T pfam10412 244 RLWFFLDELPSLHK-----LP-SLADALAEGRKFGGCVVLGIQSFAQLEEVYGEDGAQTLLGLCNTKLILRVSDAETAEW 317 (386)
T ss_pred CEEEEEECHHHCCC-----CH-HHHHHHHHHHCCCCEEEEEEECHHHHHHHHCHHHHHHHHHHCCCEEEEECCCHHHHHH
T ss_conf 44999987110276-----68-8999999864078499999838999999879889999996256599982799899999
Q ss_pred H
Q ss_conf 2
Q gi|254780606|r 604 I 604 (744)
Q Consensus 604 i 604 (744)
|
T Consensus 318 i 318 (386)
T pfam10412 318 M 318 (386)
T ss_pred H
T ss_conf 9
No 16
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=98.40 E-value=4.5e-05 Score=53.76 Aligned_cols=124 Identities=17% Similarity=0.074 Sum_probs=70.7
Q ss_pred EEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCC----H---HHHHHCCCCEEEEECCCHHHCC
Q ss_conf 79998445687675310358999999999642013589998516544441----4---6788505630572036811100
Q gi|254780606|r 530 YIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVI----T---GTIKANFPIRISFQVTSKIDSR 602 (744)
Q Consensus 530 ~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi----~---~~ik~n~~~ri~~~v~~~~dsr 602 (744)
..+|||||.-.|+.-....+...|....+.+|..|=-+|++||--. |.. + .-+-+|...+|-|+=....=-.
T Consensus 685 ~k~~iiDEAW~lL~~~n~~~~~FIe~~yRr~RKy~Gs~i~iTQ~i~-D~~~~~~s~~a~Aa~~NS~~ki~L~Q~~~~~~~ 763 (864)
T PRK13721 685 KKLNVIDEGWRLLDFKNHKVGEFIEKGYRTARRHTGAYITITQNIV-DFDSDKASSAARAAWGNSSYKIILKQSAKEFAK 763 (864)
T ss_pred EEEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCHH-HHHCCCCCHHHHHHHHCCCEEEEECCCHHHHHH
T ss_conf 1799970187764589878999999999998861866999922667-753445789999999677648973489889999
Q ss_pred ------HHCCCCCHHHHC--------CCCCEEEECCCC-CEEEEEE------CCCCHHHHHHHHHHHHHCCCC
Q ss_conf ------326763168856--------898468646898-4389993------438988999999999840887
Q gi|254780606|r 603 ------TILGEHGAEQLL--------GRGDMLYMSGGG-RIQRVHG------PLVSDIEIEKVVQHLKKQGCP 654 (744)
Q Consensus 603 ------~il~~~gae~l~--------g~gd~l~~~~~~-~~~r~~~------~~~~~~~~~~~~~~~~~~~~~ 654 (744)
.-++.....-|. +...++...+++ ...|+=- -|-|+.+--.-++.+..||..
T Consensus 764 ~~~~~~~~~~~~~~~~i~s~~~~~~~~ySe~~i~~~~~~~~~Rl~~Dpfs~~l~St~~~d~~~ie~l~~~G~s 836 (864)
T PRK13721 764 YNQLYPDQFSPLERDMIGGFGAAKDQWFSSFLLQVENHSSWHRLFVDPLSRAMYSSDGPDFEFVQQKRKEGLS 836 (864)
T ss_pred HHHHCCCCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEECHHHHHHHCCCHHHHHHHHHHHHCCCC
T ss_conf 9864843348889999854646788861599996699627899863747888856987889999999986999
No 17
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.23 E-value=1.1e-05 Score=57.92 Aligned_cols=163 Identities=26% Similarity=0.387 Sum_probs=87.5
Q ss_pred EEEEECCCCCEEECCHH--HCCC--EEEEECCCCCHHHHHHHHHHHHHHHC-----CHHHEEEEE-------ECCCCCEE
Q ss_conf 98420578873211201--1484--69970787534479999999999856-----801107999-------72342100
Q gi|254780606|r 394 LCLGKTISGESVIADLA--NMPH--ILVAGTTGSGKSVAINTMIMSLLYRL-----RPDECRMIM-------VDPKMLEL 457 (744)
Q Consensus 394 ~~~g~~~~g~~~~~dl~--~~PH--~lvaG~TgsGKS~~l~~~i~sl~~~~-----~p~~~~~~l-------iD~k~~~~ 457 (744)
+.++.+..-..++-||. --|| ..|-|+.|||||++|+ ||++-.... .||.=++-+ .=|+..|+
T Consensus 387 FGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllR-mi~G~~~~~~ee~y~p~sg~v~~p~nt~~a~iPge~Ep 465 (593)
T COG2401 387 FGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLR-MILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEP 465 (593)
T ss_pred HCCHHEEEEEEEEECEEEEECCCCEEEEEECCCCCCCHHHH-HHHHHHHCCCCCCCCCCCCCEECCCCCHHHCCCCCCCC
T ss_conf 43012145566640203686478768999248877311999-99877643562024787772103443132106765554
Q ss_pred CCC--CCCCCEEEEEEECHHHHHHHHHHHHHHHHH-HH-HHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
Q ss_conf 012--577520000444417876899999986676-99-99998077867999998864202677666543233867999
Q gi|254780606|r 458 SVY--DGIPHLLTPVVTNPKKAVMALKWAVREMEE-RY-RKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVI 533 (744)
Q Consensus 458 ~~~--~~~ph~~~~v~~~~~~~~~~l~~~~~em~~-r~-~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivv 533 (744)
.+- .-+-|+. ....|...|...|..+- -|+. +| +.+.++ ..-.-+|.|++....+. | =+.
T Consensus 466 ~f~~~tilehl~-s~tGD~~~AveILnraG-lsDAvlyRr~f~EL--StGQKeR~KLAkllaer-----------p-n~~ 529 (593)
T COG2401 466 EFGEVTILEHLR-SKTGDLNAAVEILNRAG-LSDAVLYRRKFSEL--STGQKERAKLAKLLAER-----------P-NVL 529 (593)
T ss_pred CCCCHHHHHHHH-HCCCCHHHHHHHHHHHC-CCHHHHHHCCHHHC--CCCHHHHHHHHHHHHCC-----------C-CCE
T ss_conf 457311899875-23686367899997604-53054300467553--85457778999997348-----------9-817
Q ss_pred EHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 844568767531035899999999964201358999851654
Q gi|254780606|r 534 IVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 534 viDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
++|||+.+.... -.......|..++|.+||-||++|-||+
T Consensus 530 ~iDEF~AhLD~~--TA~rVArkiselARe~giTlivvThrpE 569 (593)
T COG2401 530 LIDEFAAHLDEL--TAVRVARKISELAREAGITLIVVTHRPE 569 (593)
T ss_pred EHHHHHHHCCHH--HHHHHHHHHHHHHHHHCCEEEEEECCHH
T ss_conf 735666431779--9999999999999970973999964877
No 18
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346 This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro . Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=98.02 E-value=1.4e-05 Score=57.19 Aligned_cols=214 Identities=22% Similarity=0.292 Sum_probs=126.9
Q ss_pred CCC-EEEEEEECCCCCEEECCHH--H------------CCCEEEEECCCCCHHHHHHHHHHHHHHHCCH-HHEEEEEECC
Q ss_conf 783-6898420578873211201--1------------4846997078753447999999999985680-1107999723
Q gi|254780606|r 389 KAN-LALCLGKTISGESVIADLA--N------------MPHILVAGTTGSGKSVAINTMIMSLLYRLRP-DECRMIMVDP 452 (744)
Q Consensus 389 ~~~-l~~~~g~~~~g~~~~~dl~--~------------~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p-~~~~~~liD~ 452 (744)
.+- -+|.+=++..|.|+++++= . .-|.+|.|.|||||||+|+-|++.+. ++.+ +-++++.+|=
T Consensus 478 ~WG~~al~~l~t~~gtPfyfNFH~~~~~~~~A~~~~r~~GhT~IfG~~G~GKTtLl~fL~a~~~-ky~~~~a~~~~~fDk 556 (931)
T TIGR00929 478 PWGDPALTLLKTQSGTPFYFNFHVRDAKEKNADEGKRVLGHTLIFGPTGSGKTTLLNFLLAQLQ-KYKPNFALTIFAFDK 556 (931)
T ss_pred CCCCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCHHHCCCEEEECCCCCCHHHHHHHHHHHHH-CCCCCCCEEEEEEEC
T ss_conf 6668706898717898602245457212465000311038777888889846999999999974-248898706999887
Q ss_pred CC-CEE------CCC-----------CCCCCEEEEE-------EECHHHHHHHHHHHHHHHH-------------HHH--
Q ss_conf 42-100------012-----------5775200004-------4441787689999998667-------------699--
Q gi|254780606|r 453 KM-LEL------SVY-----------DGIPHLLTPV-------VTNPKKAVMALKWAVREME-------------ERY-- 492 (744)
Q Consensus 453 k~-~~~------~~~-----------~~~ph~~~~v-------~~~~~~~~~~l~~~~~em~-------------~r~-- 492 (744)
-+ .+. +.| .+-+--+.|. +.+.+.....+....+.|- .|.
T Consensus 557 d~g~~~~~~a~gG~Y~~i~G~~T~~~~g~~~~~NPl~~~~g~~l~~t~~n~~F~~~~~~~l~~~~~~~~~~~~~~~~~~~ 636 (931)
T TIGR00929 557 DRGMEIFIRALGGKYLEIKGDATVAADGEPFGFNPLQGIDGEALEDTERNRAFLKEWLAMLVTLDGETDEEISAEDRNAL 636 (931)
T ss_pred CCCCHHHHEEECCEEEEECCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 89821041111745653033010167888665680201233677777244079999999998512766543678999999
Q ss_pred -----HHHHHC-----CCCCHHHHHHHH------------------HHH-H----C------CCCC-CCCCC--------
Q ss_conf -----999980-----778679999988------------------642-0----2------6776-66543--------
Q gi|254780606|r 493 -----RKMSHL-----SVRNIKSYNERI------------------STM-Y----G------EKPQ-GCGDD-------- 524 (744)
Q Consensus 493 -----~~~~~~-----~~~~i~~~n~~~------------------~~~-~----~------~~~~-~~~~~-------- 524 (744)
.++... ..|+|..+-.-+ ... + + +... ...+.
T Consensus 637 ~~~i~~~~~~~~~~~~~~r~l~~l~~~l~~~~~~~~~~~~~l~~~L~~w~~~~~~G~~Gef~wLFD~~~~D~Ldl~~~~~ 716 (931)
T TIGR00929 637 SSAIDSLYEEDQKEHPAIRSLSDLLNFLPKDSIEVVEARNSLADRLERWLKGGDYGGDGEFQWLFDGNETDSLDLSKADI 716 (931)
T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCE
T ss_conf 99988887314411255220899999725775300045023899988751789875552032110689754123789714
Q ss_pred --------------------------------CCCC-CEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEE
Q ss_conf --------------------------------2338-6799984456876753103589999999996420135899985
Q gi|254780606|r 525 --------------------------------MRPM-PYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMAT 571 (744)
Q Consensus 525 --------------------------------~~~~-p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihlilat 571 (744)
+..- -+.+++||||-.+. ...-++..|..+....|-..=++|+||
T Consensus 717 ~gfd~~~ll~~~e~~~~~~p~~~YLf~Ri~~~~dg~~r~~~~~~DEaw~~l--~~p~~~~~i~~~l~t~RK~NG~~v~AT 794 (931)
T TIGR00929 717 IGFDLTELLDNPELEKVATPVLLYLFHRIEEALDGSNRRFLIVIDEAWKLL--GDPVFAAKIKDWLKTLRKANGIVVLAT 794 (931)
T ss_pred EEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHH--CCHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf 787554642476866789999999999999972413586799851305332--690789999999875766097798630
Q ss_pred CCC-CCCC----CHHHHHHCCCCEEEEECC--CHHHCCHHCC
Q ss_conf 165-4444----146788505630572036--8111003267
Q gi|254780606|r 572 QRP-SVDV----ITGTIKANFPIRISFQVT--SKIDSRTILG 606 (744)
Q Consensus 572 Qrp-~~~v----i~~~ik~n~~~ri~~~v~--~~~dsr~il~ 606 (744)
|-| + |. |--.|..|+++.|+|.=. +..|.+-.++
T Consensus 795 Q~~Y~-d~~~s~i~~~~~~~~~T~I~lPn~~a~~~dy~~~f~ 835 (931)
T TIGR00929 795 QSIYN-DALESRIADTLIEQCATKIFLPNPKADREDYAEGFG 835 (931)
T ss_pred CHHHH-HHHCCCHHHHHHHHCCCEEECCCCCCCHHHHHHHCC
T ss_conf 01477-763154246889615834324884568589998558
No 19
>pfam01935 DUF87 Domain of unknown function DUF87. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=98.01 E-value=1e-05 Score=58.19 Aligned_cols=61 Identities=30% Similarity=0.538 Sum_probs=48.2
Q ss_pred EEEEECC--CCCEEECCHHHC--CCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEEC
Q ss_conf 9842057--887321120114--8469970787534479999999999856801107999723421000
Q gi|254780606|r 394 LCLGKTI--SGESVIADLANM--PHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELS 458 (744)
Q Consensus 394 ~~~g~~~--~g~~~~~dl~~~--PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~ 458 (744)
+.+|+=+ ..-+|+.|+.++ -|+.|.|+||||||.++..|+.+|+-. ....++++||-+ |+.
T Consensus 1 i~IG~l~~~~~v~v~ld~~~lv~rH~aIlg~TGsGKS~tv~vLl~~l~~~---~~~~vlVfDpHg-EY~ 65 (218)
T pfam01935 1 IEIGRLLDGSEVPVYLDLNKLVSRHFAILGSTGSGKSNTVAVLLEELLEK---KGATVLIFDPHG-EYG 65 (218)
T ss_pred CEECCCCCCCCCEEEEEHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHC---CCCCEEEECCCC-CCH
T ss_conf 96023168898138963899634214787269997699999999999854---799789982886-363
No 20
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.97 E-value=0.00093 Score=44.75 Aligned_cols=218 Identities=21% Similarity=0.252 Sum_probs=101.7
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHC-------------C-CCCEE-EEEC-----CCCEEEEECCCCCCCEEEHHHHHCCHH
Q ss_conf 54888639999859999998714-------------7-76327-7518-----983454426888887076587512812
Q gi|254780606|r 325 EPAPGIKSSRVIGLADDIARSMS-------------S-LSARV-AVIP-----KRNAIGIELPNETRETVYLRQIIESRS 384 (744)
Q Consensus 325 ~~~~g~~~~~~~~~~~d~~~~~~-------------~-~~~~~-~~~p-----g~~~~~~~~p~~~~~~v~~~~~~~~~~ 384 (744)
...+....+.+..+..-||.... - .+.|| +.+| |.-++-|..| ......|.|+.....
T Consensus 46 ~~~~~~~~~~l~~l~~~ia~~~~~~~~~~~P~l~a~Lp~G~Rv~~v~pp~~~~g~~~ltIRk~--~~~~~tl~dl~~~G~ 123 (332)
T PRK13900 46 EQIPELDLSHLKALGRLIAQATEQKISEEKPLLSATLPNGYRIQIVFPPACEIGQIIYSIRKP--SGMQLTLDDYEKMGA 123 (332)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCEEEEECC--CCCCCCHHHHHHCCC
T ss_conf 057759999999999999998099666789668999189846899837831599847999788--888899999986498
Q ss_pred HCCCCCCEEE-E----EEEC-CCCC--EEECCHH-HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCC
Q ss_conf 1146783689-8----4205-7887--3211201-148469970787534479999999999856801107999723421
Q gi|254780606|r 385 FSHSKANLAL-C----LGKT-ISGE--SVIADLA-NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKML 455 (744)
Q Consensus 385 ~~~~~~~l~~-~----~g~~-~~g~--~~~~dl~-~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~ 455 (744)
|......-.. . +..- ..++ .++.... .-=.+||+|.||||||+|||+++.. -|.+-|++.|-- -.
T Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~fL~~aV~~r~NilI~G~TgSGKTTll~aL~~~-----ip~~eRiitIED-t~ 197 (332)
T PRK13900 124 FDETATESLVDEDDVILNELLAEKKIKEFLEHAVISKKNIIISGGTSTGKTTFTNAALRE-----IPAIERLITVED-AR 197 (332)
T ss_pred CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHC-----CCCCCCEEEECC-CH
T ss_conf 665554201341567788764105799999999864871999888898899999999835-----895353566314-06
Q ss_pred EECCCC--CCCCEEEEEEECHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE
Q ss_conf 000125--775200004444178768999999-86676999999807786799999886420267766654323386799
Q gi|254780606|r 456 ELSVYD--GIPHLLTPVVTNPKKAVMALKWAV-REMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIV 532 (744)
Q Consensus 456 ~~~~~~--~~ph~~~~v~~~~~~~~~~l~~~~-~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~iv 532 (744)
||.... +.-|++..--. .......+..++ .-|.-| |- .
T Consensus 198 EL~l~~~pn~v~l~~~~~~-~g~~~vt~~~Ll~~aLR~r-------------------------------------PD-R 238 (332)
T PRK13900 198 EIVLSSHPNRVHLLASKGG-QGRAKVTTQDLIEACLRLR-------------------------------------PD-R 238 (332)
T ss_pred HHCCCCCCCEEEEEECCCC-CCCCEECHHHHHHHHHCCC-------------------------------------CC-E
T ss_conf 6356668888999971688-8866086999999975689-------------------------------------97-5
Q ss_pred EEHHHHH-----HHH------------HHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEEC
Q ss_conf 9844568-----767------------53103589999999996420135899985165444414678850563057203
Q gi|254780606|r 533 IIVDEMA-----DLM------------MVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQV 595 (744)
Q Consensus 533 vviDE~a-----~l~------------~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v 595 (744)
||+-|+. +++ ..+.......+.||+.+....|.. .+.+.+...|.+.++.=|-++.
T Consensus 239 IivGEvRG~EA~~~l~A~nTGH~Gs~tTiHA~sa~~a~~Rl~~l~~~~~~~-------~~~~~i~~~i~~aiDvVV~~~r 311 (332)
T PRK13900 239 IIVGELRGAEAFSFLRAINTGHPGSISTLHADSPAMAIEQLKLMVMQAGLG-------MPPDQIKKYILNVVDIVVQLKR 311 (332)
T ss_pred EEECCCCHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHCCC-------CCHHHHHHHHHHHCCEEEEEEE
T ss_conf 844555719999999999769997114627899999999999999851689-------8999999999985899999988
Q ss_pred C
Q ss_conf 6
Q gi|254780606|r 596 T 596 (744)
Q Consensus 596 ~ 596 (744)
.
T Consensus 312 ~ 312 (332)
T PRK13900 312 G 312 (332)
T ss_pred C
T ss_conf 4
No 21
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.92 E-value=3.6e-05 Score=54.48 Aligned_cols=268 Identities=15% Similarity=0.199 Sum_probs=129.0
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCC--EECCCCCCCCEE-EEEEECHHHHHHHHHHHHHH
Q ss_conf 148469970787534479999999999856801107999723421--000125775200-00444417876899999986
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKML--ELSVYDGIPHLL-TPVVTNPKKAVMALKWAVRE 487 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~--~~~~~~~~ph~~-~~v~~~~~~~~~~l~~~~~e 487 (744)
.-++++|.|.||.|||..++.++-.|- . ....++++.|+++.. .+..|..+-+-+ ..-+.
T Consensus 54 ~~~n~~I~G~pGTGKT~~vk~v~~~l~-~-~~~~~~~vyINc~~~~t~~~i~~~i~~~L~~~~~p--------------- 116 (394)
T PRK00411 54 RPSNVLILGPPGTGKTTTVKKVFEELE-E-AALKVVYVYINCQIDRTRYAILSEIARSLFGHPPP--------------- 116 (394)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHH-H-HCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCC---------------
T ss_conf 998479988999989999999999999-7-46896599996966898999999999995699898---------------
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEE
Q ss_conf 67699999980778679999988642026776665432338679998445687675310358999999999642013589
Q gi|254780606|r 488 MEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHL 567 (744)
Q Consensus 488 m~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihl 567 (744)
..|...-.-|+........ .-.++|||+||+..|....+.++--.|.|+-..--...+.+
T Consensus 117 ---------~~G~s~~~~~~~l~~~l~~-----------~~~~~ivvLDEiD~L~~~~~~~vLY~L~r~~~~~~~~~~~v 176 (394)
T PRK00411 117 ---------SSGLSFDELFDKIAEYLDE-----------RDRVLIVALDDINYLVEKEGNDVLYSLLRAHEEYPGARIGV 176 (394)
T ss_pred ---------CCCCCHHHHHHHHHHHHHC-----------CCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCEEE
T ss_conf ---------7787899999999998616-----------69758999965540203665089999985402268873899
Q ss_pred EEEECCCC-CCCCHHHHHHCC-CCEEEEECCCHHHCCHHCCCC-------CH-----HHH----C--CCCCE------EE
Q ss_conf 99851654-444146788505-630572036811100326763-------16-----885----6--89846------86
Q gi|254780606|r 568 IMATQRPS-VDVITGTIKANF-PIRISFQVTSKIDSRTILGEH-------GA-----EQL----L--GRGDM------LY 621 (744)
Q Consensus 568 ilatQrp~-~~vi~~~ik~n~-~~ri~~~v~~~~dsr~il~~~-------ga-----e~l----~--g~gd~------l~ 621 (744)
|.-+...+ .+.+...+++.+ +.+|.|.==+...=+.||... |+ =.| . -.||+ |.
T Consensus 177 I~IsN~~~~~~~Ldprv~S~l~~~~i~F~PY~~~qL~~IL~~R~~~af~~gv~~~~~i~~~A~~~a~~~GDaR~Aldllr 256 (394)
T PRK00411 177 IGISSDLTFLYILDPRVKSVFGPEEIVFPPYTADEIFDILKDRVEEGFYPGVVSDEVLELIADLTGREHGDARVAIDLLR 256 (394)
T ss_pred EEEECCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99976871776640777502786289858999899999999999841455678978999999998550475899999999
Q ss_pred ECCCCCEEEEEE-CCCCHHHHHHHHHHHHHCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 468984389993-43898899999999984088753111-------1245555444456677777776603899999999
Q gi|254780606|r 622 MSGGGRIQRVHG-PLVSDIEIEKVVQHLKKQGCPEYLNT-------VTTDTDTDKDGNNFDSEEKKERSNLYAKAVDLVI 693 (744)
Q Consensus 622 ~~~~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (744)
..+ +.-.-.| .-|+.+.|++..+......--+.+.. ++..-..-. . .+...-...++|+.-..+.-
T Consensus 257 ~A~--e~Ae~~g~~~Vt~~hV~~A~~~~~~~~~~~~i~~L~~~~klvL~ai~~~~-~---~~~~~~~~g~vy~~Y~~lc~ 330 (394)
T PRK00411 257 RAG--EIAEREGSRKVTEEDVRKAYEKSEPVHLEEVLRTLPLHEKLLLLAIVRLL-E---KGAPYVTTGEVYEEYKELCE 330 (394)
T ss_pred HHH--HHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHH-C---CCCCCCCHHHHHHHHHHHHH
T ss_conf 999--99997189965899999999986000088998738998999999999985-1---78876638999999999999
Q ss_pred HCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 7498623220000010078999999999987975702
Q gi|254780606|r 694 DNQRCSTSFIQRRLQIGYNRAALLVERMEQEGLVSEA 730 (744)
Q Consensus 694 ~~~~~s~s~~qr~~~~g~~ra~~~~~~~e~~g~~~~~ 730 (744)
..+.- ..+|.|--.++..||..|||.-.
T Consensus 331 ~~~~~---------~ls~~~~~~~l~~L~~~giI~~~ 358 (394)
T PRK00411 331 ELGYE---------PRSHTRFYEYLNKLDMLGLINTR 358 (394)
T ss_pred HCCCC---------CCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 73998---------88799999999999867985888
No 22
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=97.86 E-value=1.7e-05 Score=56.71 Aligned_cols=190 Identities=27% Similarity=0.356 Sum_probs=100.5
Q ss_pred EEECCHHHCC--CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEE-CCCCCEECCCCCCCCEEEEEEECHHHHHHH
Q ss_conf 3211201148--4699707875344799999999998568011079997-234210001257752000044441787689
Q gi|254780606|r 404 SVIADLANMP--HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMV-DPKMLELSVYDGIPHLLTPVVTNPKKAVMA 480 (744)
Q Consensus 404 ~~~~dl~~~P--H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~li-D~k~~~~~~~~~~ph~~~~v~~~~~~~~~~ 480 (744)
+|+-++++-| =+||.|-||||||+-|=|||= |-|.-...+++=| ||=.+=|..-..+=|-. -|=.|.+....+
T Consensus 117 ~v~~~~a~~~~GLiLVTGPTGSGKSTTlAsmID---yIN~~~~~HIiTIEDPIEyvh~~~~sli~QR-EvG~DT~sF~~A 192 (350)
T TIGR01420 117 PVLRELAERPRGLILVTGPTGSGKSTTLASMID---YINKNKAGHIITIEDPIEYVHKNKRSLINQR-EVGLDTLSFANA 192 (350)
T ss_pred HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHH---HHHCCCCCCCEEEECCEEEEECCCEEEEECC-CCCCCHHHHHHH
T ss_conf 899999836699389876889867899999997---8740388882563177314104770245436-246754579999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 99999866769999998077867999998864202677666543233867999844568767531035899999999964
Q gi|254780606|r 481 LKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMA 560 (744)
Q Consensus 481 l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ 560 (744)
|+.+- +..+ =||.|-|+.|+ .-| ++|-.|
T Consensus 193 LraAL----------------------------ReDP-------------DvILiGE~RD~-----ET~-----~~AL~A 221 (350)
T TIGR01420 193 LRAAL----------------------------REDP-------------DVILIGEMRDL-----ETV-----ELALTA 221 (350)
T ss_pred HHHHH----------------------------CCCC-------------CEEEEECCCCH-----HHH-----HHHHHH
T ss_conf 76841----------------------------0289-------------88998255627-----899-----999987
Q ss_pred HCCEEEEEEEECCCC--CCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCC-CCCEEEE-CCCCCEEEEEECCC
Q ss_conf 201358999851654--4441467885056305720368111003267631688568-9846864-68984389993438
Q gi|254780606|r 561 RAAGIHLIMATQRPS--VDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLG-RGDMLYM-SGGGRIQRVHGPLV 636 (744)
Q Consensus 561 ra~GihlilatQrp~--~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g-~gd~l~~-~~~~~~~r~~~~~~ 636 (744)
--.| ||||+|=-=. ++.|.+ |=+-||. .-+..=| ..=|++|.| -=.+|.. .+|+.=+-++=-.|
T Consensus 222 AETG-HLV~gTLHTnsA~~ti~R-Iid~FP~------~~~~qiR----~~La~~L~Av~sQrL~p~~~G~GRv~~~Eil~ 289 (350)
T TIGR01420 222 AETG-HLVFGTLHTNSAAKTIER-IIDVFPA------EEQEQIR----TQLAESLVAVISQRLLPKKNGGGRVLAVEILI 289 (350)
T ss_pred HHHC-CHHHHHHHHHHHHHHHHH-HHCCCCH------HHHHHHH----HHHHHHHHHHHCCCCEEECCCCCEEEEEEEEC
T ss_conf 4213-156766664238887677-7425977------5668999----99987678770005422338962588887521
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 988999999999840887531111245
Q gi|254780606|r 637 SDIEIEKVVQHLKKQGCPEYLNTVTTD 663 (744)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (744)
...=|. ++||+.|+..-+..++..
T Consensus 290 ~Tpav~---~lIre~gk~~qi~~~i~~ 313 (350)
T TIGR01420 290 NTPAVR---NLIREEGKTHQIKSVIQT 313 (350)
T ss_pred CCHHHH---HHHCCCCCHHHHHHHHHH
T ss_conf 587899---960287887689999871
No 23
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=97.85 E-value=6.5e-05 Score=52.70 Aligned_cols=213 Identities=22% Similarity=0.274 Sum_probs=118.0
Q ss_pred EEEEEEECCCC---CCHHHHHHHHHHHHHHH--C---------------CCCCEE-EEE-----CC-CCEEEEECCCCCC
Q ss_conf 58999754888---63999985999999871--4---------------776327-751-----89-8345442688888
Q gi|254780606|r 319 VTLYEFEPAPG---IKSSRVIGLADDIARSM--S---------------SLSARV-AVI-----PK-RNAIGIELPNETR 371 (744)
Q Consensus 319 ~~~~~~~~~~g---~~~~~~~~~~~d~~~~~--~---------------~~~~~~-~~~-----pg-~~~~~~~~p~~~~ 371 (744)
.++|++ |- ...+++..|+.-+|-.= . ..+-|| .+| .| |-.+-|..| .-
T Consensus 29 ~~~~d~---P~rkaLT~~~l~~La~~~A~~~nt~q~is~y~~P~LSa~LP~G~RvQ~V~PPAc~~~eTvs~tIRKp--S~ 103 (328)
T TIGR02788 29 TQRFDV---PERKALTFSHLRRLARAVASFSNTKQSISEYENPILSATLPGGERVQIVIPPACENDETVSITIRKP--SL 103 (328)
T ss_pred EEEEEC---CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEECC--CC
T ss_conf 888726---7522441899999999988765378620102286378886999479998068758988589999526--44
Q ss_pred CEEEHHHHHCCHHHCCCCCCEEEEEEE-CCCCCEEECCH------------H--HCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 707658751281211467836898420-57887321120------------1--14846997078753447999999999
Q gi|254780606|r 372 ETVYLRQIIESRSFSHSKANLALCLGK-TISGESVIADL------------A--NMPHILVAGTTGSGKSVAINTMIMSL 436 (744)
Q Consensus 372 ~~v~~~~~~~~~~~~~~~~~l~~~~g~-~~~g~~~~~dl------------~--~~PH~lvaG~TgsGKS~~l~~~i~sl 436 (744)
....|.|+-....|.....- .+.-.. -.+-+-=..+| | .-=-++|+|.||||||+|+|++|
T Consensus 104 ~~~sL~dy~~~G~F~~ar~~-~~~~~~~~~d~~~~L~el~~~g~~~~Fl~~Ai~~~knIii~GGTgSGKTTf~kal~--- 179 (328)
T TIGR02788 104 VDLSLDDYEEKGFFDTARAV-VVPASTELSDKDEELLELLDAGDIKEFLRLAIASRKNIIISGGTGSGKTTFLKALV--- 179 (328)
T ss_pred CCCCHHHHHHCCCCCEEEEE-ECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH---
T ss_conf 45547999627985447776-31443443468999999986288879999998738919999068971899999997---
Q ss_pred HHHCCHHHEEEEEE-CCCCCEECCCCCCCCEEEEEE-EC---HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHH
Q ss_conf 98568011079997-234210001257752000044-44---178768999999866769999998077867999-9988
Q gi|254780606|r 437 LYRLRPDECRMIMV-DPKMLELSVYDGIPHLLTPVV-TN---PKKAVMALKWAVREMEERYRKMSHLSVRNIKSY-NERI 510 (744)
Q Consensus 437 ~~~~~p~~~~~~li-D~k~~~~~~~~~~ph~~~~v~-~~---~~~~~~~l~~~~~em~~r~~~~~~~~~~~i~~~-n~~~ 510 (744)
.+=|.+=|||-| |-....+..-.+.-||+..-- .. .-....+|+.|-+.-=.| -+|.|++-+..-.| |.-
T Consensus 180 --~~IP~~ER~iTIED~~E~~~~hhpN~V~L~ysk~v~~g~~~vt~~~Ll~scLRMrPDR-I~LgELRG~Eaf~F~~~~- 255 (328)
T TIGR02788 180 --KEIPKDERLITIEDTRELFLPHHPNKVHLFYSKGVGQGSAKVTPKDLLESCLRMRPDR-ILLGELRGDEAFDFIRAV- 255 (328)
T ss_pred --HCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCH-HHHHHHCCHHHHHHHHHH-
T ss_conf --3276225278885201147888986456553464234435689899999971177405-767430332578888752-
Q ss_pred HHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHH--CCEEEE
Q ss_conf 642026776665432338679998445687675310358999999999642--013589
Q gi|254780606|r 511 STMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMAR--AAGIHL 567 (744)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~r--a~Gihl 567 (744)
.+|++.. +...+....+.++.|||.|-- .+|.+|
T Consensus 256 ---------nsGHpGs--------------iTT~HA~s~~~Af~qla~l~k~s~~g~gL 291 (328)
T TIGR02788 256 ---------NSGHPGS--------------ITTVHAGSPEEAFEQLALLVKESQAGLGL 291 (328)
T ss_pred ---------CCCCCCC--------------EEEEEECCHHHHHHHHHHHHHCCHHHCCC
T ss_conf ---------0598860--------------56787189899999999987202543588
No 24
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=97.84 E-value=2.1e-05 Score=56.09 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=53.9
Q ss_pred CCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCC-CC-----CHHHHHHCCCCEEEEECCCHHHC
Q ss_conf 8679998445687675310358999999999642013589998516544-44-----14678850563057203681110
Q gi|254780606|r 528 MPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSV-DV-----ITGTIKANFPIRISFQVTSKIDS 601 (744)
Q Consensus 528 ~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~-~v-----i~~~ik~n~~~ri~~~v~~~~ds 601 (744)
-.+|++|+|||+.|-. + ..|......+|..|=..||..|--+- .- ....|-+++.+|+-||+.|....
T Consensus 417 ~RRiWfiiDELpSL~K-----L-p~L~~~Lae~RKfGGc~VlG~Qs~aQL~~iYG~~~A~ti~dl~nTkl~fR~~d~~tA 490 (732)
T PRK13700 417 NRRVWFFCDELPTLHK-----L-PDLVEILPEARKFGGCYVFGIQSYAQLEDIYGEKAAATLFDVMNTRAFFRSPSHKIA 490 (732)
T ss_pred CCCEEEEEECCCCCCC-----C-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHH
T ss_conf 8615999754434334-----0-237899987520377589960649999998778789999986416689867987899
Q ss_pred CHH
Q ss_conf 032
Q gi|254780606|r 602 RTI 604 (744)
Q Consensus 602 r~i 604 (744)
+.+
T Consensus 491 ~~~ 493 (732)
T PRK13700 491 EFA 493 (732)
T ss_pred HHH
T ss_conf 999
No 25
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.84 E-value=0.00013 Score=50.66 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=68.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEE-------CCCCCCCCEE--EEEEECHHHHHHHHHH
Q ss_conf 846997078753447999999999985680110799972342100-------0125775200--0044441787689999
Q gi|254780606|r 413 PHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLEL-------SVYDGIPHLL--TPVVTNPKKAVMALKW 483 (744)
Q Consensus 413 PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~-------~~~~~~ph~~--~~v~~~~~~~~~~l~~ 483 (744)
-=.+|+|.||.|||.|+..++..++.+. ..+.+++=.-+..- +.+.+++... ....++ +. ...+..
T Consensus 14 ~L~vi~a~~g~GKS~~~~~la~~~a~~~---g~~V~~~SlEm~~~~~~~R~~s~~~~i~~~~i~~~~~~~-~~-~~~~~~ 88 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQ---GKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTGSLSD-ED-WERLAE 88 (242)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHC---CCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHCCCCCH-HH-HHHHHH
T ss_conf 1899996899999999999999999977---995999933353889999999998297745530265227-99-999999
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC------HHHHHHHHHHH
Q ss_conf 998667699999980778679999988642026776665432338679998445687675310------35899999999
Q gi|254780606|r 484 AVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG------KEIEGAIQRLA 557 (744)
Q Consensus 484 ~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~------~~~e~~~~~la 557 (744)
+...+....-.+......++.....++....... + + =+||||=+ .||.... .++.....+|-
T Consensus 89 ~~~~~~~~~l~i~d~~~~t~~~i~~~ir~~~~~~----~------~-~~vvvDyl-ql~~~~~~~~~~~~~i~~i~~~Lk 156 (242)
T cd00984 89 AIGELKELPIYIDDSSSLTVSDIRSRARRLKKEH----G------L-GLIVIDYL-QLMSGSKKKGNRQQEVAEISRSLK 156 (242)
T ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC----C------C-CEEEEEHH-HHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9998616988996699999999999999998836----9------9-89998269-854677766579999999999999
Q ss_pred HHHHCCEEEEEEEECCC
Q ss_conf 96420135899985165
Q gi|254780606|r 558 QMARAAGIHLIMATQRP 574 (744)
Q Consensus 558 ~~~ra~GihlilatQrp 574 (744)
++|+.++|++|+++|=-
T Consensus 157 ~lA~e~~v~Vi~~sQln 173 (242)
T cd00984 157 LLAKELNVPVIALSQLS 173 (242)
T ss_pred HHHHHHCCEEEEEECCC
T ss_conf 99999799399984678
No 26
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.83 E-value=0.00014 Score=50.32 Aligned_cols=141 Identities=17% Similarity=0.183 Sum_probs=68.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHH
Q ss_conf 48469970787534479999999999856801107999723421000125775200004444178768999999866769
Q gi|254780606|r 412 MPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEER 491 (744)
Q Consensus 412 ~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r 491 (744)
..|+|+.|.+|+|||++++.++..+...+ ..++.++........+.... ....+........
T Consensus 2 ~~~ill~G~~GsGKTtl~~~la~~~~~~~----~~v~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~ 63 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG----GGVIYIDGEDILEEVLDQLL--------------LIIVGGKKASGSG 63 (148)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCC----CCEEEEEHHHHHHHHHHHHH--------------HHHHCCCCCCCCH
T ss_conf 97899999997029999999998726689----96899875998988898765--------------3000112210519
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHH---HHHHHHHHHCCEEEEE
Q ss_conf 9999980778679999988642026776665432338679998445687675310358999---9999996420135899
Q gi|254780606|r 492 YRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGA---IQRLAQMARAAGIHLI 568 (744)
Q Consensus 492 ~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~---~~~la~~~ra~Gihli 568 (744)
. ..+........ ...+.||+|||+..+........... .....+.....++++|
T Consensus 64 ~--------~~~~~~~~~~~---------------~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 120 (148)
T smart00382 64 E--------LRLRLALALAR---------------KLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVI 120 (148)
T ss_pred H--------HHHHHHHHHHH---------------HCCCCEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 9--------99999999998---------------449989998275021476207999999999985176578998999
Q ss_pred EEECCCCCCCCHHHHHHCCCCEEEEE
Q ss_conf 98516544441467885056305720
Q gi|254780606|r 569 MATQRPSVDVITGTIKANFPIRISFQ 594 (744)
Q Consensus 569 latQrp~~~vi~~~ik~n~~~ri~~~ 594 (744)
++++. ....+++.++.-+..++-+.
T Consensus 121 ~~~n~-~~~~~~~~~~~~~~~~~~~~ 145 (148)
T smart00382 121 LTTND-EKDLGPALLRRRFDRRIVLL 145 (148)
T ss_pred EEECC-CCCCCHHHHCCCCCEEEEEE
T ss_conf 95699-52249877074478799982
No 27
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128 The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation.
Probab=97.80 E-value=3.3e-05 Score=54.67 Aligned_cols=55 Identities=42% Similarity=0.581 Sum_probs=41.3
Q ss_pred CCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEEC
Q ss_conf 78873211201148469970787534479999999999856801107999723421000
Q gi|254780606|r 400 ISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELS 458 (744)
Q Consensus 400 ~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~ 458 (744)
|+|-+++=.-.+.=|+||-||||||||++|+-|+..+ |..-| +.|+.|-.+.-..
T Consensus 196 i~g~~l~K~~sE~Qh~L~~GTtG~GKs~~lr~LL~~i--R~rGd--~AIiYDkgC~f~~ 250 (613)
T TIGR02759 196 IGGLPLIKKGSEVQHILIHGTTGSGKSVALRKLLRWI--RQRGD--RAIIYDKGCTFVS 250 (613)
T ss_pred ECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHH--HHCCC--EEEEEECCCCCCC
T ss_conf 0780678777742252664541743899999999999--86398--5899825742021
No 28
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.69 E-value=0.0007 Score=45.59 Aligned_cols=125 Identities=17% Similarity=0.192 Sum_probs=74.1
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHH
Q ss_conf 14846997078753447999999999985680110799972342100012577520000444417876899999986676
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEE 490 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~ 490 (744)
+..-++|-|.-.||||++|+++.+.+++.+.- ++ +=.+..++..|+.+- + .+.+.+....-+-....||.+
T Consensus 28 ~~~~~iiTGpN~sGKSt~lkti~l~~~laq~G----~~-vpa~~~~~~~~~~i~---~-~~~~~d~~~~~~S~F~~e~~~ 98 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGLAVLLAQIG----CF-VPAESASIPLVDRIF---T-RIGAEDSISDGRSTFMAELLE 98 (202)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHC----CE-EEECCCEEECCCEEE---E-EECCCHHHHCCCCHHHHHHHH
T ss_conf 98289998998875399999999999999838----73-720446894466699---9-846602444353549999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHH----HHHHHHHHHHCCEEE
Q ss_conf 9999998077867999998864202677666543233867999844568767531035899----999999964201358
Q gi|254780606|r 491 RYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEG----AIQRLAQMARAAGIH 566 (744)
Q Consensus 491 r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~----~~~~la~~~ra~Gih 566 (744)
-..++.... .+-+|++||+.. -+...+-.. .+..|.. .|.+
T Consensus 99 ~~~i~~~~~-----------------------------~~slvliDE~~~--gT~~~eg~~la~a~l~~l~~----~~~~ 143 (202)
T cd03243 99 LKEILSLAT-----------------------------PRSLVLIDELGR--GTSTAEGLAIAYAVLEHLLE----KGCR 143 (202)
T ss_pred HHHHHHHCC-----------------------------CCCEEEECCCCC--CCCHHHHHHHHHHHHHHHHH----CCCE
T ss_conf 999998677-----------------------------777242052347--99867879999999999985----3684
Q ss_pred EEEEECCCCCCCC
Q ss_conf 9998516544441
Q gi|254780606|r 567 LIMATQRPSVDVI 579 (744)
Q Consensus 567 lilatQrp~~~vi 579 (744)
.|++|-......+
T Consensus 144 ~i~tTH~~~L~~~ 156 (202)
T cd03243 144 TLFATHFHELADL 156 (202)
T ss_pred EEEEECCHHHHHH
T ss_conf 9998253888875
No 29
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.67 E-value=9.9e-05 Score=51.44 Aligned_cols=184 Identities=28% Similarity=0.385 Sum_probs=87.1
Q ss_pred EEECCHHHCC--CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHH-
Q ss_conf 3211201148--4699707875344799999999998568011079997234210001257752000044441787689-
Q gi|254780606|r 404 SVIADLANMP--HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMA- 480 (744)
Q Consensus 404 ~~~~dl~~~P--H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~- 480 (744)
+++.++++.| -+||.|.||||||.-|-+||--+ |.-...+++- +.|+-+..-.
T Consensus 115 ~i~~~~~~~~~GLILVTGpTGSGKSTTlAamId~i---N~~~~~HIlT---------------------IEDPIE~vh~s 170 (353)
T COG2805 115 PIVRELAESPRGLILVTGPTGSGKSTTLAAMIDYI---NKHKAKHILT---------------------IEDPIEYVHES 170 (353)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH---HCCCCCCEEE---------------------ECCCHHHHHCC
T ss_conf 79999982879669986799996787999999998---4147751687---------------------23746865043
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 99999866769999998077867999998864202677666543233867999844568767531035899999999964
Q gi|254780606|r 481 LKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMA 560 (744)
Q Consensus 481 l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ 560 (744)
-+.+ ... .+.|......+|+..+..+.. | =||.|-|+.|+ |+ | ++|-.|
T Consensus 171 kksl---I~Q-----REvG~dT~sF~~aLraALReD------------P-DVIlvGEmRD~--------ET-i-~~ALtA 219 (353)
T COG2805 171 KKSL---INQ-----REVGRDTLSFANALRAALRED------------P-DVILVGEMRDL--------ET-I-RLALTA 219 (353)
T ss_pred HHHH---HHH-----HHHCCCHHHHHHHHHHHHHCC------------C-CEEEEECCCCH--------HH-H-HHHHHH
T ss_conf 2766---668-----774542788999999986029------------9-97998213469--------99-9-999989
Q ss_pred HCCEEEEEEEECCCC--CCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCC-CCCEEEE-CCCCCEEEEEECCC
Q ss_conf 201358999851654--4441467885056305720368111003267631688568-9846864-68984389993438
Q gi|254780606|r 561 RAAGIHLIMATQRPS--VDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLG-RGDMLYM-SGGGRIQRVHGPLV 636 (744)
Q Consensus 561 ra~GihlilatQrp~--~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g-~gd~l~~-~~~~~~~r~~~~~~ 636 (744)
--.| |||++|=.-. ++.|.. |-+-||. ..+..=| ..=||.|.| --..|.. .+|+.-+-++--.+
T Consensus 220 AETG-HLV~~TLHT~sA~~ti~R-iidvFp~------~ek~~vR----~~La~sL~aVisQ~L~~~~~g~GRv~~~EIli 287 (353)
T COG2805 220 AETG-HLVFGTLHTNSAAKTIDR-IIDVFPA------EEKDQVR----SQLAESLRAVISQRLLPKKDGGGRVAAFEILI 287 (353)
T ss_pred HHCC-CEEEEECCCCCHHHHHHH-HHHHCCH------HHHHHHH----HHHHHHHHHHHHHHCEECCCCCCEEEEEHHHH
T ss_conf 8608-877774023637777779-8873886------3467999----99999999997633100368996146415774
Q ss_pred CHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9889999999998408875311
Q gi|254780606|r 637 SDIEIEKVVQHLKKQGCPEYLN 658 (744)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~ 658 (744)
...-| -++++ .++..-+.
T Consensus 288 ~TpAv---rnlIr-e~K~~qi~ 305 (353)
T COG2805 288 NTPAV---RNLIR-EGKTHQIP 305 (353)
T ss_pred CCHHH---HHHHH-CCCHHHHH
T ss_conf 78889---99984-48588899
No 30
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.65 E-value=0.0002 Score=49.39 Aligned_cols=143 Identities=20% Similarity=0.282 Sum_probs=71.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEEC-------CCCCCC-CEEEEEEECHHHHHHHHHHH
Q ss_conf 8469970787534479999999999856801107999723421000-------125775-20000444417876899999
Q gi|254780606|r 413 PHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELS-------VYDGIP-HLLTPVVTNPKKAVMALKWA 484 (744)
Q Consensus 413 PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~-------~~~~~p-h~~~~v~~~~~~~~~~l~~~ 484 (744)
==.+|||.||+|||.|+..++..++.++ ..+.+++-+-+..-. ...+.+ +....-..... ..++.+
T Consensus 31 eL~viaarpg~GKT~f~~~~a~~~~~~~---g~~vl~~SlEm~~~~~~~Rlls~~~g~~~~~~~~~~~~~~---e~~~~~ 104 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQH---GVRVGTISLEEPVVRTARRLLGQYAGKRLHLPDTVFIYTL---EEFDAA 104 (271)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHC---CCEEEEEECCCCHHHHHHHHHHHHHCCCHHHCCCCCCCHH---HHHHHH
T ss_conf 0899996899869999999999999976---9908999704999999999999982997110344677809---999999
Q ss_pred HHHHHH--HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC------HHHHHHHHHH
Q ss_conf 986676--99999980778679999988642026776665432338679998445687675310------3589999999
Q gi|254780606|r 485 VREMEE--RYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG------KEIEGAIQRL 556 (744)
Q Consensus 485 ~~em~~--r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~------~~~e~~~~~l 556 (744)
..++.. ++-+....+..++.....++....... +. =+||||=+..++.... ..+.....+|
T Consensus 105 ~~~~~~~~~l~i~d~~~~~~~~~i~~~ir~~~~~~----~~-------~~vvIDylqll~~~~~~~~d~~~~i~~i~~~L 173 (271)
T cd01122 105 FDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSH----GI-------QHIIIDNLSIMVSDERASGDERKALDEIMTKL 173 (271)
T ss_pred HHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHC----CC-------CEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99970799808878999988999999999999828----99-------88998317850367867731899999999999
Q ss_pred HHHHHCCEEEEEEEEC
Q ss_conf 9964201358999851
Q gi|254780606|r 557 AQMARAAGIHLIMATQ 572 (744)
Q Consensus 557 a~~~ra~GihlilatQ 572 (744)
-.+|+-++||+|+.+|
T Consensus 174 k~lAke~~v~Vi~lsQ 189 (271)
T cd01122 174 RGFATEHGIHITLVSH 189 (271)
T ss_pred HHHHHHHCCCEEEEEC
T ss_conf 9999997997799952
No 31
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=97.59 E-value=0.00088 Score=44.93 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=14.6
Q ss_pred HHCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 1148469970787534479999999
Q gi|254780606|r 410 ANMPHILVAGTTGSGKSVAINTMIM 434 (744)
Q Consensus 410 ~~~PH~lvaG~TgsGKS~~l~~~i~ 434 (744)
.+.+-++|+|.||||||+=|=-+|+
T Consensus 87 ~~nqVvii~GeTGsGKTTQiPq~~l 111 (1295)
T PRK11131 87 RDHQVVIVAGETGSGKTTQLPKICL 111 (1295)
T ss_pred HHCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 9799699976899987889999999
No 32
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.58 E-value=0.0011 Score=44.27 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=22.7
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 148469970787534479999999999
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
.-.|+|+.|.+|+|||.+.+.+...+.
T Consensus 18 ~~~~ill~GppGtGKT~la~~ia~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 998089989999886599999999712
No 33
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.54 E-value=0.0034 Score=40.95 Aligned_cols=139 Identities=25% Similarity=0.322 Sum_probs=73.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCC--CEECC-------CCCCCCEEEEEEECHHHHHHHHHHH
Q ss_conf 46997078753447999999999985680110799972342--10001-------2577520000444417876899999
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKM--LELSV-------YDGIPHLLTPVVTNPKKAVMALKWA 484 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~--~~~~~-------~~~~ph~~~~v~~~~~~~~~~l~~~ 484 (744)
++||.|.+|+|||+++..++..... ...+.+.+|... -+... -....+++....+........+.
T Consensus 1 ~~li~g~~g~GKttl~~~~~~~~~~----~~~~~~~~~~ee~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 74 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT----KGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLL-- 74 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH----CCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHH--
T ss_conf 9899989999899999999999876----3997999986664489999999862246713079993599976999999--
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHC-------CHHHHHHHHHHH
Q ss_conf 9866769999998077867999998864202677666543233867999844568767531-------035899999999
Q gi|254780606|r 485 VREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVA-------GKEIEGAIQRLA 557 (744)
Q Consensus 485 ~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~-------~~~~e~~~~~la 557 (744)
++..+ +.+ ...| .+||||.+.-+.... ...+-..+.+|.
T Consensus 75 --~~~~~---~~~----------------------------~~~~-vliiiDSit~~~~a~~e~~~g~~~~v~~~~~~L~ 120 (165)
T cd01120 75 --SKAER---LRE----------------------------RGGD-DLIILDELTRLVRALREIREGYPGELDEELRELL 120 (165)
T ss_pred --HHHHH---HHH----------------------------CCCC-EEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf --99999---998----------------------------6997-7999928899887740015886789999999999
Q ss_pred HHHHCCEEEEEEEECCCCCCCCH--------HHHHHCCCCEEEE
Q ss_conf 96420135899985165444414--------6788505630572
Q gi|254780606|r 558 QMARAAGIHLIMATQRPSVDVIT--------GTIKANFPIRISF 593 (744)
Q Consensus 558 ~~~ra~GihlilatQrp~~~vi~--------~~ik~n~~~ri~~ 593 (744)
..++..+|-+|+..|-+. |..+ ..++....+.|-|
T Consensus 121 ~~Ak~~~itvi~i~~v~~-d~~~~~~~~~g~~~l~~~~d~~i~L 163 (165)
T cd01120 121 ERARKGGVTVIFTLQVPS-GDKGDPRLTRGAQNLEDIADTVIVL 163 (165)
T ss_pred HHHHCCCCEEEEEEEEEC-CCCCCCCCCCHHHHHHHHCCEEEEE
T ss_conf 999779828999998433-7789977253888883642669998
No 34
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.54 E-value=0.00021 Score=49.20 Aligned_cols=143 Identities=16% Similarity=0.217 Sum_probs=67.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEE-EECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHH
Q ss_conf 4846997078753447999999999985680110799-972342100012577520000444417876899999986676
Q gi|254780606|r 412 MPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMI-MVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEE 490 (744)
Q Consensus 412 ~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~-liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~ 490 (744)
..=++|.|-.|+|||.+++.++-+| .++.+.++ +.++....-..|..+-.-+.--..+..+ ...++. +++
T Consensus 43 ~g~~lltGe~GtGKTtllr~l~~~l----~~~~~~~~~i~~~~l~~~~ll~~i~~~lg~~~~~~~~-~~~~~~----l~~ 113 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRL----DQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDK-AALLRE----LED 113 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHC----CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCH-HHHHHH----HHH
T ss_conf 9659997299898899999999845----9345489997699999999999999985989889899-999999----999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHH--HHHCCEEEEE
Q ss_conf 99999980778679999988642026776665432338679998445687675310358999999999--6420135899
Q gi|254780606|r 491 RYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQ--MARAAGIHLI 568 (744)
Q Consensus 491 r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~--~~ra~Gihli 568 (744)
+...+... + -..|+||||-..|-. ++-+.|..|.- ....-=+++|
T Consensus 114 ~L~~~~~~-----------------------g------~~~vliIDEAq~L~~----~~Le~Lr~L~n~e~~~~~ll~ii 160 (269)
T TIGR03015 114 FLIEQFAA-----------------------G------KRALLVVDEAQNLTP----ELLEELRMLSNFQTDNAKLLQIF 160 (269)
T ss_pred HHHHHHHC-----------------------C------CCEEEEEECHHHCCH----HHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 99999966-----------------------9------946999724221999----99999999970135888704899
Q ss_pred EEECCCCCCCCHHHHHHCCCCEEEEECC
Q ss_conf 9851654444146788505630572036
Q gi|254780606|r 569 MATQRPSVDVITGTIKANFPIRISFQVT 596 (744)
Q Consensus 569 latQrp~~~vi~~~ik~n~~~ri~~~v~ 596 (744)
|+-|--=.+.+...--..+.-||++++.
T Consensus 161 L~GqpeL~~~L~~~~~~~l~qRI~~~~~ 188 (269)
T TIGR03015 161 LVGQPEFRETLQSPQLQQLRQRIIASCH 188 (269)
T ss_pred EECCHHHHHHHCCCCHHHHHHCEEEEEE
T ss_conf 9578679998727402545550767998
No 35
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=97.53 E-value=0.00012 Score=50.81 Aligned_cols=145 Identities=20% Similarity=0.287 Sum_probs=75.9
Q ss_pred HHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCC-------CHHHHHHHHHHHHHHHCCCCC----EE-E--EEC--CCC
Q ss_conf 9998740355138986764892589997548886-------399998599999987147763----27-7--518--983
Q gi|254780606|r 297 LETILEEFGIKGEIINVNPGPVVTLYEFEPAPGI-------KSSRVIGLADDIARSMSSLSA----RV-A--VIP--KRN 360 (744)
Q Consensus 297 l~~~l~~~~~~~~~~~~~~gp~~~~~~~~~~~g~-------~~~~~~~~~~d~~~~~~~~~~----~~-~--~~p--g~~ 360 (744)
|...+.-|==+.+|+.+-.-|=-.+|==+++.|+ ...+...+=.-+|-.|...-- +| . |+- |.-
T Consensus 10 lG~~i~~~LdD~~vvEIMLNpDG~Lwve~Lg~G~~~~G~t~~~~~a~~Ii~~vA~~l~~~V~~~~PivegELPldflGsR 89 (315)
T TIGR02782 10 LGPEIAAALDDPKVVEIMLNPDGKLWVERLGEGMEPLGKTVSPADAERIIGLVADYLGTEVDRDKPIVEGELPLDFLGSR 89 (315)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCEEEECCCCCHHHCC
T ss_conf 89999997379883899866987010500679730016611789999999999876446043578626610751112011
Q ss_pred EEEEECCCCCCCEEEHHHHHCCHHHCC-CCCCEEEEEEECCCCCEE-------ECCH-HHCCCEEEEECCCCCHHHHHHH
Q ss_conf 454426888887076587512812114-678368984205788732-------1120-1148469970787534479999
Q gi|254780606|r 361 AIGIELPNETRETVYLRQIIESRSFSH-SKANLALCLGKTISGESV-------IADL-ANMPHILVAGTTGSGKSVAINT 431 (744)
Q Consensus 361 ~~~~~~p~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~g~~~~g~~~-------~~dl-~~~PH~lvaG~TgsGKS~~l~~ 431 (744)
.-|.=-| |.+...|.- .++.-=+-|=-.++.... +.+. .--=-.||.|.||||||++-|+
T Consensus 90 FeGl~PP-----------VV~~p~F~IRkkA~~vfTLDdYV~~gimtaaQ~d~l~~Av~ar~NIlv~GGTGSGKTTLaNA 158 (315)
T TIGR02782 90 FEGLLPP-----------VVEAPSFAIRKKAVRVFTLDDYVEAGIMTAAQRDVLREAVAARKNILVVGGTGSGKTTLANA 158 (315)
T ss_pred CCCCCCC-----------CCCCCCCHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
T ss_conf 0046877-----------55655101110224104707776404455789999999997129889981458857999999
Q ss_pred HHHHHHHHCCHHHEEEEEE-CCC
Q ss_conf 9999998568011079997-234
Q gi|254780606|r 432 MIMSLLYRLRPDECRMIMV-DPK 453 (744)
Q Consensus 432 ~i~sl~~~~~p~~~~~~li-D~k 453 (744)
+|.-+..-+.|++ |+++| |-.
T Consensus 159 lla~I~~l~~P~d-R~vIiEDT~ 180 (315)
T TIGR02782 159 LLAEIAKLNDPDD-RVVIIEDTA 180 (315)
T ss_pred HHHHHHHCCCCCC-EEEEEECCH
T ss_conf 9998852169996-189985471
No 36
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.50 E-value=0.0013 Score=43.87 Aligned_cols=147 Identities=16% Similarity=0.157 Sum_probs=68.8
Q ss_pred HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCE-------ECCCCCCCCEE--EEEEECHHHHHHH
Q ss_conf 11484699707875344799999999998568011079997234210-------00125775200--0044441787689
Q gi|254780606|r 410 ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLE-------LSVYDGIPHLL--TPVVTNPKKAVMA 480 (744)
Q Consensus 410 ~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~-------~~~~~~~ph~~--~~v~~~~~~~~~~ 480 (744)
...-=.+|+|.||+|||.|+..+...++.+. ..+.+++.+-+.. ++...+++... ..-.++. . ...
T Consensus 17 ~~G~l~vi~g~pg~GKS~~~~~~a~~~a~~~---g~~Vl~~slEm~~~~~~~R~~a~~~~v~~~~i~~~~~~~~-~-~~~ 91 (186)
T pfam03796 17 QKGDLIIIAARPSMGKTAFALNIARNAALKQ---DKPVLFFSLEMSAEQLAERLLSSESRISSSKLRSGQLSDE-D-WER 91 (186)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHCCCHHHH-H-HHH
T ss_conf 8881799996799987999999999999970---9966875475529999999999862676555412512167-9-999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC--------HHHHHH
Q ss_conf 999998667699999980778679999988642026776665432338679998445687675310--------358999
Q gi|254780606|r 481 LKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG--------KEIEGA 552 (744)
Q Consensus 481 l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~--------~~~e~~ 552 (744)
+..+..++....-.+......++.....++....... ..=+||||=+. ||...+ .++...
T Consensus 92 ~~~~~~~~~~~~l~i~~~~~~t~~~i~~~i~~~~~~~-----------~~~~vvvDyl~-l~~~~~~~~~~~r~~~v~~i 159 (186)
T pfam03796 92 LAEAAGELSEAPLYIDDTPGLSLSELRAQARRLKREH-----------GLGLIVIDYLQ-LMQGSKASKSENRQQEISEI 159 (186)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHC-----------CCCEEEEEHHH-HCCCCCCCCCCCHHHHHHHH
T ss_conf 9999999853986884799998999999999999855-----------99889974898-63677888775599999999
Q ss_pred HHHHHHHHHCCEEEEEEEECC
Q ss_conf 999999642013589998516
Q gi|254780606|r 553 IQRLAQMARAAGIHLIMATQR 573 (744)
Q Consensus 553 ~~~la~~~ra~GihlilatQr 573 (744)
..+|.++|+-.+|.+|+++|=
T Consensus 160 ~~~Lk~lA~e~~i~ii~~sQl 180 (186)
T pfam03796 160 SRSLKALAKELNIPVIALSQL 180 (186)
T ss_pred HHHHHHHHHHHCCCEEEEECC
T ss_conf 999999999979918997225
No 37
>pfam04665 Pox_A32 Poxvirus A32 protein. The A32 protein is thought to be involved in viral DNA packaging.
Probab=97.44 E-value=0.0024 Score=41.99 Aligned_cols=150 Identities=18% Similarity=0.320 Sum_probs=90.2
Q ss_pred CHHHCC-CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC-CCEECCCCCCCCEEEEEEECHHHHHHHHHHHH
Q ss_conf 201148-4699707875344799999999998568011079997234-21000125775200004444178768999999
Q gi|254780606|r 408 DLANMP-HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK-MLELSVYDGIPHLLTPVVTNPKKAVMALKWAV 485 (744)
Q Consensus 408 dl~~~P-H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k-~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~ 485 (744)
.|-+.| .+.+-|.|||||+++|.+++..|..++. +++|+-|= .-+...| -.|.++.. ++..++..-+|.
T Consensus 8 sLl~~pFrmaivGgSGSGKT~yLlsLf~tlv~kyk----hIfLfTpv~N~~Yd~Y-VwPdHV~~-vtt~eeleY~L~--- 78 (241)
T pfam04665 8 SLLAAPFRMAIVGGSGSGKTTYLLSLLRTLVRKFK----HIFLFTPVYNNAYDGY-VWPDHIFK-VTTNEELEYALS--- 78 (241)
T ss_pred HHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHE----EEEEECCCCCCCCCCC-CCCCCEEE-ECCHHHHHHHHH---
T ss_conf 67408735999815887566999999999977415----8999624467323652-57773256-257235778999---
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEE
Q ss_conf 86676999999807786799999886420267766654323386799984456876753103589999999996420135
Q gi|254780606|r 486 REMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGI 565 (744)
Q Consensus 486 ~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gi 565 (744)
.+.+. |..|-++.... + .--..++|.|.+.|.-... ..+..+.--||-+-|
T Consensus 79 -~~k~k-----------Iek~~~~~~~~-----k-------~~~~fLiIlDD~Gd~q~rs-----~~L~~f~N~gRH~n~ 129 (241)
T pfam04665 79 -KTKEK-----------IEKFSKKASNQ-----K-------ENFRFLIILDDLGDMQTRS-----KTLLNFTNHGRHLNI 129 (241)
T ss_pred -HHHHH-----------HHHHHHHCCCC-----C-------CCEEEEEEECCCCCHHHHH-----HHHHHHHCCCCCHHH
T ss_conf -99999-----------99999860266-----6-------4104899962555323311-----577766401610101
Q ss_pred EEEEEECCCCCCCCHHHHHHCCCCEEEEECCC
Q ss_conf 89998516544441467885056305720368
Q gi|254780606|r 566 HLIMATQRPSVDVITGTIKANFPIRISFQVTS 597 (744)
Q Consensus 566 hlilatQrp~~~vi~~~ik~n~~~ri~~~v~~ 597 (744)
-+|+--|+=. -++..=|+.+..=.|.-|.+
T Consensus 130 Sii~Lcqty~--Hvp~n~R~Sith~cccNvs~ 159 (241)
T pfam04665 130 SIILLCQTYK--HVPVNGRDSITHFCCCNVSD 159 (241)
T ss_pred EEEEEEEEEE--CCCCCCCCCCEEEEEECCCH
T ss_conf 1134442211--04998743204899831546
No 38
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.44 E-value=0.00016 Score=49.93 Aligned_cols=112 Identities=21% Similarity=0.364 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHHHHCC---------------CCCEE-EE---ECCCCEEEEECCCCCCCEEEHHHHHCCHHHCCCC
Q ss_conf 86399998599999987147---------------76327-75---1898345442688888707658751281211467
Q gi|254780606|r 329 GIKSSRVIGLADDIARSMSS---------------LSARV-AV---IPKRNAIGIELPNETRETVYLRQIIESRSFSHSK 389 (744)
Q Consensus 329 g~~~~~~~~~~~d~~~~~~~---------------~~~~~-~~---~pg~~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~ 389 (744)
-..-+....+..-+|..+.. .+.|+ +. +-+..++-|..+ ....+.|.|++++..+....
T Consensus 56 ~~~~~~~~~~i~~iA~~~g~~id~~~Pilda~LP~~G~R~~~v~PP~~~g~sitIRk~--~~~~~tl~dlv~~g~~t~~~ 133 (323)
T PRK13833 56 EMSSAAAEIVIGSVAHALQSEADDERPIISGELPIGGHRFEGLLPPVVSGPAFTIRRR--ASRLIPLDDYVRSKVMTEAQ 133 (323)
T ss_pred CCCHHHHHHHHHHHHHHHCCEECCCCCEEEEECCCCCEEEEEECCCCCCCCEEEEECC--CCCCCCHHHHHHCCCCCHHH
T ss_conf 5899999999999999859986689855899879999899998788679952999687--89999999998769999999
Q ss_pred CCEEEEEEECCCCCEEECCH-HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEE-CCCCCEECC
Q ss_conf 83689842057887321120-11484699707875344799999999998568011079997-234210001
Q gi|254780606|r 390 ANLALCLGKTISGESVIADL-ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMV-DPKMLELSV 459 (744)
Q Consensus 390 ~~l~~~~g~~~~g~~~~~dl-~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~li-D~k~~~~~~ 459 (744)
.. ++..+ ..--.+||+|.||||||+|||+++..+ ..+.|++ |++.| |-- ||..
T Consensus 134 ~~-------------~L~~aV~~r~nilVsGgTGSGKTTllnaL~~~i-~~~~p~e-RivtIEDt~--EL~~ 188 (323)
T PRK13833 134 AS-------------TIRSAISSRLNIVISGGTGSGKTTLANAVIAEI-VASAPED-RLVILEDTA--EIQC 188 (323)
T ss_pred HH-------------HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH-CCCCCHH-EEEEECCCC--CCCC
T ss_conf 99-------------999999818968999177775689999999864-0289323-399945750--1146
No 39
>COG0433 HerA helicase [Replication, recombination, and repair]
Probab=97.43 E-value=0.00013 Score=50.63 Aligned_cols=73 Identities=23% Similarity=0.434 Sum_probs=57.9
Q ss_pred EEEEHHHHHHHHHHC-CHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHC
Q ss_conf 999844568767531-035899999999964201358999851654444146788505630572036811100326
Q gi|254780606|r 531 IVIIVDEMADLMMVA-GKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTIL 605 (744)
Q Consensus 531 ivvviDE~a~l~~~~-~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il 605 (744)
++++|||...+.-.. .......+.++|+.||..|+.|+++||||+ .|...+..|..++|.|+..+..|-+.+.
T Consensus 393 ~~~iieea~~~~p~~~~~~~~~~~~~iar~gRk~~v~l~~~tQrps--~l~~~v~~~~~tkii~r~~~~~d~~~~~ 466 (520)
T COG0433 393 LLIVIEEAHNFAPSSRKAPVKDIIERIAREGRKFGVGLVLATQRPS--DLDDLVLSQANTKIILRLVEPTDQKYIS 466 (520)
T ss_pred CCEEHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECHH--HCCHHHHHCCCHHHHHCCCCCHHHHHHH
T ss_conf 4114077776387554214689999999860723541357886767--6307898610349774057822366656
No 40
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.40 E-value=0.0084 Score=38.21 Aligned_cols=140 Identities=20% Similarity=0.272 Sum_probs=70.9
Q ss_pred HHHHHHHCCCCEEEEEEEECCCEEEE-E--EECCCCCCHHHHHHHHHHHHHHHCC---------------CCCEE-EEEC
Q ss_conf 99987403551389867648925899-9--7548886399998599999987147---------------76327-7518
Q gi|254780606|r 297 LETILEEFGIKGEIINVNPGPVVTLY-E--FEPAPGIKSSRVIGLADDIARSMSS---------------LSARV-AVIP 357 (744)
Q Consensus 297 l~~~l~~~~~~~~~~~~~~gp~~~~~-~--~~~~~g~~~~~~~~~~~d~~~~~~~---------------~~~~~-~~~p 357 (744)
|+..|++=+|.=-.+| .+|-+..-- - .+....+....+.++..-||..... .+-|+ +.+|
T Consensus 27 l~~~L~Dp~VtEI~iN-~~~~Vwver~G~~~~~~~~l~~~~~~~~i~~lA~~~g~~i~~~~Pi~da~Lp~dG~R~~~~~p 105 (320)
T PRK13894 27 LLAALNDPKTVEIMLN-ADGKLWLERLGEPMRCIGTLRVAQAQAIIETIAGYHGKEVTRSKPILEGELPLDGSRFAGQLP 105 (320)
T ss_pred HHHHHCCCCCEEEEEC-CCCEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHHCCEECCCCCEEEEEECCCCEEEEEECC
T ss_conf 9997179996799986-999599994890585167689999999999999980987467896699990899889999878
Q ss_pred ---CCCEEEEECCCCCCCEEEHHHHHCCHHHCCCCCCEEEEEEECCCCCEEECCHH-HCCCEEEEECCCCCHHHHHHHHH
Q ss_conf ---98345442688888707658751281211467836898420578873211201-14846997078753447999999
Q gi|254780606|r 358 ---KRNAIGIELPNETRETVYLRQIIESRSFSHSKANLALCLGKTISGESVIADLA-NMPHILVAGTTGSGKSVAINTMI 433 (744)
Q Consensus 358 ---g~~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~l~~~~g~~~~g~~~~~dl~-~~PH~lvaG~TgsGKS~~l~~~i 433 (744)
....+.|..+... ...|.|++++..|..... .++.... .--.+||+|.||||||.|||+++
T Consensus 106 P~~~~~~~sIRk~~~~--~~tL~dlv~~G~~~~~~a-------------~~L~~~V~~r~nilI~G~TgsGKTTll~all 170 (320)
T PRK13894 106 PVVPAPTFAIRKKAVA--IFTLDQYVERGIMTAEQR-------------EAIIAAVRAHRNILVIGGTGSGKTTLVNAII 170 (320)
T ss_pred CCCCCCEEEEECCCCC--CCCHHHHHHCCCCCHHHH-------------HHHHHHHHCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 8789965999686899--999999987699999999-------------9999999728758998588865689999998
Q ss_pred HHHHHHCCHHHEEEEEE-CCCC
Q ss_conf 99998568011079997-2342
Q gi|254780606|r 434 MSLLYRLRPDECRMIMV-DPKM 454 (744)
Q Consensus 434 ~sl~~~~~p~~~~~~li-D~k~ 454 (744)
..+.+ +.|.+ |++.| |.-.
T Consensus 171 ~~i~~-~~p~e-RivtIED~~E 190 (320)
T PRK13894 171 NEMVI-QDPTE-RVFIIEDTGE 190 (320)
T ss_pred HHHCC-CCCCC-CEEEECCHHH
T ss_conf 63202-69520-1775258788
No 41
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.40 E-value=0.0037 Score=40.63 Aligned_cols=191 Identities=19% Similarity=0.344 Sum_probs=90.8
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHH
Q ss_conf 01148469970787534479999999999856801107999723421000125775200004444178768999999866
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREM 488 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em 488 (744)
+.+.+-++|.|.||||||+-|--+++..-+ -..-++.+.+|.++. |..+-..+.+||
T Consensus 62 i~~~~vvii~getGsGKTTqlP~~lle~g~---~~~g~I~~tQPRRlA--------------------ArsvA~RvAeel 118 (845)
T COG1643 62 IEQNQVVIIVGETGSGKTTQLPQFLLEEGL---GIAGKIGCTQPRRLA--------------------ARSVAERVAEEL 118 (845)
T ss_pred HHHCCEEEEECCCCCCHHHHHHHHHHHHHC---CCCCEEEECCCHHHH--------------------HHHHHHHHHHHH
T ss_conf 986978998679988758788999996001---668759965843899--------------------999999999983
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC-------------CCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 7699999980778679999988642026776-------------665432338679998445687675310358999999
Q gi|254780606|r 489 EERYRKMSHLSVRNIKSYNERISTMYGEKPQ-------------GCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQR 555 (744)
Q Consensus 489 ~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~-------------~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~ 555 (744)
... +...-+|.-|+...-..... .....+. -|=+|||||+.+-.... +..-.++.+
T Consensus 119 ~~~--------~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls--~ys~vIiDEaHERSl~t-DilLgllk~ 187 (845)
T COG1643 119 GEK--------LGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLS--GYSVVIIDEAHERSLNT-DILLGLLKD 187 (845)
T ss_pred CCC--------CCCEEEEEEEEECCCCCCCEEEEECCHHHHHHHHHCCCCC--CCCEEEEECHHHHHHHH-HHHHHHHHH
T ss_conf 898--------6765437999622678771468951479999984380204--58779970133556888-999999999
Q ss_pred HHHHHHCCEEEEEEEECCCCCCCCHHHHHH---------CCCCEEEEECCCHHHCC------HHCCCCCHHHHCCCCCEE
Q ss_conf 999642013589998516544441467885---------05630572036811100------326763168856898468
Q gi|254780606|r 556 LAQMARAAGIHLIMATQRPSVDVITGTIKA---------NFPIRISFQVTSKIDSR------TILGEHGAEQLLGRGDML 620 (744)
Q Consensus 556 la~~~ra~GihlilatQrp~~~vi~~~ik~---------n~~~ri~~~v~~~~dsr------~il~~~gae~l~g~gd~l 620 (744)
+.. .|---..+|+-+=.-+++-+...+.. -||.-|-|.-....|.+ .+++.. .-.+.||-|
T Consensus 188 ~~~-~rr~DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~---~~~~~GdIL 263 (845)
T COG1643 188 LLA-RRRDDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIH---LREGSGSIL 263 (845)
T ss_pred HHH-HCCCCCEEEEEECCCCHHHHHHHCCCCCEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH---CCCCCCCEE
T ss_conf 986-4688705999725358899997628998787558866447886577775136999999999996---368999889
Q ss_pred -EECCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf -646898438999343898899999999984
Q gi|254780606|r 621 -YMSGGGRIQRVHGPLVSDIEIEKVVQHLKK 650 (744)
Q Consensus 621 -~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 650 (744)
|++| ..||+++++.+.+
T Consensus 264 vFLpG-------------~~EI~~~~~~L~~ 281 (845)
T COG1643 264 VFLPG-------------QREIERTAEWLEK 281 (845)
T ss_pred EECCC-------------HHHHHHHHHHHHH
T ss_conf 97786-------------8999999999973
No 42
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.40 E-value=0.0022 Score=42.19 Aligned_cols=76 Identities=22% Similarity=0.255 Sum_probs=42.5
Q ss_pred CCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCC-CCH----HHHCCCCCEEEEC----CC-CCEEEE-EECCCCHHH
Q ss_conf 165444414678850563057203681110032676-316----8856898468646----89-843899-934389889
Q gi|254780606|r 572 QRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGE-HGA----EQLLGRGDMLYMS----GG-GRIQRV-HGPLVSDIE 640 (744)
Q Consensus 572 Qrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~-~ga----e~l~g~gd~l~~~----~~-~~~~r~-~~~~~~~~~ 640 (744)
..++.+.+.-+|-.-||-|||.+-.+ ++|-.|-. .|| ..-|.+-++|... ++ +.-.|+ .++=++.++
T Consensus 484 ~~~~~~~~g~lla~AfPDRIArrRg~--~gry~LanGrga~L~~~d~L~~~ewLvaadl~~~~~~~~~rI~lAa~i~~~~ 561 (812)
T PRK11664 484 GEVDSSLIAPLLALAFPDRIARRRGQ--DGRYQLANGMGAMLDADDALSRHEWLVAPLLLQGSASPDARILLALPLDIDE 561 (812)
T ss_pred CCCCHHHHHHHHHHHCHHHHHHHHCC--CCCEEEECCCEEEECCCCCCCCCCCEEEEEECCCCCCCHHEEEEECCCCHHH
T ss_conf 89986789999999785999886189--9867972687588788877778885899981367877522188626889999
Q ss_pred HHHHHHHHH
Q ss_conf 999999998
Q gi|254780606|r 641 IEKVVQHLK 649 (744)
Q Consensus 641 ~~~~~~~~~ 649 (744)
++......-
T Consensus 562 l~~~~~~~i 570 (812)
T PRK11664 562 LVQRCPQLV 570 (812)
T ss_pred HHHHHHHHC
T ss_conf 998867562
No 43
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.31 E-value=0.006 Score=39.20 Aligned_cols=145 Identities=17% Similarity=0.237 Sum_probs=72.1
Q ss_pred CCCCCEEEEEEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCE
Q ss_conf 46783689842057887321120114846997078753447999999999985680110799972342100012577520
Q gi|254780606|r 387 HSKANLALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHL 466 (744)
Q Consensus 387 ~~~~~l~~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~ 466 (744)
+..++|-...+.+.-.+-+.++ ..-.-++|-|.-.||||++|+++.+..++...- -++-.+ +...+..|+. +
T Consensus 4 ~~rHPll~~~~~~~V~Ndi~l~-~~~~~~iiTGpN~sGKSt~lk~i~l~~iLAq~G---~~vpa~-~~~~~~~~d~---i 75 (200)
T cd03280 4 EARHPLLPLQGEKVVPLDIQLG-ENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSG---LPIPAA-EGSSLPVFEN---I 75 (200)
T ss_pred CCCCCEEECCCCCEECCEEEEC-CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHC---CCEEEC-CCEECCCCCE---E
T ss_conf 7728859757895476258977-993399998898775099999999999999977---780011-0047266567---8
Q ss_pred EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC
Q ss_conf 00044441787689999998667699999980778679999988642026776665432338679998445687675310
Q gi|254780606|r 467 LTPVVTNPKKAVMALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG 546 (744)
Q Consensus 467 ~~~v~~~~~~~~~~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~ 546 (744)
++. +.+.+.....+-....||.+-..++.... ..-+|++||+.- -+..
T Consensus 76 ~~~-i~~~d~~~~~~S~F~~E~~~~~~il~~~~-----------------------------~~sLvliDE~~~--gTn~ 123 (200)
T cd03280 76 FAD-IGDEQSIEQSLSTFSSHMKNIARILQHAD-----------------------------PDSLVLLDELGS--GTDP 123 (200)
T ss_pred EEE-ECCCCCHHHHHHHHHHHHHHHHHHHHHCC-----------------------------CCCEEEECCCCC--CCCH
T ss_conf 888-46733666778799999999999998588-----------------------------888797556668--9887
Q ss_pred HHHH----HHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 3589----9999999964201358999851654
Q gi|254780606|r 547 KEIE----GAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 547 ~~~e----~~~~~la~~~ra~GihlilatQrp~ 575 (744)
.|-. ..+..|.+ .+.+.|++|-...
T Consensus 124 ~eg~~~a~a~l~~l~~----~~~~~i~tTH~~e 152 (200)
T cd03280 124 VEGAALAIAILEELLE----RGALVIATTHYGE 152 (200)
T ss_pred HHHHHHHHHHHHHHHH----CCCEEEEECCCHH
T ss_conf 8999999999999985----7997999897178
No 44
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.31 E-value=0.001 Score=44.52 Aligned_cols=83 Identities=22% Similarity=0.473 Sum_probs=52.4
Q ss_pred CEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHC---
Q ss_conf 67999844568767531035899999999964201358999851654444146788505630572036811100326---
Q gi|254780606|r 529 PYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTIL--- 605 (744)
Q Consensus 529 p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il--- 605 (744)
+|-|||+||...|. .+...++.++-..- +-..++||+|.+++ .++.. |+.-. .++-|+--+..+=+..|
T Consensus 125 ~~KiiIlDEad~lt----~~Aq~aLlk~lEe~-~~~~~fIl~t~~~~-~ii~t-I~SRC-~~i~F~~~s~~~i~~~L~~I 196 (337)
T PRK12402 125 DYKLILFDNAEALR----EDAQQALRRIMERY-SETCRFIFSTTQPS-KLIPP-IRSRC-LPLFFRPVPDDEIRSVLESI 196 (337)
T ss_pred CEEEEEEECCCCCC----HHHHHHHHHHHHCC-CCCEEEEEECCCCC-CCCHH-HHHHC-EEEECCCCCHHHHHHHHHHH
T ss_conf 80499970713179----99999999887408-87669987238644-47524-77624-45435898999999999999
Q ss_pred --------CCCCHHHH--CCCCCE
Q ss_conf --------76316885--689846
Q gi|254780606|r 606 --------GEHGAEQL--LGRGDM 619 (744)
Q Consensus 606 --------~~~gae~l--~g~gd~ 619 (744)
+..+.+.| ...|||
T Consensus 197 ~~~E~i~~~~~~l~~ia~~s~Gdl 220 (337)
T PRK12402 197 AAAEGVEISDDGLDLIAYYAEGDL 220 (337)
T ss_pred HHHCCCCCCHHHHHHHHHHCCCCH
T ss_conf 998499989999999999869989
No 45
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.26 E-value=0.002 Score=42.48 Aligned_cols=121 Identities=17% Similarity=0.217 Sum_probs=70.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69970787534479999999999856801107999723421000125775200004444178768999999866769999
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEERYRK 494 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r~~~ 494 (744)
++|-|.-.||||++|+++.+..++.+.= -+ +=.+...+..|+.+- + .+.+.+....-+-....||.+-...
T Consensus 2 ~iiTGpN~sGKSt~lk~i~l~~~laq~G---~~--vpa~~~~~~~~d~i~---~-~i~~~d~~~~~~S~F~~e~~~~~~i 72 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIG---SF--VPAESAELPVFDRIF---T-RIGASDSLAQGLSTFMVEMKETANI 72 (185)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHC---CC--EEECCCEEECCCEEE---E-EECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 8997999884899999999999999978---88--615771995031002---3-3564100215641899999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHH-HHHHHHCCEEEEEEEECC
Q ss_conf 9980778679999988642026776665432338679998445687675310358999999-999642013589998516
Q gi|254780606|r 495 MSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQR-LAQMARAAGIHLIMATQR 573 (744)
Q Consensus 495 ~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~-la~~~ra~GihlilatQr 573 (744)
+...+ ..-+|++||+.. -+...|-...... |-.+....|.+.|++|-.
T Consensus 73 l~~~~-----------------------------~~sLvliDEl~~--GT~~~eg~ala~aile~l~~~~~~~~iitTH~ 121 (185)
T smart00534 73 LKNAT-----------------------------ENSLVLLDELGR--GTSTYDGVAIAAAVLEYLLEKIGALTLFATHY 121 (185)
T ss_pred HHHCC-----------------------------CCEEEEECCCCC--CCCHHHHHHHHHHHHHHHHHCCCCEEEEEECH
T ss_conf 98389-----------------------------873763041136--88814789999999999996369759986043
Q ss_pred CC
Q ss_conf 54
Q gi|254780606|r 574 PS 575 (744)
Q Consensus 574 p~ 575 (744)
..
T Consensus 122 ~e 123 (185)
T smart00534 122 HE 123 (185)
T ss_pred HH
T ss_conf 78
No 46
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=97.24 E-value=0.0017 Score=42.95 Aligned_cols=113 Identities=26% Similarity=0.379 Sum_probs=65.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC--------------------CCEECCCC----------
Q ss_conf 484699707875344799999999998568011079997234--------------------21000125----------
Q gi|254780606|r 412 MPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK--------------------MLELSVYD---------- 461 (744)
Q Consensus 412 ~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k--------------------~~~~~~~~---------- 461 (744)
.=|++|.-.||||||.+-+--|+..+++..-. +.+++-|= ++.++.|+
T Consensus 85 G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a--~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~ 162 (851)
T COG1205 85 GRNVVVTTGTGSGKTESFLLPILDHLLRDPSA--RALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRA 162 (851)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCC--EEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH
T ss_conf 99889978998854589899999998308665--0899804377676699999999984787513544348896788899
Q ss_pred ---CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHH
Q ss_conf ---77520000444417876899999986676999999807786799999886420267766654323386799984456
Q gi|254780606|r 462 ---GIPHLLTPVVTNPKKAVMALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEM 538 (744)
Q Consensus 462 ---~~ph~~~~v~~~~~~~~~~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~ 538 (744)
+-||. ++||++.....| .|+-..|.-... .| -+||+||+
T Consensus 163 ~~~~pp~I---llTNpdMLh~~l------------------lr~~~~~~~~~~---------------~L--k~lVvDEl 204 (851)
T COG1205 163 IIRNPPDI---LLTNPDMLHYLL------------------LRNHDAWLWLLR---------------NL--KYLVVDEL 204 (851)
T ss_pred HHHCCCCE---EEECHHHHHHHH------------------HCCCCCHHHHHH---------------CC--CEEEEECC
T ss_conf 87389978---983889998986------------------368822788873---------------27--58998444
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHCCE
Q ss_conf 87675310358999999999642013
Q gi|254780606|r 539 ADLMMVAGKEIEGAIQRLAQMARAAG 564 (744)
Q Consensus 539 a~l~~~~~~~~e~~~~~la~~~ra~G 564 (744)
.-.--..+.++--.+-||-++.|..|
T Consensus 205 HtYrGv~GS~vA~llRRL~~~~~~~~ 230 (851)
T COG1205 205 HTYRGVQGSEVALLLRRLLRRLRRYG 230 (851)
T ss_pred EECCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 12156037889999999999972458
No 47
>PRK04328 hypothetical protein; Provisional
Probab=97.17 E-value=0.0088 Score=38.06 Aligned_cols=138 Identities=13% Similarity=0.225 Sum_probs=68.6
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC-----------CCEECCCCCCCCEEEEEEE---C-HH
Q ss_conf 1484699707875344799999999998568011079997234-----------2100012577520000444---4-17
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK-----------MLELSVYDGIPHLLTPVVT---N-PK 475 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k-----------~~~~~~~~~~ph~~~~v~~---~-~~ 475 (744)
+.=-.||+|.+|+|||.|-..++..-+.+ -+.+-++-++-. +.++..|.....+. +++ . ..
T Consensus 23 ~gs~~Lv~G~pGtGKT~la~qFl~~g~~~--GE~~lyis~eE~~~~l~~~~~~~G~d~~~~~~~g~l~--iid~~~~~~~ 98 (250)
T PRK04328 23 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEEHPVQVRRNMAQFGWDVRKYEEEGKFA--IVDAFTGGIG 98 (250)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHC--CCCEEEEEEECCHHHHHHHHHHCCCCHHHHHHCCCEE--EEECCCCCCC
T ss_conf 99699998289999899999999999876--9977999972799999999998099868986569779--9851233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 87689999998667699999980778679999988642026776665432338679998445687675310358999999
Q gi|254780606|r 476 KAVMALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQR 555 (744)
Q Consensus 476 ~~~~~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~ 555 (744)
.+....++...+. .++..+-..+...- +.. -+. .||||-+..|.+.........+.+
T Consensus 99 ~~~~~~~~~~~~~------------~~~~~~~~~l~~~i----~~~------~~~-rvVIDSit~l~~~~~~~~r~~l~~ 155 (250)
T PRK04328 99 EAAEREKYVVKDP------------DDVRELIDVLRQAI----RDI------GAK-RVVIDSVSTLYLTKPAVARSIVMQ 155 (250)
T ss_pred CCCHHHHHCCCCC------------CCHHHHHHHHHHHH----HHH------CCC-EEEEECCHHHHHCCHHHHHHHHHH
T ss_conf 2000001013685------------35999999999999----851------898-899937078774585889999999
Q ss_pred HHHHHHCCEEEEEEEECCCC
Q ss_conf 99964201358999851654
Q gi|254780606|r 556 LAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 556 la~~~ra~GihlilatQrp~ 575 (744)
|.+.-+..|+-.++.++.+.
T Consensus 156 l~~~l~~~g~Ttll~~e~~~ 175 (250)
T PRK04328 156 LKRVLAGLGCTSIFVSQVSV 175 (250)
T ss_pred HHHHHHHCCCEEEEEECCCC
T ss_conf 99999868986999971003
No 48
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.16 E-value=0.0095 Score=37.86 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=70.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46997078753447999999999985680110799972342100012577520000444417876899999986676999
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEERYR 493 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r~~ 493 (744)
.++|-|.-.||||++|+++.+..++.+.-- .|=-+..++..|+.+ ++ -+.+.+.....+-....||.+-..
T Consensus 32 ~~iiTGpN~sGKSt~lk~i~l~~ilaq~G~-----~vpA~~~~~~~~d~i---~~-~i~~~d~~~~~~StF~~e~~~~~~ 102 (218)
T cd03286 32 ILVLTGPNMGGKSTLLRTVCLAVIMAQMGM-----DVPAKSMRLSLVDRI---FT-RIGARDDIMKGESTFMVELSETAN 102 (218)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCC-----CEECCCCEEECCCEE---EE-EECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 899989998873899999999999998288-----430146477346648---99-745866143115069999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHH----HHHHHHHHHHHCCEEEEEE
Q ss_conf 999807786799999886420267766654323386799984456876753103589----9999999964201358999
Q gi|254780606|r 494 KMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIE----GAIQRLAQMARAAGIHLIM 569 (744)
Q Consensus 494 ~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e----~~~~~la~~~ra~Gihlil 569 (744)
.+...+ +.-+|++||+.. -+...|-. ..+..|+ ...+.+.|+
T Consensus 103 il~~~~-----------------------------~~sLvllDE~~~--GT~~~eg~ala~aile~L~---~~~~~~~i~ 148 (218)
T cd03286 103 ILRHAT-----------------------------PDSLVILDELGR--GTSTHDGYAIAHAVLEYLV---KKVKCLTLF 148 (218)
T ss_pred HHHHCC-----------------------------CCCCEECCCCCC--CCCCHHHHHHHHHHHHHHH---HCCCCEEEE
T ss_conf 998679-----------------------------985010255468--9981167999999999998---637976999
Q ss_pred EECCCC
Q ss_conf 851654
Q gi|254780606|r 570 ATQRPS 575 (744)
Q Consensus 570 atQrp~ 575 (744)
+|-...
T Consensus 149 tTH~~e 154 (218)
T cd03286 149 STHYHS 154 (218)
T ss_pred ECCCHH
T ss_conf 767289
No 49
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=97.16 E-value=0.00048 Score=46.72 Aligned_cols=69 Identities=20% Similarity=0.314 Sum_probs=48.3
Q ss_pred EEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCC-CC-----CHHHHHHCCCCEEEEECCCHHHCCH
Q ss_conf 79998445687675310358999999999642013589998516544-44-----1467885056305720368111003
Q gi|254780606|r 530 YIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSV-DV-----ITGTIKANFPIRISFQVTSKIDSRT 603 (744)
Q Consensus 530 ~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~-~v-----i~~~ik~n~~~ri~~~v~~~~dsr~ 603 (744)
.+++++|||+-+- .+. .+.++...+|+.||+++++.|-.+- +. -...|.+|+.++|.|++.+..+-+.
T Consensus 264 ~v~~~lDEf~nl~-----~ip-~l~~~ls~~Rs~Gi~~~~~~Qs~~Ql~~~YG~~~~~~i~~n~~~~i~~~~~d~~ta~~ 337 (384)
T cd01126 264 RVLFLLDEFPLLG-----KLE-TFEKAIAIMAGYGIRLLLIFQSLAQLEGTYGDAGASSFLSNCGVRLFFAVNDYETARY 337 (384)
T ss_pred CEEEEEECHHHCC-----CHH-HHHHHHHHHHCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHH
T ss_conf 5599986611017-----738-8999999874289199999954999998855617999996078499925899899999
Q ss_pred H
Q ss_conf 2
Q gi|254780606|r 604 I 604 (744)
Q Consensus 604 i 604 (744)
+
T Consensus 338 ~ 338 (384)
T cd01126 338 I 338 (384)
T ss_pred H
T ss_conf 9
No 50
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=97.14 E-value=0.0015 Score=43.36 Aligned_cols=222 Identities=13% Similarity=0.183 Sum_probs=111.9
Q ss_pred HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEE--EECH-HHHHHHHHHHH-
Q ss_conf 1148469970787534479999999999856801107999723421000125775200004--4441-78768999999-
Q gi|254780606|r 410 ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPV--VTNP-KKAVMALKWAV- 485 (744)
Q Consensus 410 ~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v--~~~~-~~~~~~l~~~~- 485 (744)
..||.+|+.|-||.|||..++-..- .|.+. .|... ..+|-+.... --|. .-....|..+.
T Consensus 59 ~Rmp~lLlvGdsnnGKT~Iv~rF~~----~hp~~------~d~~~------~~~PVl~vq~P~~p~~~~lY~~IL~~l~a 122 (302)
T pfam05621 59 QRMPNLLLVGPTNNGKSMIVEKFRR----AHPAG------SDADQ------EHIPVLVVQMPSEPSVIRFYVALLAAMGA 122 (302)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHH----HCCCC------CCCCC------CCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 6887558870798878999999999----67998------78666------70218999769998868999999998378
Q ss_pred --------HHHHHH-HHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf --------866769-99999807786799999886420267766654323386799984456876753103589999999
Q gi|254780606|r 486 --------REMEER-YRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRL 556 (744)
Q Consensus 486 --------~em~~r-~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~l 556 (744)
.+++.+ ..+|...+ .-++||||+.-++.....+-...+.-|
T Consensus 123 P~~~~~~~~~~~~~~~~ll~~~~------------------------------vrmLIIDEiHnlL~Gs~~~qr~~ln~L 172 (302)
T pfam05621 123 PLRPRPRLPEMEQLALALLRKVG------------------------------VRMLVIDELHNVLAGNSVNRREFLNLL 172 (302)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC------------------------------CCEEEEECHHHHCCCCHHHHHHHHHHH
T ss_conf 77888778999999999999749------------------------------878998543656048688999999999
Q ss_pred HHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCCCCEEEECCCCCEEEEEECCC
Q ss_conf 99642013589998516544441467885056305720368111003267631688568984686468984389993438
Q gi|254780606|r 557 AQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDMLYMSGGGRIQRVHGPLV 636 (744)
Q Consensus 557 a~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~gd~l~~~~~~~~~r~~~~~~ 636 (744)
-.+|..+-|-+|++--+=-.+ +|+...+..|| =+...++. |=
T Consensus 173 K~L~Nel~IpiV~vGt~eA~~--------------ai~tD~QlasR--------------F~~~~Lp~----------W~ 214 (302)
T pfam05621 173 RFLGNELRIPLVGVGTRDAYL--------------AIRSDDQLENR--------------FEPMLLPP----------WE 214 (302)
T ss_pred HHHHHCCCCCEEEECCHHHHH--------------HHHCCHHHHHH--------------CCCCCCCC----------CC
T ss_conf 998636587869953199999--------------97068888850--------------58611688----------88
Q ss_pred CHHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHH
Q ss_conf 988999999999840---88753111124555544445667777777660389999999974986232200000100789
Q gi|254780606|r 637 SDIEIEKVVQHLKKQ---GCPEYLNTVTTDTDTDKDGNNFDSEEKKERSNLYAKAVDLVIDNQRCSTSFIQRRLQIGYNR 713 (744)
Q Consensus 637 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~qr~~~~g~~r 713 (744)
-|+|-.+++.-+..- .+++++..-......- ...+| ...+--.|+.+|+...+++|+--++
T Consensus 215 ~d~ef~~LL~sfe~~LPL~~~S~L~~~~~a~~I~---~~SeG-~iGei~~Ll~~aA~~AI~sG~E~It------------ 278 (302)
T pfam05621 215 ANDDCCSLLASFAASLPLRRPSPIATLDMARYLL---TRSEG-TIGELAHLLMAAAIAAVESGEEAIN------------ 278 (302)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH---HHCCC-CHHHHHHHHHHHHHHHHHCCCCCCC------------
T ss_conf 9808999999999868887776888899999999---98599-2879999999999999847871008------------
Q ss_pred HHHHHHHHHHCCCCCHHHCCCC
Q ss_conf 9999999998797570216886
Q gi|254780606|r 714 AALLVERMEQEGLVSEADHVGK 735 (744)
Q Consensus 714 a~~~~~~~e~~g~~~~~~~~~~ 735 (744)
.+.+++.++|+|.++-+.
T Consensus 279 ----~~~l~~~~~i~ps~r~r~ 296 (302)
T pfam05621 279 ----HRTLSMADYIGPSERRRQ 296 (302)
T ss_pred ----HHHHHHCCCCCCCCCCCH
T ss_conf ----999966798683334306
No 51
>KOG0926 consensus
Probab=97.13 E-value=0.0021 Score=42.31 Aligned_cols=243 Identities=20% Similarity=0.317 Sum_probs=118.7
Q ss_pred CCCCCEEEHHHHHCCHHHCCCCCCEEEEEEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEE
Q ss_conf 88887076587512812114678368984205788732112011484699707875344799999999998568011079
Q gi|254780606|r 368 NETRETVYLRQIIESRSFSHSKANLALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRM 447 (744)
Q Consensus 368 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~ 447 (744)
+..|+++|. .+-.+...+++...|||..- -.-++.-+...|-++|+|.|||||++-|--.+.--=|. +++
T Consensus 232 ~~~~~a~yV-~V~R~~EIQ~sR~~LPI~ae----Eq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~-s~~---- 301 (1172)
T KOG0926 232 ACRRKAFYV-IVSRPAEIQESRLDLPIVAE----EQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFA-SEQ---- 301 (1172)
T ss_pred CCCCCCEEE-EECCCHHHHHHHHCCCHHHH----HHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHCCCC-CCC----
T ss_conf 545530799-84485788887751763678----99999986228749995488888644341899871347-766----
Q ss_pred EEECCCCCEECCCCCCCCEEEEEEECHHHHHHH--HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-----CCCC--
Q ss_conf 997234210001257752000044441787689--9999986676999999807786799999886420-----2677--
Q gi|254780606|r 448 IMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMA--LKWAVREMEERYRKMSHLSVRNIKSYNERISTMY-----GEKP-- 518 (744)
Q Consensus 448 ~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~--l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~-----~~~~-- 518 (744)
+.. +.+++ ||.+...+.. -+.+..||-. + ..-.+|--|+.... ..+.
T Consensus 302 ------------~~~-~gmIG--ITqPRRVAaiamAkRVa~EL~~-------~--~~eVsYqIRfd~ti~e~T~IkFMTD 357 (1172)
T KOG0926 302 ------------SSS-PGMIG--ITQPRRVAAIAMAKRVAFELGV-------L--GSEVSYQIRFDGTIGEDTSIKFMTD 357 (1172)
T ss_pred ------------CCC-CCEEE--ECCCHHHHHHHHHHHHHHHHCC-------C--CCCEEEEEEECCCCCCCCEEEEECC
T ss_conf ------------799-87054--0572278999999999998525-------7--6411489985365688740477402
Q ss_pred ----CCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCC----------EEEEEEEECCCCCC-------
Q ss_conf ----666543233867999844568767531035899999999964201----------35899985165444-------
Q gi|254780606|r 519 ----QGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAA----------GIHLIMATQRPSVD------- 577 (744)
Q Consensus 519 ----~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~----------GihlilatQrp~~~------- 577 (744)
+....|+----|=||||||-.+-.+. .+-.-+++.||..+-+-. -.-+.-||=|-+ |
T Consensus 358 GVLLrEi~~DflL~kYSvIIlDEAHERSvn-TDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVs-DFtenk~L 435 (1172)
T KOG0926 358 GVLLREIENDFLLTKYSVIILDEAHERSVN-TDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVS-DFTENKRL 435 (1172)
T ss_pred HHHHHHHHHHHHHHHCEEEEECHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEC-CCCCCCEE
T ss_conf 388999887675542015785125430312-7899999988778889976641356761699974147711-02467542
Q ss_pred --CCHHHHH---HCCCCEEEEECCCHHHCCHHCCCCCHHHHCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf --4146788---50563057203681110032676316885689846864689843899934389889999999998408
Q gi|254780606|r 578 --VITGTIK---ANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDMLYMSGGGRIQRVHGPLVSDIEIEKVVQHLKKQG 652 (744)
Q Consensus 578 --vi~~~ik---~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~gd~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 652 (744)
+++.+|| -+||.-|-|.-.+..|.- + .|..-.-+=+ --++.|+=++.+-| ..||+.+|..++...
T Consensus 436 Fpi~pPlikVdARQfPVsIHF~krT~~DYi---~--eAfrKtc~IH-~kLP~G~ILVFvTG----QqEV~qL~~kLRK~~ 505 (1172)
T KOG0926 436 FPIPPPLIKVDARQFPVSIHFNKRTPDDYI---A--EAFRKTCKIH-KKLPPGGILVFVTG----QQEVDQLCEKLRKRF 505 (1172)
T ss_pred CCCCCCEEEEECCCCCEEEEECCCCCCHHH---H--HHHHHHHHHH-HCCCCCCEEEEEEC----HHHHHHHHHHHHHHC
T ss_conf 478996055304528568873267984178---9--9999999886-10899827999807----589999999998648
Q ss_pred CCCC
Q ss_conf 8753
Q gi|254780606|r 653 CPEY 656 (744)
Q Consensus 653 ~~~~ 656 (744)
.-.|
T Consensus 506 p~~f 509 (1172)
T KOG0926 506 PESF 509 (1172)
T ss_pred CCCC
T ss_conf 4102
No 52
>pfam00488 MutS_V MutS domain V. This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam01624, pfam05188, pfam05192 and pfam05190. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with domain V of Thermus aquaticus MutS, which contains a Walker A motif, and is structurally similar to the ATPase domain of ABC transporters.
Probab=97.10 E-value=0.0081 Score=38.30 Aligned_cols=132 Identities=16% Similarity=0.169 Sum_probs=74.4
Q ss_pred CCEEECCHHHC---CC-EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHH
Q ss_conf 87321120114---84-699707875344799999999998568011079997234210001257752000044441787
Q gi|254780606|r 402 GESVIADLANM---PH-ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKA 477 (744)
Q Consensus 402 g~~~~~dl~~~---PH-~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~ 477 (744)
.++|--|+.=. ++ ++|-|.-.||||++|+++-+..++.+.- ..|-.+..++..|+.+ ++ -+.+.+..
T Consensus 28 ~~~VpNdi~l~~~~~~~~iiTGpN~sGKSt~Lk~igl~~~lAq~G-----~~VPA~~a~~~~~d~I---~~-~i~~~dsl 98 (234)
T pfam00488 28 ENFVPNDVSLGKERSRILLITGPNMGGKSTYLRQVALIVIMAQIG-----SFVPAESARIGIVDRI---FT-RIGASDDL 98 (234)
T ss_pred CCEECCEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHC-----CCEEECCEEEECCCEE---EE-EECCCCHH
T ss_conf 976876589779961699997887776199999999999999836-----8742220599636559---99-85675334
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHH----HHH
Q ss_conf 6899999986676999999807786799999886420267766654323386799984456876753103589----999
Q gi|254780606|r 478 VMALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIE----GAI 553 (744)
Q Consensus 478 ~~~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e----~~~ 553 (744)
..-+-....||.+-...+..... .-+|++||+.. -+...|-. ..+
T Consensus 99 ~~~~StF~~e~~~~~~il~~~~~-----------------------------~sLvliDEl~~--GT~~~eg~al~~ail 147 (234)
T pfam00488 99 ASGRSTFMVEMLETANILHNATD-----------------------------KSLVILDELGR--GTSTYDGLAIAWAVA 147 (234)
T ss_pred HCCCCHHHHHHHHHHHHHHHCCC-----------------------------CCEECCCCCCC--CCCHHHHHHHHHHHH
T ss_conf 46611799999999999973887-----------------------------73220142458--998346799999999
Q ss_pred HHHHHHHHCCEEEEEEEECCCCC
Q ss_conf 99999642013589998516544
Q gi|254780606|r 554 QRLAQMARAAGIHLIMATQRPSV 576 (744)
Q Consensus 554 ~~la~~~ra~GihlilatQrp~~ 576 (744)
..|.++ .|...|++|-....
T Consensus 148 e~L~~~---~~~~~i~tTH~~~L 167 (234)
T pfam00488 148 EHLAEK---IRARTLFATHYHEL 167 (234)
T ss_pred HHHHHH---CCCEEEEEECHHHH
T ss_conf 999973---59779997135779
No 53
>PRK10436 hypothetical protein; Provisional
Probab=97.08 E-value=0.00089 Score=44.91 Aligned_cols=145 Identities=23% Similarity=0.279 Sum_probs=73.6
Q ss_pred CCCCEEEEEEEECCCEEEEEEECC---------CCC----CHHHHHHHHH-HHHHHHCCCCCEEE-EECCCCEEEEE---
Q ss_conf 355138986764892589997548---------886----3999985999-99987147763277-51898345442---
Q gi|254780606|r 304 FGIKGEIINVNPGPVVTLYEFEPA---------PGI----KSSRVIGLAD-DIARSMSSLSARVA-VIPKRNAIGIE--- 365 (744)
Q Consensus 304 ~~~~~~~~~~~~gp~~~~~~~~~~---------~g~----~~~~~~~~~~-d~~~~~~~~~~~~~-~~pg~~~~~~~--- 365 (744)
+.-+|.=+++.+...-++++++-. +.- =++||.-+++ |++-.-...+-|+. ...|+ .+-+.
T Consensus 93 i~~~ASDIHieP~~~~~~Ir~RiDG~L~~~~~l~~~~~~~l~sriK~la~ldiae~r~PQdGr~~~~~~~~-~id~Rvst 171 (461)
T PRK10436 93 LQKRASDIHFEPAQNHYRIRLRIDGVLHPLPDPSPETGAALTARLKVLGNLDIAEHRLPQDGQFTVELAGN-AYSFRIAT 171 (461)
T ss_pred HHCCCCEEEEEECCCCEEEEEEECCEEEEECCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEEECCE-EEEEEEEE
T ss_conf 97599658998469818999986899988515898789999999999749981205568778279988996-89999993
Q ss_pred CCCCCCCEEEHHHHHCCHHHCCCCCCEEEEEEECCCCCEEECCHHHCCCE--EEEECCCCCHHHHHHHHHHHHHHHCCHH
Q ss_conf 68888870765875128121146783689842057887321120114846--9970787534479999999999856801
Q gi|254780606|r 366 LPNETRETVYLRQIIESRSFSHSKANLALCLGKTISGESVIADLANMPHI--LVAGTTGSGKSVAINTMIMSLLYRLRPD 443 (744)
Q Consensus 366 ~p~~~~~~v~~~~~~~~~~~~~~~~~l~~~~g~~~~g~~~~~dl~~~PH~--lvaG~TgsGKS~~l~~~i~sl~~~~~p~ 443 (744)
+|...-+.|.||=+- ...+.. .|. -||.+-.-.-.+..+.+.||. ||.|-||||||+.|.+++-.| ++++
T Consensus 172 ~Pt~~GE~ivlRlL~-~~~~~~---~L~-~LG~~~~~~~~~~~~~~~p~GliLvtGPTGSGKTTTLya~L~~l---~~~~ 243 (461)
T PRK10436 172 LPCRGGEKVVLRLLQ-QVQQTL---DLE-TLGMTPAQLAQFRQALQQPQGLVLVTGPTGSGKTVTLYSALQTL---NTAQ 243 (461)
T ss_pred CCCCCCCEEEEEEEC-CCCCCC---CHH-HHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCC
T ss_conf 346788778999524-665668---887-84889999999999983899779997899995699999999743---4677
Q ss_pred HEEEEEE-CCCCCEEC
Q ss_conf 1079997-23421000
Q gi|254780606|r 444 ECRMIMV-DPKMLELS 458 (744)
Q Consensus 444 ~~~~~li-D~k~~~~~ 458 (744)
.+++-| ||=...+.
T Consensus 244 -~~I~TiEDPVE~~l~ 258 (461)
T PRK10436 244 -INICSVEDPVEIPLA 258 (461)
T ss_pred -CEEEEEECCCCCCCC
T ss_conf -169996077435546
No 54
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.06 E-value=0.00048 Score=46.72 Aligned_cols=35 Identities=34% Similarity=0.631 Sum_probs=28.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC
Q ss_conf 4846997078753447999999999985680110799972
Q gi|254780606|r 412 MPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD 451 (744)
Q Consensus 412 ~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD 451 (744)
--.+||+|.||||||+|+|+++..+ |.+-|++.|-
T Consensus 162 r~NIlIsGgTGSGKTTllnALl~~I-----P~~eRIvtIE 196 (343)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAI-----PPQERLITIE 196 (343)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCC-----CCCCCEEEEC
T ss_conf 9889998889861999999999628-----9655279961
No 55
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.04 E-value=0.0055 Score=39.47 Aligned_cols=121 Identities=13% Similarity=0.222 Sum_probs=68.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69970787534479999999999856801107999723421000125775200004444178768999999866769999
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEERYRK 494 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r~~~ 494 (744)
+||.|.-.||||++|+++-+..++...-- ++ =-+..++..|+.+ ++ .+.+.+.....+-....||.+-..+
T Consensus 32 ~iiTGpN~gGKSt~lkti~l~~ilaq~G~---~v--pa~~~~~~~~~~i---~~-~i~~~d~~~~~~StF~~E~~~~~~i 102 (213)
T cd03281 32 MVITGPNSSGKSVYLKQVALIVFLAHIGS---FV--PADSATIGLVDKI---FT-RMSSRESVSSGQSAFMIDLYQVSKA 102 (213)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHCC---CE--EECCEEEECCCCE---EE-EECCHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99989998765999999999999998588---57--6740399721223---76-7676434441325899999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHH----HHHHHHHHHCCEEEEEEE
Q ss_conf 9980778679999988642026776665432338679998445687675310358999----999999642013589998
Q gi|254780606|r 495 MSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGA----IQRLAQMARAAGIHLIMA 570 (744)
Q Consensus 495 ~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~----~~~la~~~ra~Gihlila 570 (744)
+.... +.-+|++||+.. -+...|-... +..|..++- .--+.|++
T Consensus 103 l~~~~-----------------------------~~sLvliDEl~~--GT~~~eg~ala~a~le~l~~~~~-~~~~~~~t 150 (213)
T cd03281 103 LRLAT-----------------------------RRSLVLIDEFGK--GTDTEDGAGLLIATIEHLLKRGP-ECPRVIVS 150 (213)
T ss_pred HHHCC-----------------------------CCCEEEEEECCC--CCCHHHHHHHHHHHHHHHHHCCC-CCCEEEEE
T ss_conf 98588-----------------------------886587731347--88835679999999999996588-76649998
Q ss_pred ECCCCC
Q ss_conf 516544
Q gi|254780606|r 571 TQRPSV 576 (744)
Q Consensus 571 tQrp~~ 576 (744)
|.....
T Consensus 151 TH~~~L 156 (213)
T cd03281 151 THFHEL 156 (213)
T ss_pred CCHHHH
T ss_conf 972787
No 56
>KOG2035 consensus
Probab=97.02 E-value=0.032 Score=34.26 Aligned_cols=154 Identities=22% Similarity=0.381 Sum_probs=87.7
Q ss_pred HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEE----CCC-CCEECCCCCCCCEEEEEEECHHHHHHHHHHH
Q ss_conf 11484699707875344799999999998568011079997----234-2100012577520000444417876899999
Q gi|254780606|r 410 ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMV----DPK-MLELSVYDGIPHLLTPVVTNPKKAVMALKWA 484 (744)
Q Consensus 410 ~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~li----D~k-~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~ 484 (744)
..+||+|+.|-.|+||-+-+.+++-.| |-..-+.+++-.- +-| ..|.+.....-|+-. ++..+-.--+.+
T Consensus 32 ~d~PHll~yGPSGaGKKTrimclL~el-YG~gveklki~~~t~~tpS~kklEistvsS~yHlEi----tPSDaG~~DRvV 106 (351)
T KOG2035 32 GDFPHLLVYGPSGAGKKTRIMCLLREL-YGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEI----TPSDAGNYDRVV 106 (351)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHH-HCCCCHHEEEEEEEEECCCCCEEEEEEECCCCEEEE----CHHHCCCCCHHH
T ss_conf 778707888889887211189999988-578724505666788648886379999425651774----734337511799
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCE
Q ss_conf 98667699999980778679999988642026776665432338679998445687675310358999999999642013
Q gi|254780606|r 485 VREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAG 564 (744)
Q Consensus 485 ~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~G 564 (744)
+.||-. .|+... -|+ .+ ..-+|-||||-|...|.. +...++-|-- ---+.-
T Consensus 107 iQellK---evAQt~--qie-~~------------------~qr~fKvvvi~ead~LT~----dAQ~aLRRTM-EkYs~~ 157 (351)
T KOG2035 107 IQELLK---EVAQTQ--QIE-TQ------------------GQRPFKVVVINEADELTR----DAQHALRRTM-EKYSSN 157 (351)
T ss_pred HHHHHH---HHHHHC--CHH-HC------------------CCCCEEEEEEECHHHHHH----HHHHHHHHHH-HHHHCC
T ss_conf 999999---987414--133-32------------------666548999803576508----8999999999-998607
Q ss_pred EEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCC
Q ss_conf 58999851654444146788505630572036811100
Q gi|254780606|r 565 IHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSR 602 (744)
Q Consensus 565 ihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr 602 (744)
++|||+-.--| .+|.. ||.-. +..||.-..|+.
T Consensus 158 ~RlIl~cns~S-riIep-IrSRC---l~iRvpaps~ee 190 (351)
T KOG2035 158 CRLILVCNSTS-RIIEP-IRSRC---LFIRVPAPSDEE 190 (351)
T ss_pred CEEEEEECCCC-CCHHH-HHHHE---EEEECCCCCHHH
T ss_conf 16999926743-02267-76220---587678998789
No 57
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.94 E-value=0.0011 Score=44.36 Aligned_cols=39 Identities=33% Similarity=0.620 Sum_probs=28.2
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEE-CCCC
Q ss_conf 1484699707875344799999999998568011079997-2342
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMV-DPKM 454 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~li-D~k~ 454 (744)
..-.+||+|.||||||.+|++++..+ |.+.+++.| |+-.
T Consensus 24 ~~~nIlIsG~tGSGKTTll~al~~~i-----~~~~rivtiEd~~E 63 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFI-----PPDERIITIEDTAE 63 (186)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHC-----CCCCCEEEECCCHH
T ss_conf 59989998999998999999999613-----34564598415354
No 58
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.93 E-value=0.0021 Score=42.33 Aligned_cols=183 Identities=14% Similarity=0.257 Sum_probs=84.5
Q ss_pred CCCCEEEEEEECCCCCEEECCHHH--CCCEEEEECCCCCHHHHHHHHHHHHH----------HHCCHHHEEEEEECCCCC
Q ss_conf 678368984205788732112011--48469970787534479999999999----------856801107999723421
Q gi|254780606|r 388 SKANLALCLGKTISGESVIADLAN--MPHILVAGTTGSGKSVAINTMIMSLL----------YRLRPDECRMIMVDPKML 455 (744)
Q Consensus 388 ~~~~l~~~~g~~~~g~~~~~dl~~--~PH~lvaG~TgsGKS~~l~~~i~sl~----------~~~~p~~~~~~liD~k~~ 455 (744)
..++++-.+|.+.--.-.+..+.. .-|+||.|--|.|||++.+++ ..|| |.+.|+.=.++--+.. .
T Consensus 7 ~~fPf~aIvGQe~~k~aLll~av~p~iGgVLi~G~~GtgKStlvRal-a~lLP~i~~v~~~~f~~~p~~p~~~~~~~~-~ 84 (347)
T CHL00081 7 PVFPFTAIVGQEEMKLALLLNVIDPKIGGVMIMGDRGTGKSTTIRAL-VDLLPEIEVVKNDPFNSDPRDPDLMSDEVR-E 84 (347)
T ss_pred CCCCHHHHCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHH-HHHCCCCEEECCCCCCCCCCCCCCCCHHHH-H
T ss_conf 88984065384999999999825788786998789987499999999-985787422068876789898100242666-5
Q ss_pred EECCCCCCC--CEEEEEEECH-----HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 000125775--2000044441-----787689999998667699999980778679999988642026776665432338
Q gi|254780606|r 456 ELSVYDGIP--HLLTPVVTNP-----KKAVMALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPM 528 (744)
Q Consensus 456 ~~~~~~~~p--h~~~~v~~~~-----~~~~~~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~ 528 (744)
.+..-+.++ ....++++-+ +.....++- ++ .+. .|. ..+..+. +..-
T Consensus 85 ~~~~~~~~~~~~~~~p~v~lPlgaTEDrv~GslDi-----e~--al~--~G~--------------~~f~pGl---La~A 138 (347)
T CHL00081 85 RIRNGEKIPTKKIKIPMVDLPLGATEDRVCGTIDI-----EK--ALT--EGV--------------KAFEPGL---LAKA 138 (347)
T ss_pred HHCCCCCCCCEECCCCEEECCCCCCCCEECCCHHH-----HH--HHH--CCC--------------CCCCCCH---HHHC
T ss_conf 43146667521146862536888852301140009-----98--984--587--------------1156531---2220
Q ss_pred CEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHH--------CCEE---EEEEEECCCCCCCCHHHHHHCCCCEEEEECCC
Q ss_conf 679998445687675310358999999999642--------0135---89998516544441467885056305720368
Q gi|254780606|r 529 PYIVIIVDEMADLMMVAGKEIEGAIQRLAQMAR--------AAGI---HLIMATQRPSVDVITGTIKANFPIRISFQVTS 597 (744)
Q Consensus 529 p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~r--------a~Gi---hlilatQrp~~~vi~~~ik~n~~~ri~~~v~~ 597 (744)
-+=|+.|||.+-| .+.+.+.|..-+..|. +.-. ++++|||.|..+-+..++-+-|...+...-..
T Consensus 139 ~rGiLyvDEINll----~d~~v~~LLda~a~G~~~VEReG~S~~~Pa~F~liaT~NPeEgeLrp~llDRF~l~v~v~~~~ 214 (347)
T CHL00081 139 NRGILYVDEVNLL----DDHLVDILLDSAASGWNTVEREGISIRHPARFVLIGSGNPEEGELRPQLLDRFGMHAEIRTVK 214 (347)
T ss_pred CCCEEEEEHHHHH----HHHHHHHHHHHHHCCEEEECCCCEEECCCCCEEEEECCCCCCCCCCHHHHHHEEEEEECCCCC
T ss_conf 3885886145432----379999999998558089804642330575006885578655674888882632267458878
Q ss_pred HHHCC
Q ss_conf 11100
Q gi|254780606|r 598 KIDSR 602 (744)
Q Consensus 598 ~~dsr 602 (744)
..+.|
T Consensus 215 ~~e~R 219 (347)
T CHL00081 215 DPELR 219 (347)
T ss_pred CHHHH
T ss_conf 98999
No 59
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.92 E-value=0.0029 Score=41.35 Aligned_cols=152 Identities=18% Similarity=0.258 Sum_probs=72.8
Q ss_pred ECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCC---CE------------ECCCCCCCCEEEEE
Q ss_conf 1120114846997078753447999999999985680110799972342---10------------00125775200004
Q gi|254780606|r 406 IADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKM---LE------------LSVYDGIPHLLTPV 470 (744)
Q Consensus 406 ~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~---~~------------~~~~~~~ph~~~~v 470 (744)
-+.+.+.-.+-|-|.+|||||++|| +|.+| -+-+...+.+.-.|... -+ |-.|+-+|.+
T Consensus 25 ~l~i~~Ge~vaI~GpSGSGKSTLLn-iig~l-d~pt~G~v~i~g~~~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~l---- 98 (226)
T COG1136 25 NLEIEAGEFVAIVGPSGSGKSTLLN-LLGGL-DKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDL---- 98 (226)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHH-HHHCC-CCCCCCEEEECCEECCCCCHHHHHHHHHHHEEEECCCCCCCCCC----
T ss_conf 5887499899998999998999999-99646-67888469999888675898899999777489987567778988----
Q ss_pred EECHHHHHHHHHH--H-HHHHHHHHHH-HHHCCCCCHHH----------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHH
Q ss_conf 4441787689999--9-9866769999-99807786799----------9998864202677666543233867999844
Q gi|254780606|r 471 VTNPKKAVMALKW--A-VREMEERYRK-MSHLSVRNIKS----------YNERISTMYGEKPQGCGDDMRPMPYIVIIVD 536 (744)
Q Consensus 471 ~~~~~~~~~~l~~--~-~~em~~r~~~-~~~~~~~~i~~----------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviD 536 (744)
|-.+...-.+.. . ..++.++... +...|..+... =.+|++..+.-. .-|.|++.-+
T Consensus 99 -tv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~~LSGGqqQRVAIARAL~---------~~P~iilADE 168 (226)
T COG1136 99 -TVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI---------NNPKIILADE 168 (226)
T ss_pred -CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCHHCCHHHHHHHHHHHHHH---------CCCCEEEEEC
T ss_conf -899999869987478736799999999986698123235881226979999999999982---------4998699607
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCC
Q ss_conf 5687675310358999999999642013589998516544
Q gi|254780606|r 537 EMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSV 576 (744)
Q Consensus 537 E~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~ 576 (744)
.-..|-....+++... |.+..+..|.-+|++|-.|..
T Consensus 169 PTgnLD~~t~~~V~~l---l~~~~~~~g~tii~VTHD~~l 205 (226)
T COG1136 169 PTGNLDSKTAKEVLEL---LRELNKERGKTIIMVTHDPEL 205 (226)
T ss_pred CCCCCCHHHHHHHHHH---HHHHHHHCCCEEEEECCCHHH
T ss_conf 6665886789999999---999987469899999089899
No 60
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0012 Score=44.07 Aligned_cols=158 Identities=16% Similarity=0.270 Sum_probs=69.3
Q ss_pred CC-CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHH
Q ss_conf 48-46997078753447999999999985680110799972342100012577520000444417876899999986676
Q gi|254780606|r 412 MP-HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEE 490 (744)
Q Consensus 412 ~P-H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~ 490 (744)
+| +++|.|.||+|||+.++-++--| ...++... .+-|++- ....+..+...+. ...-
T Consensus 41 ~p~n~~iyG~~GTGKT~~~~~v~~~l-~~~~~~~~-~~yINc~----------------~~~t~~~i~~~i~---~~~~- 98 (366)
T COG1474 41 RPSNIIIYGPTGTGKTATVKFVMEEL-EESSANVE-VVYINCL----------------ELRTPYQVLSKIL---NKLG- 98 (366)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH-HHHCCCCC-EEEEEEE----------------ECCCHHHHHHHHH---HHHC-
T ss_conf 98607998899987328999999999-73315675-7999513----------------0787879999999---9826-
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEE
Q ss_conf 99999980778679999988642026776665432338679998445687675310358999999999642013589998
Q gi|254780606|r 491 RYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMA 570 (744)
Q Consensus 491 r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihlila 570 (744)
-.-..|......|+........ .--++|||.||+.-|....+ ++--.|.|+.... ...+-+|.-
T Consensus 99 ---~~p~~g~~~~~~~~~l~~~~~~-----------~~~~~IvvLDEid~L~~~~~-~~LY~L~r~~~~~-~~~v~vi~i 162 (366)
T COG1474 99 ---KVPLTGDSSLEILKRLYDNLSK-----------KGKTVIVILDEVDALVDKDG-EVLYSLLRAPGEN-KVKVSIIAV 162 (366)
T ss_pred ---CCCCCCCCHHHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHCCCC-CHHHHEECCCCCC-CEEEEEEEE
T ss_conf ---8997676326899999997774-----------18759999764765415464-1455111247767-537999997
Q ss_pred ECCCC-CCCCHHHHHHCCC-CEEEEECCCHHHCCHHCCC
Q ss_conf 51654-4441467885056-3057203681110032676
Q gi|254780606|r 571 TQRPS-VDVITGTIKANFP-IRISFQVTSKIDSRTILGE 607 (744)
Q Consensus 571 tQrp~-~~vi~~~ik~n~~-~ri~~~v~~~~dsr~il~~ 607 (744)
+---. .+.+...|+..+. .+|-|.-=+...=+.||..
T Consensus 163 ~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~ 201 (366)
T COG1474 163 SNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRE 201 (366)
T ss_pred ECCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHH
T ss_conf 354889998756676506876355289898999999999
No 61
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.92 E-value=0.0091 Score=37.97 Aligned_cols=119 Identities=17% Similarity=0.177 Sum_probs=68.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69970787534479999999999856801107999723421000125775200004444178768999999866769999
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEERYRK 494 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r~~~ 494 (744)
++|-|.-.||||++|+++-+..++.+.- ..|-.+..++..|+. +++ .+.+.+.....+-....||.+-...
T Consensus 33 ~iiTGpN~sGKSt~lk~i~l~~~laq~G-----~~vpa~~~~~~~~d~---i~t-~i~~~d~~~~~~StF~~e~~~~~~i 103 (222)
T cd03285 33 LIITGPNMGGKSTYIRQIGVIVLMAQIG-----CFVPCDSADIPIVDC---ILA-RVGASDSQLKGVSTFMAEMLETAAI 103 (222)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHC-----CCEEEEEEEEECCCE---EEE-EECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9998999887189999999999999868-----754632389952764---999-9889971003352899999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHH----HHHHHHHHHHHCCEEEEEEE
Q ss_conf 99807786799999886420267766654323386799984456876753103589----99999999642013589998
Q gi|254780606|r 495 MSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIE----GAIQRLAQMARAAGIHLIMA 570 (744)
Q Consensus 495 ~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e----~~~~~la~~~ra~Gihlila 570 (744)
+.... +.-+|++|||.. -+...+-. ..+..|+ +..+-+.|++
T Consensus 104 l~~~~-----------------------------~~sLvliDElg~--GT~~~eg~aia~aile~L~---~~~~~~~i~t 149 (222)
T cd03285 104 LKSAT-----------------------------ENSLIIIDELGR--GTSTYDGFGLAWAIAEYIA---TQIKCFCLFA 149 (222)
T ss_pred HHHCC-----------------------------CCCEECCCCCCC--CCCHHHHHHHHHHHHHHHH---HCCCCEEEEE
T ss_conf 98476-----------------------------773200023468--9882267999999999998---5068509998
Q ss_pred ECCCCC
Q ss_conf 516544
Q gi|254780606|r 571 TQRPSV 576 (744)
Q Consensus 571 tQrp~~ 576 (744)
|-....
T Consensus 150 TH~~~L 155 (222)
T cd03285 150 THFHEL 155 (222)
T ss_pred EECHHH
T ss_conf 200779
No 62
>pfam02534 TraG TraG/TraD family. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems.
Probab=96.90 E-value=0.0012 Score=44.08 Aligned_cols=61 Identities=23% Similarity=0.351 Sum_probs=36.0
Q ss_pred EEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCC--CCC----HHHHHHCCCCEEEEECC
Q ss_conf 79998445687675310358999999999642013589998516544--441----46788505630572036
Q gi|254780606|r 530 YIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSV--DVI----TGTIKANFPIRISFQVT 596 (744)
Q Consensus 530 ~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~--~vi----~~~ik~n~~~ri~~~v~ 596 (744)
.++.+.|||+-|-. +. .+......+|+.||++++..|--+- ++- --.|-.|...++.|...
T Consensus 303 ~vlflLDEF~nlg~-----i~-~l~~~l~~~rg~gi~~~~i~Qs~~QL~~~YG~~~a~til~n~~~~~~f~~~ 369 (468)
T pfam02534 303 EVLFLLDEFPSLGK-----LE-ILEEALATIRGYGIRLTTICQSISQLKETYGGEGAKSILSNHAVVICFAAS 369 (468)
T ss_pred EEEEEEECHHCCCC-----HH-HHHHHHHHHHHCCCEEEEEEECHHHHHHHHCCCCHHHHHHCCCEEEEEECC
T ss_conf 47999982111487-----78-999999988617969999996199999885841278898548738999678
No 63
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.84 E-value=0.014 Score=36.74 Aligned_cols=128 Identities=16% Similarity=0.200 Sum_probs=70.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46997078753447999999999985680110799972342100012577520000444417876899999986676999
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEERYR 493 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r~~ 493 (744)
-++|.|.-.+|||++|+++.+..++... -+.. =-+...+..|+ ++++ .+.+.+....-+-....||.+-..
T Consensus 31 ~~iITGpN~gGKSt~Lktigl~~ilAq~----G~~v-pA~~a~~~~~d---~I~t-~i~~~d~i~~~~StF~~E~~~~~~ 101 (204)
T cd03282 31 FHIITGPNMSGKSTYLKQIALLAIMAQI----GCFV-PAEYATLPIFN---RLLS-RLSNDDSMERNLSTFASEMSETAY 101 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHH----CCEE-EHHHCCCCCCC---EEEE-EECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9999899988719999999999999996----8916-71321033667---7899-987666100664589999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHH----HHHHHHHHHHHHCCEEEEEE
Q ss_conf 99980778679999988642026776665432338679998445687675310358----99999999964201358999
Q gi|254780606|r 494 KMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEI----EGAIQRLAQMARAAGIHLIM 569 (744)
Q Consensus 494 ~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~----e~~~~~la~~~ra~Gihlil 569 (744)
++.... ..-+|++||+.. -+...|- ...+..|.++ |-+.|+
T Consensus 102 il~~~~-----------------------------~~sLvliDEl~~--GT~~~eg~a~a~aile~l~~~----~~~~i~ 146 (204)
T cd03282 102 ILDYAD-----------------------------GDSLVLIDELGR--GTSSADGFAISLAILECLIKK----ESTVFF 146 (204)
T ss_pred HHHHCC-----------------------------CCCEEEECCCCC--CCCHHHHHHHHHHHHHHHHHC----CCEEEE
T ss_conf 998588-----------------------------898798543348--998678999999999999967----987999
Q ss_pred EECCCCCCCCHHHHHHCCCC
Q ss_conf 85165444414678850563
Q gi|254780606|r 570 ATQRPSVDVITGTIKANFPI 589 (744)
Q Consensus 570 atQrp~~~vi~~~ik~n~~~ 589 (744)
+|-..+ |...+. +.+.
T Consensus 147 tTH~~~---L~~l~~-~~~~ 162 (204)
T cd03282 147 ATHFRD---IAAILG-NKSC 162 (204)
T ss_pred ECCHHH---HHHHHH-HCCC
T ss_conf 897689---999886-3888
No 64
>TIGR02746 TraC-F-type type-IV secretion system protein TraC; InterPro: IPR014117 The proteins in this entry are found in the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The proteins contain the Walker A and B motifs and so are putative nucleotide triphosphatases..
Probab=96.81 E-value=0.0017 Score=43.03 Aligned_cols=107 Identities=23% Similarity=0.239 Sum_probs=72.6
Q ss_pred CEEEEEHHHHHHHHH-HCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCC
Q ss_conf 679998445687675-3103589999999996420135899985165444414678850563057203681110032676
Q gi|254780606|r 529 PYIVIIVDEMADLMM-VAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGE 607 (744)
Q Consensus 529 p~ivvviDE~a~l~~-~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~ 607 (744)
-+-++||||.=.||. -+...+-.-|.+++|.+|-.|==||..||.-+ |-.. =|||-.+|-|+.-+ |-.+||.+
T Consensus 734 ~rK~~~iDEAW~Ll~~g~~~~~~~FIE~gyRr~RK~~Ga~~tiTQ~~~-D~~~--dka~~~arA~yaNS---~~~iiL~Q 807 (900)
T TIGR02746 734 RRKILIIDEAWSLLDDGANPQAANFIETGYRRARKYGGAFITITQGIE-DFYS--DKASPEARAAYANS---DWKIILRQ 807 (900)
T ss_pred CCEEEEEHHHHHHHHCCCCCHHHHHHHHHHHCCHHHCCCEEEEECCEE-HHHC--CCCCHHHHHHHHCC---CEEEEECC
T ss_conf 551676442489874278513589888763201111643689964400-1000--34798899988453---30041278
Q ss_pred C--CHHHHCCCCCEEEECCCCC----EEEEEECCCCHHHH
Q ss_conf 3--1688568984686468984----38999343898899
Q gi|254780606|r 608 H--GAEQLLGRGDMLYMSGGGR----IQRVHGPLVSDIEI 641 (744)
Q Consensus 608 ~--gae~l~g~gd~l~~~~~~~----~~r~~~~~~~~~~~ 641 (744)
. +=++|.-.+-.=|-+.+-+ +-.++|.+-|+-=|
T Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~i~sl~~~~~~GfSe~~I 847 (900)
T TIGR02746 808 SAESIEKLKAENPLQFSPFEKRLIKSLRTAKGAGFSELLI 847 (900)
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 8647899996389888988999997225356630676676
No 65
>PRK08694 consensus
Probab=96.80 E-value=0.011 Score=37.32 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=76.4
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCC-------CCCCCE--EEEEEECHHHHHH
Q ss_conf 0114846997078753447999999999985680110799972342100012-------577520--0004444178768
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVY-------DGIPHL--LTPVVTNPKKAVM 479 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~-------~~~ph~--~~~v~~~~~~~~~ 479 (744)
|.+.--++|||.+|+|||.|..+|+...+.... ...+++-.-|..-..+ .++++. ...-+++.++ .
T Consensus 215 l~~G~LiVIaaRPsmGKTalalnia~~~a~~~~---~~V~~fSLEMs~~~l~~Rlla~~s~v~~~~i~~g~l~~~e~--~ 289 (468)
T PRK08694 215 LQPGDLIIVAGRPSMGKTAFSINIAEHVAVEGK---LPVAVFSMEMGGAQLVMRMLGSVGRLDQSVLKTGRLEDEHW--G 289 (468)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC---CCEEEECCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCHHHH--H
T ss_conf 887847999617865378999999999998479---84799778899999999999972598632110489999999--9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCH------HHHHHH
Q ss_conf 99999986676999999807786799999886420267766654323386799984456876753103------589999
Q gi|254780606|r 480 ALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGK------EIEGAI 553 (744)
Q Consensus 480 ~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~------~~e~~~ 553 (744)
.+.++..+|...--.+......++.....+.+...... +. ..=+||||=+. ||...++ ++...-
T Consensus 290 ~~~~a~~~l~~~pl~idd~~~~t~~~i~a~~r~~~~~~----~~-----kl~~vvIDYLq-Li~~~~~~~~r~~~i~~is 359 (468)
T PRK08694 290 RLNEAVVKLSDAPVYIDETPGLTALELRARARRLARQF----NN-----KLGLIVIDYLQ-LMAGSGRSDNRASELGEIS 359 (468)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHH----CC-----CCCEEEEEHHH-HCCCCCCCCCHHHHHHHHH
T ss_conf 99999999862996897699998879999999999983----89-----87389973675-4168887655999999999
Q ss_pred HHHHHHHHCCEEEEEEEECCC
Q ss_conf 999996420135899985165
Q gi|254780606|r 554 QRLAQMARAAGIHLIMATQRP 574 (744)
Q Consensus 554 ~~la~~~ra~GihlilatQrp 574 (744)
..|-.+|+.++|.+|+.+|=-
T Consensus 360 r~LK~lAkel~ipvi~LsQLn 380 (468)
T PRK08694 360 RSLKALAKELQVPIIALSQLS 380 (468)
T ss_pred HHHHHHHHHHCCCEEEECCCC
T ss_conf 999999999799899963268
No 66
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.79 E-value=0.0031 Score=41.21 Aligned_cols=37 Identities=35% Similarity=0.546 Sum_probs=25.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE-ECCCC
Q ss_conf 69970787534479999999999856801107999-72342
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM-VDPKM 454 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l-iD~k~ 454 (744)
+||+|.||||||.+|++++-.+ +.....+++- =||-.
T Consensus 4 iLitG~TGSGKTTtl~all~~i---~~~~~~~IiTiEDPiE 41 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTIEDPIE 41 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHH---CCCCCCEEEEECCCHH
T ss_conf 9998999997999999999853---6378836999647377
No 67
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.76 E-value=0.021 Score=35.45 Aligned_cols=119 Identities=17% Similarity=0.184 Sum_probs=67.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46997078753447999999999985680110799972342100012577520000444417876899999986676999
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEERYR 493 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r~~ 493 (744)
.++|-|.-.||||++|+++.+..++.+.= -+ +--+...+. |.+ +++. +.+.+....-+-....||.+-..
T Consensus 27 ~~iiTGpN~~GKSt~Lk~i~l~~ilaq~G---~~--vpa~~~~~~-~~~---i~t~-i~~~d~~~~~~S~F~~E~~~~~~ 96 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGVNVILAQAG---AP--VCASSFELP-PVK---IFTS-IRVSDDLRDGISYFYAELRRLKE 96 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHC---CE--EEHHHEEEC-CCE---EEEE-EECCCHHHCCCCHHHHHHHHHHH
T ss_conf 89998999986599999999999999968---93--862447823-308---9999-83475122453579999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHH----HHHHHHHHHCCEEEEEE
Q ss_conf 99980778679999988642026776665432338679998445687675310358999----99999964201358999
Q gi|254780606|r 494 KMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGA----IQRLAQMARAAGIHLIM 569 (744)
Q Consensus 494 ~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~----~~~la~~~ra~Gihlil 569 (744)
++..... -...+|++||+.- -+...|-... +..|.+ .+.+.|+
T Consensus 97 il~~~~~---------------------------~~~sLvliDEl~~--GT~~~eg~a~a~a~le~l~~----~~~~~ii 143 (199)
T cd03283 97 IVEKAKK---------------------------GEPVLFLLDEIFK--GTNSRERQAASAAVLKFLKN----KNTIGII 143 (199)
T ss_pred HHHHHCC---------------------------CCCEEEEECCCCC--CCCHHHHHHHHHHHHHHHHH----CCCEEEE
T ss_conf 9997248---------------------------9857996143247--99867899999999999986----7987999
Q ss_pred EECCCC
Q ss_conf 851654
Q gi|254780606|r 570 ATQRPS 575 (744)
Q Consensus 570 atQrp~ 575 (744)
+|-...
T Consensus 144 tTH~~~ 149 (199)
T cd03283 144 STHDLE 149 (199)
T ss_pred ECCCHH
T ss_conf 887289
No 68
>PRK09165 replicative DNA helicase; Provisional
Probab=96.73 E-value=0.015 Score=36.51 Aligned_cols=151 Identities=15% Similarity=0.174 Sum_probs=74.8
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEE---EEEECCCCCEECCC---------------CCCC--CEEEEE
Q ss_conf 148469970787534479999999999856801107---99972342100012---------------5775--200004
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECR---MIMVDPKMLELSVY---------------DGIP--HLLTPV 470 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~---~~liD~k~~~~~~~---------------~~~p--h~~~~v 470 (744)
+.=-++|||.+|+|||.|..+|....+..+...... .....-+.|-|+-+ .+++ ++...-
T Consensus 204 ~GdLiIIAARPsmGKTafaLniA~n~A~~~~~~~~~~~~~~~~~g~~V~~FSLEMs~~ql~~Rlls~~s~V~~~~ir~g~ 283 (484)
T PRK09165 204 PSDLIILAGRPSMGKTALATNIAFNAAKAYLREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSEISSSKIRRGK 283 (484)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHCCC
T ss_conf 77379996079997789999999999987410222233211368984899947799999999999997268613554489
Q ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC----
Q ss_conf 4441787689999998667699999980778679999988642026776665432338679998445687675310----
Q gi|254780606|r 471 VTNPKKAVMALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG---- 546 (744)
Q Consensus 471 ~~~~~~~~~~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~---- 546 (744)
.++.++ ..+.+++.+|...--.+.....-+|....++.+...... .+. +||||=+. ||...+
T Consensus 284 l~~~e~--~~i~~a~~~l~~~~l~IdD~~~~ti~~Ira~~Rr~k~~~---------gl~--livIDYLq-Li~~~~~~~~ 349 (484)
T PRK09165 284 ISEEDF--EKLVDASQELQKLPLYIDDTPALSISALRARARRLKRQH---------GLD--LLVIDYLQ-LIRGSSKRSQ 349 (484)
T ss_pred CCHHHH--HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHH---------CCC--EEEEECHH-HCCCCCCCCC
T ss_conf 999999--999999999971984897799987999999999999860---------998--89995176-3578888861
Q ss_pred ----HHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf ----35899999999964201358999851654
Q gi|254780606|r 547 ----KEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 547 ----~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
.++...-..|-++|+-++|.+|+..|-=.
T Consensus 350 ~~R~~ev~~Isr~LK~lAkel~ipVi~LsQLnR 382 (484)
T PRK09165 350 DNRVQEISEITQGLKALAKELNIPVIALSQLSR 382 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 219999999999999999996996999745784
No 69
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.71 E-value=0.014 Score=36.64 Aligned_cols=151 Identities=21% Similarity=0.299 Sum_probs=79.0
Q ss_pred ECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC-------CC----CCEECCCCCCCCEEEEEEECH
Q ss_conf 1120114846997078753447999999999985680110799972-------34----210001257752000044441
Q gi|254780606|r 406 IADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD-------PK----MLELSVYDGIPHLLTPVVTNP 474 (744)
Q Consensus 406 ~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD-------~k----~~~~~~~~~~ph~~~~v~~~~ 474 (744)
-+++.+.-.+-|-|..|||||++|+. |.+|. .|+.=++++-+ ++ +.-|-.|.-+||+- |..|.
T Consensus 20 sl~v~~Ge~~~i~GpSG~GKSTlLr~-iaGl~---~p~~G~I~~~g~~i~~~~~~~R~ig~VfQ~~~LfP~lt--V~eNI 93 (213)
T cd03301 20 NLDIADGEFVVLLGPSGCGKTTTLRM-IAGLE---EPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMT--VYDNI 93 (213)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCC--HHHHH
T ss_conf 77986998999999998809999999-97699---99863999999999999976788789945876465470--99999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHH-HHHHHH
Q ss_conf 787689999998667699-9999807786799---------99988642026776665432338679998445-687675
Q gi|254780606|r 475 KKAVMALKWAVREMEERY-RKMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDE-MADLMM 543 (744)
Q Consensus 475 ~~~~~~l~~~~~em~~r~-~~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE-~a~l~~ 543 (744)
......-++-..|+++|. +++...+..++.. -.+|++-.+.-. .-|.|+ +.|| |+.|-.
T Consensus 94 ~~~l~~~~~~~~e~~~~v~~~l~~~gl~~~~~~~P~~LSGGqkQRVaiARAl~---------~~P~lL-LlDEP~saLD~ 163 (213)
T cd03301 94 AFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIV---------REPKVF-LMDEPLSNLDA 163 (213)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHH---------CCCCEE-EECCCCCCCCH
T ss_conf 98999859998999999999998759924650995569999999999999987---------599989-98388764298
Q ss_pred HCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 31035899999999964201358999851654
Q gi|254780606|r 544 VAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 544 ~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
... +.....|.+.-+..|+-+|+.|-.++
T Consensus 164 ~~r---~~i~~~l~~~~~~~~~T~i~vTHd~~ 192 (213)
T cd03301 164 KLR---VQMRAELKRLQQRLGTTTIYVTHDQV 192 (213)
T ss_pred HHH---HHHHHHHHHHHHHHCCEEEEECCCHH
T ss_conf 999---99999999999974998999999989
No 70
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.69 E-value=0.0058 Score=39.30 Aligned_cols=110 Identities=32% Similarity=0.472 Sum_probs=65.8
Q ss_pred HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEE-CCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHH
Q ss_conf 11484699707875344799999999998568011079997-23421000125775200004444178768999999866
Q gi|254780606|r 410 ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMV-DPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREM 488 (744)
Q Consensus 410 ~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~li-D~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em 488 (744)
+|---++|.|+||||||.-+-+||- |+|.-.-=+++-| || .||-. .|. ..++|..+-......|-+.--
T Consensus 125 ~kRGLviiVGaTGSGKSTtmAaMi~---yRN~~s~gHIiTIEDP--IEfih----~h~-~CIvTQREvGvDTesw~~Alk 194 (375)
T COG5008 125 AKRGLVIIVGATGSGKSTTMAAMIG---YRNKNSTGHIITIEDP--IEFIH----KHK-RCIVTQREVGVDTESWEVALK 194 (375)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHC---CCCCCCCCCEEEECCH--HHHHH----CCC-CEEEEEEEECCCHHHHHHHHH
T ss_conf 4374599987788884016899860---1346887735882381--99874----156-415873341446188999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 76999999807786799999886420267766654323386799984456876753103589999999996420135899
Q gi|254780606|r 489 EERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLI 568 (744)
Q Consensus 489 ~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihli 568 (744)
|.. +.-| =||+|-|..+- +-+| +-..+|+-| ||.
T Consensus 195 ------------------Ntl----------------RQaP-DvI~IGEvRsr-----etMe-yAi~fAeTG-----HLc 228 (375)
T COG5008 195 ------------------NTL----------------RQAP-DVILIGEVRSR-----ETME-YAIQFAETG-----HLC 228 (375)
T ss_pred ------------------HHH----------------HCCC-CEEEEEECCCH-----HHHH-HHHHHHHCC-----CEE
T ss_conf ------------------877----------------5189-86999730437-----6799-999887328-----658
Q ss_pred EEECCCC
Q ss_conf 9851654
Q gi|254780606|r 569 MATQRPS 575 (744)
Q Consensus 569 latQrp~ 575 (744)
+||=.-.
T Consensus 229 maTLHAN 235 (375)
T COG5008 229 MATLHAN 235 (375)
T ss_pred EEEECCC
T ss_conf 9985057
No 71
>KOG0922 consensus
Probab=96.68 E-value=0.019 Score=35.79 Aligned_cols=52 Identities=17% Similarity=0.330 Sum_probs=22.1
Q ss_pred EEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHH
Q ss_conf 7999844568767531035899999999964201358999851654444146788
Q gi|254780606|r 530 YIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIK 584 (744)
Q Consensus 530 ~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik 584 (744)
|=|||+||..+-.. ..+-.-+.+.+|.++-.. ..||+.+=.-+++.+.....
T Consensus 164 YsvIIlDEAHERsl-~TDiLlGlLKki~~~R~~--LklIimSATlda~kfS~yF~ 215 (674)
T KOG0922 164 YSVIILDEAHERSL-HTDILLGLLKKILKKRPD--LKLIIMSATLDAEKFSEYFN 215 (674)
T ss_pred CCEEEEECHHHHHH-HHHHHHHHHHHHHHCCCC--CEEEEEEEEECHHHHHHHHC
T ss_conf 44899832231015-788999999998732778--36999923524899999864
No 72
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.68 E-value=0.02 Score=35.69 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=70.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69970787534479999999999856801107999723421000125775200004444178768999999866769999
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEERYRK 494 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r~~~ 494 (744)
++|-|.-.||||++|+++.+..++.+.-- ++ --+...+..|+.+ ++ -+.+.+.....+-....||.+-...
T Consensus 33 ~iiTGpN~sGKSt~Lk~igl~~ilaq~G~---~v--pA~~a~i~~~d~I---~t-~i~~~d~i~~~~StF~~e~~~~~~i 103 (216)
T cd03284 33 LLITGPNMAGKSTYLRQVALIALLAQIGS---FV--PASKAEIGVVDRI---FT-RIGASDDLAGGRSTFMVEMVETANI 103 (216)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHCC---EE--EECCEEEEECCEE---EE-EECCCCHHHCCCCHHHHHHHHHHHH
T ss_conf 99989987745999999999999998687---58--7661599704469---99-5068621333726589999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHH-HHHHHHHHCCEEEEEEEECC
Q ss_conf 99807786799999886420267766654323386799984456876753103589999-99999642013589998516
Q gi|254780606|r 495 MSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAI-QRLAQMARAAGIHLIMATQR 573 (744)
Q Consensus 495 ~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~-~~la~~~ra~GihlilatQr 573 (744)
+.... .+-+|++||+.- -+...+-.... .-|-.+....+.+.|++|-.
T Consensus 104 l~~a~-----------------------------~~sLvliDEl~~--gT~~~eg~ala~aile~L~~~~~~~~i~tTH~ 152 (216)
T cd03284 104 LNNAT-----------------------------ERSLVLLDEIGR--GTSTYDGLSIAWAIVEYLHEKIGAKTLFATHY 152 (216)
T ss_pred HHHCC-----------------------------CCCEEEECCCCC--CCCHHHHHHHHHHHHHHHHHCCCCEEEEEECH
T ss_conf 98487-----------------------------761563344568--99857889999999999997079728975050
Q ss_pred CCCC
Q ss_conf 5444
Q gi|254780606|r 574 PSVD 577 (744)
Q Consensus 574 p~~~ 577 (744)
....
T Consensus 153 ~~L~ 156 (216)
T cd03284 153 HELT 156 (216)
T ss_pred HHHH
T ss_conf 8899
No 73
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.67 E-value=0.011 Score=37.48 Aligned_cols=165 Identities=19% Similarity=0.324 Sum_probs=84.0
Q ss_pred EEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCC-----------CEECCCCCCCCEEEEEEE
Q ss_conf 321120114846997078753447999999999985680110799972342-----------100012577520000444
Q gi|254780606|r 404 SVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKM-----------LELSVYDGIPHLLTPVVT 472 (744)
Q Consensus 404 ~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~-----------~~~~~~~~~ph~~~~v~~ 472 (744)
-|-+++.+.-.+.|-|-.|||||++|+. |.+|+ .|+.=++++-+-.. .-|-.|.-.||+- |..
T Consensus 17 ~vs~~v~~Ge~~~iiGpSGsGKSTLlr~-i~Gl~---~p~~G~I~~~G~di~~~~~~~r~ig~vfQ~~~Lfp~~t--V~e 90 (235)
T cd03299 17 NVSLEVERGDYFVILGPTGSGKSVLLET-IAGFI---KPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMT--VYK 90 (235)
T ss_pred CCEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCEEEEECCEECCCCCHHHCCEEEECCCCCCCCCCC--HHH
T ss_conf 1487988998999999996359999999-97499---99965999999999999976789789457986689990--999
Q ss_pred CHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHH-HHHH
Q ss_conf 4178768999999866769-99999807786799---------99988642026776665432338679998445-6876
Q gi|254780606|r 473 NPKKAVMALKWAVREMEER-YRKMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDE-MADL 541 (744)
Q Consensus 473 ~~~~~~~~l~~~~~em~~r-~~~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE-~a~l 541 (744)
+.........+-..++++| .+++...|..++.. -.+|++-.+.-. .-|.+ ++.|| ++.|
T Consensus 91 Ni~~~l~~~~~~~~e~~~rv~e~l~~~gl~~~~~~~p~~LSGGq~QRVaiARAl~---------~~P~l-lllDEP~s~L 160 (235)
T cd03299 91 NIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALV---------VNPKI-LLLDEPFSAL 160 (235)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHH---------CCCCE-EEEECCCCCC
T ss_conf 9999998769999999999999998779977874894458999999999999997---------38998-9992887646
Q ss_pred HHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEE
Q ss_conf 75310358999999999642013589998516544441467885056305720
Q gi|254780606|r 542 MMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQ 594 (744)
Q Consensus 542 ~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~ 594 (744)
-... ....+..|.++-+..|+-+|+.|...+ ++. .+.-||++=
T Consensus 161 D~~~---~~~i~~~l~~l~~~~~~T~i~vTHd~~-~a~------~~aDri~vl 203 (235)
T cd03299 161 DVRT---KEKLREELKKIRKEFGVTVLHVTHDFE-EAW------ALADKVAIM 203 (235)
T ss_pred CHHH---HHHHHHHHHHHHHHHCCEEEEECCCHH-HHH------HHCCEEEEE
T ss_conf 9999---999999999999982999999878999-999------969999999
No 74
>PRK05595 replicative DNA helicase; Provisional
Probab=96.66 E-value=0.033 Score=34.16 Aligned_cols=150 Identities=13% Similarity=0.113 Sum_probs=76.3
Q ss_pred CHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECC-------CCCCCC--EEEEEEECHHHHH
Q ss_conf 2011484699707875344799999999998568011079997234210001-------257752--0000444417876
Q gi|254780606|r 408 DLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSV-------YDGIPH--LLTPVVTNPKKAV 478 (744)
Q Consensus 408 dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~-------~~~~ph--~~~~v~~~~~~~~ 478 (744)
-|.+.--++|||.+|+|||.|.-+|....+.++ ....+++-.-|..-.. ..+++. +...-.++. -.
T Consensus 197 Gl~~GdLiiiaaRP~mGKTa~alnia~~~a~~~---g~~V~~fSlEMs~~ql~~R~ls~~s~i~~~~i~~g~l~~~--~~ 271 (444)
T PRK05595 197 GFQKGDMILIAARPSMGKTTFALNIAEYAALRE---GKSVVIFSLEMSKEQLAYKLLCSEANVDMLRLRTGNLEDK--DW 271 (444)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH--HH
T ss_conf 998577799985798980799999999999866---9937999588999999999999646988442326897999--99
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC------HHHHHH
Q ss_conf 89999998667699999980778679999988642026776665432338679998445687675310------358999
Q gi|254780606|r 479 MALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG------KEIEGA 552 (744)
Q Consensus 479 ~~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~------~~~e~~ 552 (744)
..+.++..++...--.+.....-++.....+........ .+ =+||||=+. ||.... .++...
T Consensus 272 ~~~~~a~~~l~~~~l~i~d~~~~ti~~i~~~~r~~~~~~---------~~--~liiiDYlq-Li~~~~~~~~r~~ev~~i 339 (444)
T PRK05595 272 ENIARASGPLAAAKIYIDDTAGVSVMEMRSKCRRLKIEH---------GI--DLILIDYLQ-LMSGGKSSESRQQEVSEI 339 (444)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC---------CC--CEEEEEHHH-HCCCCCCCCCHHHHHHHH
T ss_conf 999999999854897054899964899999999999873---------99--989982376-357898888899999999
Q ss_pred HHHHHHHHHCCEEEEEEEECCC
Q ss_conf 9999996420135899985165
Q gi|254780606|r 553 IQRLAQMARAAGIHLIMATQRP 574 (744)
Q Consensus 553 ~~~la~~~ra~GihlilatQrp 574 (744)
-..|-.+|+-++|.+|+..|=-
T Consensus 340 sr~LK~lAkel~ipvi~lsQLn 361 (444)
T PRK05595 340 SRSIKALAKEMECPVIALSQLS 361 (444)
T ss_pred HHHHHHHHHHHCCCEEEECCCC
T ss_conf 9999999999699799970268
No 75
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.65 E-value=0.0021 Score=42.34 Aligned_cols=158 Identities=20% Similarity=0.273 Sum_probs=76.0
Q ss_pred ECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCC-------------CEECCCCC-CCCEEEEEE
Q ss_conf 1120114846997078753447999999999985680110799972342-------------10001257-752000044
Q gi|254780606|r 406 IADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKM-------------LELSVYDG-IPHLLTPVV 471 (744)
Q Consensus 406 ~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~-------------~~~~~~~~-~ph~~~~v~ 471 (744)
-+.+.+.-.++|.|.+|||||++++. +.+|+ ....-.+ ++|-+. +.+ .|++ .-+++.+.|
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~-l~GLl-~p~~G~v---~~~g~~~~~~~~~~~~~~~vG~-VfQnpd~q~~~~tV 97 (235)
T COG1122 24 SLEIEKGERVLLIGPNGSGKSTLLKL-LNGLL-KPTSGEV---LVDGLDTSSEKSLLELRQKVGL-VFQNPDDQLFGPTV 97 (235)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHH-HCCCC-CCCCCEE---EECCCCCCCHHHHHHHHCCEEE-EEECHHHCEECCCH
T ss_conf 38987898999988999889999999-53767-6889848---8778133100218876312169-99971126104758
Q ss_pred E-CHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHCCCCCCCC---CCCCCCCEEEEEHHHHHHHHHHCC
Q ss_conf 4-4178768999999866769999-9980778679999988642026776665---432338679998445687675310
Q gi|254780606|r 472 T-NPKKAVMALKWAVREMEERYRK-MSHLSVRNIKSYNERISTMYGEKPQGCG---DDMRPMPYIVIIVDEMADLMMVAG 546 (744)
Q Consensus 472 ~-~~~~~~~~l~~~~~em~~r~~~-~~~~~~~~i~~~n~~~~~~~~~~~~~~~---~~~~~~p~ivvviDE~a~l~~~~~ 546 (744)
. |.......+..-.+||++|-.. +...|... |-.+....-+...+... .-+.--|. +++.||=-. +...
T Consensus 98 ~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~---~~~r~p~~LSGGqkqRvaIA~vLa~~P~-iliLDEPta--~LD~ 171 (235)
T COG1122 98 EDEVAFGLENLGLPREEIEERVAEALELVGLEE---LLDRPPFNLSGGQKQRVAIAGVLAMGPE-ILLLDEPTA--GLDP 171 (235)
T ss_pred HHHHHCCHHHCCCCHHHHHHHHHHHHHHHCCHH---HCCCCCCCCCCCCEEEHHHHHHHHCCCC-EEEECCCCC--CCCH
T ss_conf 888753574449998999999999999818611---1238811069731665886688871898-999749988--9897
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 35899999999964201358999851654
Q gi|254780606|r 547 KEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 547 ~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
+-.+..+..|-.+...-|+.+|++|-+-+
T Consensus 172 ~~~~~l~~~l~~L~~~~~~tiii~tHd~~ 200 (235)
T COG1122 172 KGRRELLELLKKLKEEGGKTIIIVTHDLE 200 (235)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf 89999999999988607976999947478
No 76
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.64 E-value=0.006 Score=39.21 Aligned_cols=149 Identities=23% Similarity=0.384 Sum_probs=73.6
Q ss_pred HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHH
Q ss_conf 11484699707875344799999999998568011079997234210001257752000044441787689999998667
Q gi|254780606|r 410 ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREME 489 (744)
Q Consensus 410 ~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~ 489 (744)
.+.||+|+.|..|+|||.+.+.++..|....... |++.--..|... ....+..
T Consensus 35 ~~~phlLf~GppG~GKTt~a~~la~~l~~~~~~~---------------------~~lelnasd~r~-id~vr~~----- 87 (318)
T PRK00440 35 KNMPHLLFAGPPGTGKTTAALALARELYGEYWRE---------------------NFLELNASDERG-IDVIRNK----- 87 (318)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC---------------------CEEEECCCCCCC-HHHHHHH-----
T ss_conf 9986698889599889999999999976986434---------------------768951645667-1789999-----
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEE
Q ss_conf 69999998077867999998864202677666543233867999844568767531035899999999964201358999
Q gi|254780606|r 490 ERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIM 569 (744)
Q Consensus 490 ~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihlil 569 (744)
|..|-.. . ....-+|-+||+||...|.. +....+.++--.- +-...+||
T Consensus 88 -------------i~~~~~~----~---------~~~~~~~kiiiiDE~d~l~~----~aq~aL~~~mE~~-~~~~~fil 136 (318)
T PRK00440 88 -------------IKEFART----A---------PVGGAPFKIIFLDEADNLTS----DAQQALRRTMEMY-SQTTRFIL 136 (318)
T ss_pred -------------HHHHHHH----C---------CCCCCCEEEEEEECCCCCCH----HHHHHHHHHHHCC-CCCCEEEE
T ss_conf -------------9999972----6---------77899738999868553225----5678887643105-66625886
Q ss_pred EECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHC-----------CCCCHHHH--CCCCCE
Q ss_conf 851654444146788505630572036811100326-----------76316885--689846
Q gi|254780606|r 570 ATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTIL-----------GEHGAEQL--LGRGDM 619 (744)
Q Consensus 570 atQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il-----------~~~gae~l--~g~gd~ 619 (744)
.+.+++ .++.. |+.-. ..|-|+-.+..+=+..| +..+.+.| ...|||
T Consensus 137 ~~n~~~-kii~~-i~SRc-~~i~f~~~~~~~i~~~L~~I~~~E~i~~~~~~l~~i~~~s~gdl 196 (318)
T PRK00440 137 SCNYSS-KIIDP-IQSRC-AVFRFSPLPKEAVIERLRYIAKNEGLEITDDALEAIYYVSEGDM 196 (318)
T ss_pred ECCCCC-CCCCC-HHHHH-EEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCH
T ss_conf 348833-37615-56551-01115789999999999999998599989999999998649989
No 77
>PRK05636 replicative DNA helicase; Provisional
Probab=96.63 E-value=0.017 Score=36.17 Aligned_cols=150 Identities=15% Similarity=0.162 Sum_probs=74.3
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECC-------CCCCC--CEEEEEEECHHHHHH
Q ss_conf 011484699707875344799999999998568011079997234210001-------25775--200004444178768
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSV-------YDGIP--HLLTPVVTNPKKAVM 479 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~-------~~~~p--h~~~~v~~~~~~~~~ 479 (744)
|.+.--++|||.+|+|||.|..+|....+.++ ....+++-.-|..-.. ..+++ ++...-.++.++ .
T Consensus 264 l~~G~LiIiAARPsmGKTalAlnia~n~A~~~---g~~v~~fSLEMs~~ql~~Rlla~~s~V~~~~ir~g~l~~~~~--~ 338 (507)
T PRK05636 264 LRGGQMIIVAARPGVGKSTIALDFMRSASIKN---NKASVIFSLEMSKSEIVMRLLSAEAEVRLADMRGGKMDEDAW--E 338 (507)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC---CCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHH--H
T ss_conf 88356799973787866899999999999876---993799715699899999999984798878885588788999--9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC------HHHHHHH
Q ss_conf 9999998667699999980778679999988642026776665432338679998445687675310------3589999
Q gi|254780606|r 480 ALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG------KEIEGAI 553 (744)
Q Consensus 480 ~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~------~~~e~~~ 553 (744)
.+..++.+|...--.+.....-++....++.+...... . + =+||||=+. ||.... .++...-
T Consensus 339 ~l~~a~~~l~~~pl~IdD~~~lti~~Ira~aRrlk~~~------~---l--~livVDYLQ-Lm~~~~~~~~R~~ev~~IS 406 (507)
T PRK05636 339 KLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQKH------D---L--KMIVVDYLQ-LMSSGKRVESRQQEVSEFS 406 (507)
T ss_pred HHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHC------C---C--CEEEEEHHH-HCCCCCCCCCHHHHHHHHH
T ss_conf 99999999861988998499976999999999998617------9---9--989984588-4568888766899999999
Q ss_pred HHHHHHHHCCEEEEEEEECCCC
Q ss_conf 9999964201358999851654
Q gi|254780606|r 554 QRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 554 ~~la~~~ra~GihlilatQrp~ 575 (744)
..|-.+|+.++|.+|+..|=-.
T Consensus 407 r~LK~lAkel~vpVi~LsQLnR 428 (507)
T PRK05636 407 RQLKLLAKELDVPLIAISQLNR 428 (507)
T ss_pred HHHHHHHHHHCCCEEEECCCCC
T ss_conf 9999999997998899712684
No 78
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=96.62 E-value=0.039 Score=33.64 Aligned_cols=45 Identities=18% Similarity=0.432 Sum_probs=32.2
Q ss_pred EEEHHHHHHHHHHCC-HHHHHHHHHHHHHHHCCEEEEEEEECCCCC
Q ss_conf 998445687675310-358999999999642013589998516544
Q gi|254780606|r 532 VIIVDEMADLMMVAG-KEIEGAIQRLAQMARAAGIHLIMATQRPSV 576 (744)
Q Consensus 532 vvviDE~a~l~~~~~-~~~e~~~~~la~~~ra~GihlilatQrp~~ 576 (744)
.||||-+..+..... .++...+..|.+..|..|+-.++..+..+.
T Consensus 122 ~vVIDsit~l~~~~~~~~~r~~l~~l~~~lk~~g~t~l~t~e~~~~ 167 (231)
T pfam06745 122 RVVIDSITTLFYLLKPAMAREILRRLKRVLKKLGVTAIFTSEKPSG 167 (231)
T ss_pred EEEEECCHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCC
T ss_conf 8999764164005889999999999999999769919999821257
No 79
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.61 E-value=0.063 Score=32.20 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=26.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCC--HHHEEEEEECCCC
Q ss_conf 699707875344799999999998568--0110799972342
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLR--PDECRMIMVDPKM 454 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~--p~~~~~~liD~k~ 454 (744)
..|+|..|+|||.|...+..+...... -..-+.+.||-++
T Consensus 22 tEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdtE~ 63 (235)
T cd01123 22 TEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 999999998499999999999842475367896299995367
No 80
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.61 E-value=0.015 Score=36.43 Aligned_cols=152 Identities=19% Similarity=0.221 Sum_probs=73.5
Q ss_pred EEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC--CCC---------------CEECCCCCCCCE
Q ss_conf 321120114846997078753447999999999985680110799972--342---------------100012577520
Q gi|254780606|r 404 SVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD--PKM---------------LELSVYDGIPHL 466 (744)
Q Consensus 404 ~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD--~k~---------------~~~~~~~~~ph~ 466 (744)
-+-+++.+.-.+.|-|..|||||++|+. |.+|. .|+.=++.+-+ ... .-|-.|.-+||+
T Consensus 16 ~vsl~i~~Ge~~~i~GpSGsGKSTLL~~-i~gl~---~p~sG~i~~~g~~~~~~~~~~~~~~rr~~iG~VfQ~~~L~~~l 91 (206)
T TIGR03608 16 DLNLTIEKGKMVAIVGESGSGKSTLLNI-IGLLE---KPDSGQVYLNGQETPPINSKKASKFRREKLGYLFQNFALIENE 91 (206)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHH-HHCCC---CCCCEEEEECCEECCCCCHHHHHHHHHCCEEEECCCCCCCCCC
T ss_conf 8077986998999987999709999999-97599---9897599999999998998899999865889985798767989
Q ss_pred EEEEEECHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHH
Q ss_conf 0004444178768999999866769-99999807786799---------9998864202677666543233867999844
Q gi|254780606|r 467 LTPVVTNPKKAVMALKWAVREMEER-YRKMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVD 536 (744)
Q Consensus 467 ~~~v~~~~~~~~~~l~~~~~em~~r-~~~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviD 536 (744)
- |..+..-......+-..+...| .+++...|..+... -.+|++-.+.- -.-|.| ++.|
T Consensus 92 t--V~eNi~l~l~~~~~~~~~~~~~~~~~L~~vgl~~~~~~~p~~LSGGe~QRVAIARAL---------~~~P~i-llaD 159 (206)
T TIGR03608 92 T--VEENLDLALKYSKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAI---------LKPSEL-ILAD 159 (206)
T ss_pred C--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCHHCCHHHHHHHHHHHHH---------HCCCCE-EEEC
T ss_conf 1--999999999865999999999999999986990565299244486999999999998---------249999-9963
Q ss_pred H-HHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 5-68767531035899999999964201358999851654
Q gi|254780606|r 537 E-MADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 537 E-~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
| .+.|-.....++...|.+|.+. |.-+|++|-.+.
T Consensus 160 EPT~~LD~~~~~~i~~ll~~l~~~----g~tii~vTHd~~ 195 (206)
T TIGR03608 160 EPTGSLDPKNRDEVLDLLLELNDE----GKTIIIVTHDPE 195 (206)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHC----CCEEEEECCCHH
T ss_conf 998778999999999999999867----999999898789
No 81
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=96.61 E-value=0.017 Score=36.08 Aligned_cols=276 Identities=16% Similarity=0.240 Sum_probs=133.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCHH---H-EEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHH
Q ss_conf 8469970787534479999999999856801---1-07999723421000125775200004444178768999999866
Q gi|254780606|r 413 PHILVAGTTGSGKSVAINTMIMSLLYRLRPD---E-CRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREM 488 (744)
Q Consensus 413 PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~---~-~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em 488 (744)
+-++|.|-||.|||.-.+.++--|- ....+ . |..+-|+|....- .-.++..++...
T Consensus 44 ~Ni~iYGkTGtGKT~vt~~v~~~l~-~~~~~~d~~D~~~~~~NC~~~~T-------------------~y~~~~~L~~~l 103 (383)
T TIGR02928 44 SNIFIYGKTGTGKTAVTKYVMKELE-EAAEDRDVRDVSTVYINCQILDT-------------------SYQVLVELANQL 103 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHH-HHHHCCCCCCEEEEEECCCCCCC-------------------HHHHHHHHHHHH
T ss_conf 7258878889878899999999999-98622699715899977854684-------------------699999999985
Q ss_pred H--HHHHHHHHCCCCCHHHHHHHHHHHH-CCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHH-----HHHHHHHH--HH
Q ss_conf 7--6999999807786799999886420-2677666543233867999844568767531035-----89999999--99
Q gi|254780606|r 489 E--ERYRKMSHLSVRNIKSYNERISTMY-GEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKE-----IEGAIQRL--AQ 558 (744)
Q Consensus 489 ~--~r~~~~~~~~~~~i~~~n~~~~~~~-~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~-----~e~~~~~l--a~ 558 (744)
. ..-...-..|+-.=.-|+..+.... .. --.+|||.||+--|....+++ +--.|.|+ .-
T Consensus 104 n~~~~~~~vP~tG~s~~~~~~~l~~~l~~~~-----------~~~~~ivLDEiD~Lv~~~~d~PAyS~~LY~L~Ra~~~~ 172 (383)
T TIGR02928 104 NRRGSGEEVPTTGLSTSEVFRELYKELNRER-----------GDSLIIVLDEIDKLVRKDDDDPAYSKLLYQLSRARENG 172 (383)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-----------CCEEEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 1577888898877878999999999983201-----------88799986231022158888807878853433100035
Q ss_pred HHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHH----CCCC-CEEEECCC--CCEEEE
Q ss_conf 6420135899985165444414678850563057203681110032676316885----6898-46864689--843899
Q gi|254780606|r 559 MARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQL----LGRG-DMLYMSGG--GRIQRV 631 (744)
Q Consensus 559 ~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l----~g~g-d~l~~~~~--~~~~r~ 631 (744)
.-..+=|++|-=|...+ .+.|+..||==.+. .--++..-.+|++| --+= ||-|..|- ...|++
T Consensus 173 ~~~~~~vgvIgISND~~-------f~~~Ld~RVkSsL~---~eei~FpPYdA~eL~~IL~~R~v~~AF~dGvl~d~VI~l 242 (383)
T TIGR02928 173 DLENAKVGVIGISNDLK-------FRENLDPRVKSSLC---EEEIVFPPYDAEELRDILENRAVEKAFYDGVLDDGVIPL 242 (383)
T ss_pred CCCCCCEEEEEEECCCH-------HHHHCCCCEECCCC---CCCCEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 77885348999865714-------36445753013248---740040798869999999720312033688546227999
Q ss_pred EECCCCHHH--HHHHHHHHHHCCCCCCCC---CCCCCCCCCCCCCCCCCCCCC-CCCCHHH-------------HHHH-H
Q ss_conf 934389889--999999998408875311---112455554444566777777-7660389-------------9999-9
Q gi|254780606|r 632 HGPLVSDIE--IEKVVQHLKKQGCPEYLN---TVTTDTDTDKDGNNFDSEEKK-ERSNLYA-------------KAVD-L 691 (744)
Q Consensus 632 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~-~ 691 (744)
=+||...+. -.+..|-++.-|+--.-+ .++.+..... ...- |.|-+.+ .|+- +
T Consensus 243 cAA~aAq~hGDAR~AiDLLR~AGe~A~~~g~~~Vt~~HV~~A-------~e~~PE~~r~~e~~~~Lp~h~k~~L~A~~~l 315 (383)
T TIGR02928 243 CAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEEA-------QEKIPEVDRVLELIRGLPTHSKLVLLAIANL 315 (383)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH-------HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999862067878999999998768753157631008889999-------9832228899998607986799999999999
Q ss_pred HH---HCCCEEEEEEECCCC----------CCHHHHHHHHHHHHHCCCCCHHHCCCCC
Q ss_conf 99---749862322000001----------0078999999999987975702168862
Q gi|254780606|r 692 VI---DNQRCSTSFIQRRLQ----------IGYNRAALLVERMEQEGLVSEADHVGKR 736 (744)
Q Consensus 692 ~~---~~~~~s~s~~qr~~~----------~g~~ra~~~~~~~e~~g~~~~~~~~~~r 736 (744)
.. ...++.|+-+...++ ++|.|.-.+|-.|+..|||+-..-++-|
T Consensus 316 ~~~~~~~~~~~t~~vY~~Y~~~c~~~~~dpl~~rR~~~~l~eL~~LG~~~~~~~~~G~ 373 (383)
T TIGR02928 316 AAESPEEDPFRTGEVYEVYKELCEDIGVDPLTQRRISDLLNELDMLGLVEAEERNKGR 373 (383)
T ss_pred HHHCCCCCEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 8516788736612778999999876267766146799988767660733456774267
No 82
>pfam05707 Zot Zonular occludens toxin (Zot). This family consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophages present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers
Probab=96.58 E-value=0.003 Score=41.24 Aligned_cols=61 Identities=21% Similarity=0.383 Sum_probs=43.9
Q ss_pred EEEHHHHHHHHHH--CCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEEC
Q ss_conf 9984456876753--103589999999996420135899985165444414678850563057203
Q gi|254780606|r 532 VIIVDEMADLMMV--AGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQV 595 (744)
Q Consensus 532 vvviDE~a~l~~~--~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v 595 (744)
+|||||...+.-. .++.....+..|+. .|-.|+-+||-||.|+ -|...||+.+..-+-++=
T Consensus 73 liViDE~~~~~~~r~~~~~~~~~i~~l~~-HRH~G~DiiliTQ~~~--~id~~ir~lve~~~~~~r 135 (183)
T pfam05707 73 LLVIDEAQTWFPSRRGGDKVPPVLDAFST-HRHLGWDIILITQNPS--KIDKQIRALVEHHVHCRR 135 (183)
T ss_pred EEEEECCHHHCCCCCCCCCCCHHHHHHHH-CCCCCCEEEEEECCHH--HHHHHHHHHHCEEEEEEE
T ss_conf 99998976554887778888389999998-0778820899918979--972999986148999995
No 83
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=96.57 E-value=0.0026 Score=41.67 Aligned_cols=175 Identities=22% Similarity=0.330 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCC------EEEEEEEECCCEEEEEEECCCCCCHH--------HHHHHHHHHHHHHCC--
Q ss_conf 00788998899999987403551------38986764892589997548886399--------998599999987147--
Q gi|254780606|r 285 ITHEILEKNAGSLETILEEFGIK------GEIINVNPGPVVTLYEFEPAPGIKSS--------RVIGLADDIARSMSS-- 348 (744)
Q Consensus 285 ~~~~~~~~~~~~l~~~l~~~~~~------~~~~~~~~gp~~~~~~~~~~~g~~~~--------~~~~~~~d~~~~~~~-- 348 (744)
++..+.+..++.+..-+..||.= -.+.++-.-+....|-.. .-|+.-+ -+..+.+-|+..+..
T Consensus 28 ~~~~e~~~l~~~i~~~~~g~G~Le~ll~dd~i~dImVn~~~~v~v~~-~~~~~~t~irf~d~~~l~~ii~ria~~vgrri 106 (355)
T COG4962 28 ISEAELDSLARDIQDELTGYGPLEPLLADDDIEDIMVNGPGRVFVER-KGGLEPTDIRFLDEAALLRIIQRIAAAVGRRI 106 (355)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEEECCCCCEEEEE-CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 22578999999999875062320034408974168862787389993-27454578624898999999999999858810
Q ss_pred --CCCEE-EEECCCCEEEEECCCCCCCEEEH-HHHHCCHHHCCCCCCEEEEEEECC---CCCEEECCHHH-CCCEEEEEC
Q ss_conf --76327-75189834544268888870765-875128121146783689842057---88732112011-484699707
Q gi|254780606|r 349 --LSARV-AVIPKRNAIGIELPNETRETVYL-RQIIESRSFSHSKANLALCLGKTI---SGESVIADLAN-MPHILVAGT 420 (744)
Q Consensus 349 --~~~~~-~~~pg~~~~~~~~p~~~~~~v~~-~~~~~~~~~~~~~~~l~~~~g~~~---~g~~~~~dl~~-~PH~lvaG~ 420 (744)
.+-.+ |..|..+-|-.-+| .|.+ .-.+.-..|.+.+..|--.+.... ..-.+.+...+ -...||+|.
T Consensus 107 D~~~P~~darLpdGsRvna~~p-----Pva~dGp~lsIRKf~k~~ltl~dli~~gt~~~~~a~~L~~av~~r~NILisGG 181 (355)
T COG4962 107 DESQPIVDARLPDGSRLNANSP-----PVAIDGPTLSIRKFPKIKLTLLDLIIFGTMIRRAAKFLRRAVGIRCNILISGG 181 (355)
T ss_pred CCCCCEEEEECCCCCEEEEECC-----CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCEEEEEECC
T ss_conf 4689636526798866775248-----63257875044125655255999987389588999999999862015999678
Q ss_pred CCCCHHHHHHHHHHHHHHHCCHHHEEEEEE-CCCCCEECCCCCCCCEEEEEEECHH
Q ss_conf 875344799999999998568011079997-2342100012577520000444417
Q gi|254780606|r 421 TGSGKSVAINTMIMSLLYRLRPDECRMIMV-DPKMLELSVYDGIPHLLTPVVTNPK 475 (744)
Q Consensus 421 TgsGKS~~l~~~i~sl~~~~~p~~~~~~li-D~k~~~~~~~~~~ph~~~~v~~~~~ 475 (744)
|||||+++||++. ..-++++ +.+.| |--...+. -||++- ..|.+.
T Consensus 182 TGSGKTTlLNal~----~~i~~~e-RvItiEDtaELql~----~ph~vr-L~TR~~ 227 (355)
T COG4962 182 TGSGKTTLLNALS----GFIDSDE-RVITIEDTAELQLA----HPHVVR-LETRPP 227 (355)
T ss_pred CCCCHHHHHHHHH----HCCCCCC-EEEEEEEHHHHCCC----CCCEEE-EEECCC
T ss_conf 7887999999997----1579765-08998123664469----985578-863488
No 84
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.56 E-value=0.011 Score=37.45 Aligned_cols=153 Identities=18% Similarity=0.214 Sum_probs=74.2
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCC---CE-----------ECCCCCCCCEEEEE
Q ss_conf 21120114846997078753447999999999985680110799972342---10-----------00125775200004
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKM---LE-----------LSVYDGIPHLLTPV 470 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~---~~-----------~~~~~~~ph~~~~v 470 (744)
+-+++.+.-.+.+-|-.|||||++|+. |.+| .+-+.-++.+--.|.+. -+ |-.|.-+||+ .|
T Consensus 20 vsl~i~~Ge~v~i~GpSGsGKSTLl~~-i~gl-~~p~sG~i~i~g~~~~~~~~~~~~~~Rr~iG~VfQ~~~L~~~l--tV 95 (214)
T cd03292 20 INISISAGEFVFLVGPSGAGKSTLLKL-IYKE-ELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDR--NV 95 (214)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHH-HHCC-CCCCCEEEEECCEECCCCCHHHHHHHHCCEEEEEECCCCCCCC--CH
T ss_conf 177985998999997999539999999-9629-8988649999999989899778999866749990187647999--79
Q ss_pred EECHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHH-HH
Q ss_conf 444178768999999866769-99999807786799---------99988642026776665432338679998445-68
Q gi|254780606|r 471 VTNPKKAVMALKWAVREMEER-YRKMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDE-MA 539 (744)
Q Consensus 471 ~~~~~~~~~~l~~~~~em~~r-~~~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE-~a 539 (744)
..+.........+-..++.+| ..++...|..+... -.+|++-.+.-. .-|. +++.|| .+
T Consensus 96 ~eNv~~~l~~~~~~~~~~~~rv~~~L~~vgL~~~~~~~p~~LSGGqkQRvaIARALv---------~~P~-ill~DEPT~ 165 (214)
T cd03292 96 YENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIV---------NSPT-ILIADEPTG 165 (214)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHH---------CCCC-EEEECCCCC
T ss_conf 999999999849999999999999998779965754994248889999999999997---------2999-999839878
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 767531035899999999964201358999851654
Q gi|254780606|r 540 DLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 540 ~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
.|--....++...+..| +..|+-+|+.|..+.
T Consensus 166 ~LD~~~~~~i~~ll~~l----~~~g~Tii~vTHd~~ 197 (214)
T cd03292 166 NLDPDTTWEIMNLLKKI----NKAGTTVVVATHAKE 197 (214)
T ss_pred CCCHHHHHHHHHHHHHH----HHCCCEEEEECCCHH
T ss_conf 77989999999999999----850999999898989
No 85
>pfam10236 DAP3 Mitochondrial ribosomal death-associated protein 3. This is a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.51 E-value=0.066 Score=32.06 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=38.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEE--CCCCCCCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 46997078753447999999999985680110799972342100--01257752000044441787689999998
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLEL--SVYDGIPHLLTPVVTNPKKAVMALKWAVR 486 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~--~~~~~~ph~~~~v~~~~~~~~~~l~~~~~ 486 (744)
-.++-|..|+|||++|..++.- ++ .-+=+-|++=++...-- ..|...+. ....+.-+..+...|+....
T Consensus 25 r~vL~G~~GsGKS~~L~q~v~~-A~--~~~wiVl~vP~~~~~~~~~~~~~~s~~-~~~~ydqP~~a~~~L~~~~~ 95 (274)
T pfam10236 25 RFVLTGERGSGKSVLLAQAMAY-AL--TQGWVVLHVPEAEDLVNGTTDYAPDPG-NPGLYDQPMYAAALLQRILK 95 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HH--HCCEEEEECCCHHHHHCCCCEEEECCC-CCCEEECHHHHHHHHHHHHH
T ss_conf 8998897997799999999999-98--599899984988998308642768899-99713578999999999999
No 86
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=96.51 E-value=0.002 Score=42.54 Aligned_cols=40 Identities=33% Similarity=0.623 Sum_probs=27.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEE-CCCCC
Q ss_conf 484699707875344799999999998568011079997-23421
Q gi|254780606|r 412 MPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMV-DPKML 455 (744)
Q Consensus 412 ~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~li-D~k~~ 455 (744)
--.+||+|.||||||++|++++..+ ...+-+++.| |+-..
T Consensus 139 ~~~ilIsG~TGSGKTT~l~all~~i----~~~~~riitiED~~El 179 (283)
T pfam00437 139 RGNILVSGGTGSGKTTLLYALLNEI----NTDDERIVTIEDPVEI 179 (283)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHC----CCCCCCEEEECCCCEE
T ss_conf 9759998899998899999999840----8777627873378523
No 87
>PRK08082 consensus
Probab=96.51 E-value=0.019 Score=35.74 Aligned_cols=151 Identities=15% Similarity=0.146 Sum_probs=77.1
Q ss_pred CHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECC-------CCCCCCE--EEEEEECHHHHH
Q ss_conf 2011484699707875344799999999998568011079997234210001-------2577520--000444417876
Q gi|254780606|r 408 DLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSV-------YDGIPHL--LTPVVTNPKKAV 478 (744)
Q Consensus 408 dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~-------~~~~ph~--~~~v~~~~~~~~ 478 (744)
-|.+.--.+|||.+|+|||.|..+|+..++.++.- ..+++-.-|..-.. ..++++- ...-.++.++
T Consensus 199 G~~~g~LiviaaRPsmGKTa~alnia~~~a~~~~~---~V~~fSlEM~~~~l~~R~la~~s~i~~~~i~~g~l~~~e~-- 273 (453)
T PRK08082 199 GFQRNDLIIVAARPSVGKTAFALNIAQNVATKTDE---NVAIFSLEMGADQLVMRMLCAEGNIDAQRLRTGSLTSDDW-- 273 (453)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC---CEEEEECCCCHHHHHHHHHHCCCCCCHHHHHCCCCCHHHH--
T ss_conf 77758579998678875789999999999985599---4899731389899999999715588866775189999999--
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC-------HHHHH
Q ss_conf 89999998667699999980778679999988642026776665432338679998445687675310-------35899
Q gi|254780606|r 479 MALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG-------KEIEG 551 (744)
Q Consensus 479 ~~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~-------~~~e~ 551 (744)
..+.++..+|.+.--.+.....-++.....+.+...... ..=+||||=+. ||...+ .++..
T Consensus 274 ~~i~~a~~~l~~~~l~idd~~~~~i~~i~~~~r~~~~~~-----------~~~livIDYlq-Li~~~~~~~~~r~~ev~~ 341 (453)
T PRK08082 274 GKLTMAMGSLSNAGIYIDDTPGIRVNEIRAKCRRLKQEQ-----------GLGMILIDYLQ-LIQGSGRSGENRQQEVSE 341 (453)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC-----------CCCEEEEECHH-HCCCCCCCCCCHHHHHHH
T ss_conf 999999998506973897899998999999999999866-----------99889995077-337789888789999999
Q ss_pred HHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 999999964201358999851654
Q gi|254780606|r 552 AIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 552 ~~~~la~~~ra~GihlilatQrp~ 575 (744)
.-..|-++|+.++|.+|+.+|=-.
T Consensus 342 isr~LK~lAkel~ipvi~lsQLnR 365 (453)
T PRK08082 342 ISRTLKALARELEVPVIALSQLSR 365 (453)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 999999999996997999644784
No 88
>PRK06321 replicative DNA helicase; Provisional
Probab=96.50 E-value=0.038 Score=33.70 Aligned_cols=147 Identities=16% Similarity=0.187 Sum_probs=76.5
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCE--E-----CCCCCCCC--EEEEEEECHHHHHHHH
Q ss_conf 1484699707875344799999999998568011079997234210--0-----01257752--0000444417876899
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLE--L-----SVYDGIPH--LLTPVVTNPKKAVMAL 481 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~--~-----~~~~~~ph--~~~~v~~~~~~~~~~l 481 (744)
+.--++|||.+|+|||.|..+|...++.++. ....++-.-|.. + +...++++ +...-+++.+ ...+
T Consensus 225 ~GdliviaaRPsmGKTalalnia~~~a~~~~---~~v~~fSLEMs~~ql~~R~ls~~s~i~~~~i~~g~l~~~e--~~~~ 299 (472)
T PRK06321 225 PSNLMILAARPAMGKTALALNIAENFCFQNR---LPVGIFSLEMTVDQLIHRIICSRSEVESKKISVGDLSGRD--FQRI 299 (472)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCC---CCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH--HHHH
T ss_conf 6757998538999779999999999998569---9469975779999999999874037675521047999999--9999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC---------HHHHHH
Q ss_conf 99998667699999980778679999988642026776665432338679998445687675310---------358999
Q gi|254780606|r 482 KWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG---------KEIEGA 552 (744)
Q Consensus 482 ~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~---------~~~e~~ 552 (744)
.+++.+|...--.+.....-+|.....+.+..+... ..=+||||=+. ||...+ .++...
T Consensus 300 ~~a~~~l~~~~l~idd~~~~ti~~i~~~~r~~k~~~-----------~l~~vvIDYlq-L~~~~~~~~~~~~r~~~i~~i 367 (472)
T PRK06321 300 VSVVNEMQEHTLLIDDQPGLKITDLRARARRMKESY-----------DIQFLIIDYLQ-LLSGSGTLRNSESRQTEISEI 367 (472)
T ss_pred HHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHC-----------CCCEEEEEEHH-HCCCCCCCCCCCCHHHHHHHH
T ss_conf 999999854875786799998999999999998738-----------99879997277-416777777788899999999
Q ss_pred HHHHHHHHHCCEEEEEEEECCC
Q ss_conf 9999996420135899985165
Q gi|254780606|r 553 IQRLAQMARAAGIHLIMATQRP 574 (744)
Q Consensus 553 ~~~la~~~ra~GihlilatQrp 574 (744)
-..|-.+|+.++|.+|+..|=-
T Consensus 368 sr~lK~lAkel~vpvi~LsQLn 389 (472)
T PRK06321 368 SRMLKNLARELNIPILCLSQLS 389 (472)
T ss_pred HHHHHHHHHHHCCCEEEECCCC
T ss_conf 9999999999799799972268
No 89
>PRK07004 replicative DNA helicase; Provisional
Probab=96.49 E-value=0.026 Score=34.88 Aligned_cols=150 Identities=19% Similarity=0.160 Sum_probs=77.0
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEEC-------CCCCCCCE--EEEEEECHHHHHH
Q ss_conf 01148469970787534479999999999856801107999723421000-------12577520--0004444178768
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELS-------VYDGIPHL--LTPVVTNPKKAVM 479 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~-------~~~~~ph~--~~~v~~~~~~~~~ 479 (744)
|.+.--++|||.+|+|||.|..+|....+.++ ....+++-.-|..-. ...++++. ...-.++.+ ..
T Consensus 210 l~~gdLiIIAARPsmGKTafAlniA~n~A~~~---g~~V~~FSLEMs~eql~~Rlls~~s~I~~~~ir~g~l~~~e--~~ 284 (460)
T PRK07004 210 MHGGELIIVAGRPSMGKTAFSMNIGEYVAVEY---GLPVAVFSMEMPGTQLAMRMLGSVGRLDQHRMRTGRLTDED--WP 284 (460)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCHHH--HH
T ss_conf 98775799973687642699999999998725---88669984779999999999986069882110078899999--99
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC------HHHHHHH
Q ss_conf 9999998667699999980778679999988642026776665432338679998445687675310------3589999
Q gi|254780606|r 480 ALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG------KEIEGAI 553 (744)
Q Consensus 480 ~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~------~~~e~~~ 553 (744)
.+.+++.+|...--.+.....-++.....+.+...... + ++ =+||||=+. ||...+ .++...-
T Consensus 285 ~i~~a~~~l~~~~l~IdD~~~lt~~~ira~~Rr~~~~~----g----~l--~lvviDYlq-li~~~~~~~~r~~ei~~is 353 (460)
T PRK07004 285 KLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQC----G----KL--GLIIIDYLQ-LMSGSSQGENRATEISEIS 353 (460)
T ss_pred HHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHC----C----CC--CEEEEEHHH-HCCCCCCCCCHHHHHHHHH
T ss_conf 99999999855974896898730789999999999743----5----88--899850775-4478888888999999999
Q ss_pred HHHHHHHHCCEEEEEEEECCC
Q ss_conf 999996420135899985165
Q gi|254780606|r 554 QRLAQMARAAGIHLIMATQRP 574 (744)
Q Consensus 554 ~~la~~~ra~GihlilatQrp 574 (744)
..|-++|+-++|.+|+.+|=-
T Consensus 354 r~lK~lAkel~ipvi~lsQLn 374 (460)
T PRK07004 354 RSLKSLAKELDVPVIALSQLN 374 (460)
T ss_pred HHHHHHHHHHCCCEEEECCCC
T ss_conf 999999999699789970468
No 90
>PHA00520 packaging NTPase P4
Probab=96.48 E-value=0.02 Score=35.65 Aligned_cols=124 Identities=20% Similarity=0.321 Sum_probs=65.6
Q ss_pred CCCCEEECCHHH----CCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEE-EECH
Q ss_conf 788732112011----48469970787534479999999999856801107999723421000125775200004-4441
Q gi|254780606|r 400 ISGESVIADLAN----MPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPV-VTNP 474 (744)
Q Consensus 400 ~~g~~~~~dl~~----~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v-~~~~ 474 (744)
..-.|++..+-. ---.+|-|.||||||.++|.+..-|.-+..- +.|-+.. -+.-|+-.. .++ ++|.
T Consensus 97 ~a~~pvv~~~~~~~i~SG~~vv~G~t~sGKT~~lna~~~~~~~k~~~-----v~IRwGE-p~e~yde~e---~~~~~sdL 167 (326)
T PHA00520 97 VACSPVVHRWGGHRIASGMVIVTGGTGSGKTPLLNALGEPLGGKDKD-----VTVRWGE-PLEGYDEAE---RPLYGSDL 167 (326)
T ss_pred CCCCCCEEECCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCC-----EEEEECC-CCCCCCCCC---CCCCCCCH
T ss_conf 02453100036652104249996478888675566542102589987-----4898368-543346201---33210449
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC--------
Q ss_conf 787689999998667699999980778679999988642026776665432338679998445687675310--------
Q gi|254780606|r 475 KKAVMALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG-------- 546 (744)
Q Consensus 475 ~~~~~~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~-------- 546 (744)
...+.. +..-| +-..+|+||-|..+.-..+
T Consensus 168 ~~~l~v---~l~a~---------------------------------------~~~~vvvvDSlR~v~~~l~Gnat~GGI 205 (326)
T PHA00520 168 NVFLAV---ILRAM---------------------------------------LQHRVVVVDSLRNVIFALGGNATSGGI 205 (326)
T ss_pred HHHHHH---HHHHH---------------------------------------HCCCEEEEECHHHHHHHCCCCCCCCCH
T ss_conf 999999---99986---------------------------------------457179952146666441378787744
Q ss_pred -HHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf -35899999999964201358999851654
Q gi|254780606|r 547 -KEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 547 -~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
.-+-.+|..|.+++++.|+.+|++- .|.
T Consensus 206 Sr~~y~~LTdl~n~aas~gc~vV~~l-NPm 234 (326)
T PHA00520 206 SRGAYDLLTDIGNMAASRGCVVVASL-NPM 234 (326)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEC-CCC
T ss_conf 68899999888888876395799973-888
No 91
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.48 E-value=0.014 Score=36.58 Aligned_cols=156 Identities=15% Similarity=0.222 Sum_probs=76.5
Q ss_pred CCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEEC-------CCCCCCCEEEE
Q ss_conf 887321120----1148469970787534479999999999856801107999723421000-------12577520000
Q gi|254780606|r 401 SGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELS-------VYDGIPHLLTP 469 (744)
Q Consensus 401 ~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~-------~~~~~ph~~~~ 469 (744)
+|+++.-|+ .+.=++-|.|.||||||++++.|+ .+ |-+ -..+.+--+|.+..... ....-+|++..
T Consensus 361 ~~~~vL~~is~~i~~Ge~vaIVG~SGsGKSTl~~LL~-g~-~p~-~G~I~i~g~di~~i~~~~lr~~i~~V~Q~~~LF~~ 437 (588)
T PRK11174 361 DGKTLAGPLNFTLPAGQRVALVGPSGAGKTSLLNALL-GF-LPY-QGSLKINGIELRELDPESWRKHLSWVGQNPQLFHG 437 (588)
T ss_pred CCCEECCCEEEEECCCCEEEEECCCCCCHHHHHHHHH-HH-CCC-CCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCC
T ss_conf 9985103646997499789998999864999999998-72-898-83899999860308999999660351666777766
Q ss_pred -----------EEECHHHHHHHHHHH-----HHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHCCCCCCCCCCCCCCCEEE
Q ss_conf -----------444417876899999-----9866769999998077867-99999886420267766654323386799
Q gi|254780606|r 470 -----------VVTNPKKAVMALKWA-----VREMEERYRKMSHLSVRNI-KSYNERISTMYGEKPQGCGDDMRPMPYIV 532 (744)
Q Consensus 470 -----------v~~~~~~~~~~l~~~-----~~em~~r~~~~~~~~~~~i-~~~n~~~~~~~~~~~~~~~~~~~~~p~iv 532 (744)
-++| ++...+++.+ +..|...|+..-..+..++ .+=.+|++-.+.-.. . |- +
T Consensus 438 TI~eNI~~g~~~atd-eei~~A~~~a~~~~~I~~Lp~GldT~vge~G~~LSGGQrQRiaiARAll~--------~-~~-I 506 (588)
T PRK11174 438 TLRDNVLLANPDASD-EQLQQALENAWVSEFVPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQ--------P-CQ-L 506 (588)
T ss_pred CHHHHHHCCCCCCCH-HHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC--------C-CC-E
T ss_conf 299865335854334-57999999862478998451322363228888779999999999999837--------9-89-8
Q ss_pred EEHHHHHHHHHHCCHHHHHHHHH-HHHHHHCCEEEEEEEECCCC
Q ss_conf 98445687675310358999999-99964201358999851654
Q gi|254780606|r 533 IIVDEMADLMMVAGKEIEGAIQR-LAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 533 vviDE~a~l~~~~~~~~e~~~~~-la~~~ra~GihlilatQrp~ 575 (744)
+|.||.---+. .+-|..|.+ |.+. .-|--+|+-|.|++
T Consensus 507 LILDEaTSaLD---~~tE~~i~~~L~~~--~~~rTviiIaHRls 545 (588)
T PRK11174 507 LLLDEPTASLD---AHSEQLVMQALNAA--SQGQTTLMVTHQLE 545 (588)
T ss_pred EEEECCCCCCC---HHHHHHHHHHHHHH--CCCCEEEEEECCHH
T ss_conf 99989877989---99999999999986--79998999806799
No 92
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.46 E-value=0.015 Score=36.53 Aligned_cols=164 Identities=19% Similarity=0.265 Sum_probs=78.8
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEE--CC---CC-----------CEECCCCCCCCEEE
Q ss_conf 2112011484699707875344799999999998568011079997--23---42-----------10001257752000
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMV--DP---KM-----------LELSVYDGIPHLLT 468 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~li--D~---k~-----------~~~~~~~~~ph~~~ 468 (744)
+-+++.+.-.+-|-|..|||||++++ +|.+|. .|+.=.+++- |. +. .-|-.|+-+|++
T Consensus 24 vsl~i~~Ge~~~ivG~SGsGKSTllr-~i~gL~---~p~sG~I~~~g~~i~~~~~~~~~~~Rr~ig~VFQ~~~L~~~~-- 97 (233)
T cd03258 24 VSLSVPKGEIFGIIGRSGAGKSTLIR-CINGLE---RPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR-- 97 (233)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHH-HHHCCC---CCCCCEEEECCEECCCCCHHHHHHHHCCCCEEECCCCCCCCC--
T ss_conf 28899999999998898058999999-996799---999808999999989799999999862587794377889988--
Q ss_pred EEEECHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHH-H--------HHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHH
Q ss_conf 04444178768999999866769-99999807786799-9--------99886420267766654323386799984456
Q gi|254780606|r 469 PVVTNPKKAVMALKWAVREMEER-YRKMSHLSVRNIKS-Y--------NERISTMYGEKPQGCGDDMRPMPYIVIIVDEM 538 (744)
Q Consensus 469 ~v~~~~~~~~~~l~~~~~em~~r-~~~~~~~~~~~i~~-~--------n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~ 538 (744)
.+..+.........+-..+..+| .+++...|..+... | .+|+...+.- -.-|.| ++.||=
T Consensus 98 tv~~nv~~~l~~~~~~~~~~~~r~~~lL~~vgL~~~~~~yP~eLSGGq~QRVaIARAL---------~~~P~l-llaDEP 167 (233)
T cd03258 98 TVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARAL---------ANNPKV-LLCDEA 167 (233)
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHH---------HCCCCE-EEECCC
T ss_conf 3999999999974999999999999999867991676269652677888999999998---------339989-996597
Q ss_pred H-HHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEE
Q ss_conf 8-7675310358999999999642013589998516544441467885056305720
Q gi|254780606|r 539 A-DLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQ 594 (744)
Q Consensus 539 a-~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~ 594 (744)
. .|-.....++.+ -|..+-+..|+-+|+.|--.. ++ ..+..||++-
T Consensus 168 Ts~LD~~~~~~il~---ll~~l~~e~g~t~i~vTHDl~--~~-----~~~adrv~vm 214 (233)
T cd03258 168 TSALDPETTQSILA---LLRDINRELGLTIVLITHEME--VV-----KRICDRVAVM 214 (233)
T ss_pred CCCCCHHHHHHHHH---HHHHHHHHHCCEEEEECCCHH--HH-----HHHCCEEEEE
T ss_conf 66469889999999---999999972989999898999--99-----9869979999
No 93
>PRK08760 replicative DNA helicase; Provisional
Probab=96.46 E-value=0.028 Score=34.63 Aligned_cols=148 Identities=17% Similarity=0.190 Sum_probs=73.0
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECC-------CCCCCC--EEEEEEECHHHHHH
Q ss_conf 011484699707875344799999999998568011079997234210001-------257752--00004444178768
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSV-------YDGIPH--LLTPVVTNPKKAVM 479 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~-------~~~~ph--~~~~v~~~~~~~~~ 479 (744)
|...--++|||.+|+|||.|..+|....+.+... ..+++-.-|..-.. -.++++ +...-.++.++ .
T Consensus 226 l~~G~LiViaaRPsmGKTalalnia~~~A~~~~~---~V~~fSLEMs~~ql~~Rlls~~s~v~~~~i~~g~l~~~e~--~ 300 (476)
T PRK08760 226 LQPTDLIILAARPAMGKTTFALNIAEYAAIKSKK---GVAVFSMEMSASQLAMRLISSNGRINAQRLRTGALEDEDW--A 300 (476)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC---CEEEEECCCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHH--H
T ss_conf 9877779998778874789999999999983799---7899703699999999999983389767776489999999--9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC------HHHHHHH
Q ss_conf 9999998667699999980778679999988642026776665432338679998445687675310------3589999
Q gi|254780606|r 480 ALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG------KEIEGAI 553 (744)
Q Consensus 480 ~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~------~~~e~~~ 553 (744)
.+..+..+|...--.+.....-++.....+.+...... . + =+||||=+. ||...+ .++...-
T Consensus 301 ~~~~a~~~l~~~~l~idD~~~~t~~~ir~~~R~~k~~~------~---l--~lvvIDYLq-L~~~~~~~~~r~~~v~~is 368 (476)
T PRK08760 301 RVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKREH------D---L--GLIVIDYLQ-LMSVPGNSENRATEISEIS 368 (476)
T ss_pred HHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHC------C---C--CEEEEEHHH-HCCCCCCCCCHHHHHHHHH
T ss_conf 99999999860881685799999999999999998727------9---9--879997076-4158888744889999999
Q ss_pred HHHHHHHHCCEEEEEEEECC
Q ss_conf 99999642013589998516
Q gi|254780606|r 554 QRLAQMARAAGIHLIMATQR 573 (744)
Q Consensus 554 ~~la~~~ra~GihlilatQr 573 (744)
..|-.+|+.++|.+|+..|=
T Consensus 369 r~lK~lAkel~vpVi~LsQL 388 (476)
T PRK08760 369 RSLKGLAKELNVPVIALSQL 388 (476)
T ss_pred HHHHHHHHHHCCCEEEECCC
T ss_conf 99999999979978996315
No 94
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.42 E-value=0.029 Score=34.52 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=21.3
Q ss_pred EEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 3211201148469970787534479999999999
Q gi|254780606|r 404 SVIADLANMPHILVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 404 ~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
-+-+++.+.--+-|+|.-|||||+++++ |++|+
T Consensus 302 ~vs~~v~~GEi~gi~G~nGsGKsTL~k~-l~Gl~ 334 (520)
T TIGR03269 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKI-IAGVL 334 (520)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHH-HHCCC
T ss_conf 2068972896899987888878999999-94887
No 95
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.41 E-value=0.022 Score=35.39 Aligned_cols=207 Identities=18% Similarity=0.258 Sum_probs=93.6
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE--ECCCCC-EE--------CCCCCCC-CEEEEEE-
Q ss_conf 211201148469970787534479999999999856801107999--723421-00--------0125775-2000044-
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM--VDPKML-EL--------SVYDGIP-HLLTPVV- 471 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l--iD~k~~-~~--------~~~~~~p-h~~~~v~- 471 (744)
+-+++.+.-.+.|.|.+|||||++++. |.+|+ .|+.=++++ .|.+.. .+ ..|++.- +++...+
T Consensus 21 vsl~i~~Ge~vaiiG~nGsGKSTL~~~-l~Gll---~P~~G~I~v~G~d~~~~~~~~~~r~~ig~vfQ~p~~q~~~~tV~ 96 (274)
T PRK13644 21 INLVIKKGEYIGIIGKNGSGKSTLALH-LNGLL---RPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVE 96 (274)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCCEEEECCEECCCCHHHHHHHHHEEEEEECCCCCCCCCCHH
T ss_conf 177984899999999999809999999-97068---58887299999987870567999873179965821103615199
Q ss_pred ECHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHH-
Q ss_conf 441787689999998667699-9999807786799---------99988642026776665432338679998445687-
Q gi|254780606|r 472 TNPKKAVMALKWAVREMEERY-RKMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMAD- 540 (744)
Q Consensus 472 ~~~~~~~~~l~~~~~em~~r~-~~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~- 540 (744)
.+.......+.+-..|+.+|. +.++..|..+... -.+|++-... +..-|. +++.||=..
T Consensus 97 e~iafg~~~~~l~~~e~~~~v~~aL~~~gl~~~~~~~p~~LSGGqkQRvaiA~a---------La~~P~-iLiLDEPTs~ 166 (274)
T PRK13644 97 EDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGI---------LTMEPE-CLIFDEVTSM 166 (274)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHH---------HHHCCC-EEEEECCCCC
T ss_conf 999621976699999999999999998596877628911099769999999999---------982999-9999798667
Q ss_pred HHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCCCCEE
Q ss_conf 67531035899999999964201358999851654444146788505630572036811100326763168856898468
Q gi|254780606|r 541 LMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDML 620 (744)
Q Consensus 541 l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~gd~l 620 (744)
|-.....++...+.+|.+ .|.-+|+.|.+.+ .++ + --||.+=- +-++|.+. -.+.++.+-+ |
T Consensus 167 LD~~~~~~i~~~l~~L~~----~g~TvI~itHdl~------~~~-~-aDrvivl~----~G~Iv~~G-~p~eif~~~~-l 228 (274)
T PRK13644 167 LDPDSGIAVLERIKKLHE----KGKTIVYITHNLE------ELH-D-ADRIIVMD----RGKIVLEG-EPENVLSDVS-L 228 (274)
T ss_pred CCHHHHHHHHHHHHHHHH----CCCEEEEEEECHH------HHH-C-CCEEEEEE----CCEEEEEC-CHHHHHCCHH-H
T ss_conf 899999999999999986----8999999833789------997-1-99899998----99999987-9899848962-8
Q ss_pred EECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
Q ss_conf 6468984389993438988999999999840887
Q gi|254780606|r 621 YMSGGGRIQRVHGPLVSDIEIEKVVQHLKKQGCP 654 (744)
Q Consensus 621 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 654 (744)
+..-+....+-++...++.+|-+
T Consensus 229 -----------~~~~l~~P~~~~~~~~L~~~g~~ 251 (274)
T PRK13644 229 -----------QTLGLTPPSLIELAENLKMHGVV 251 (274)
T ss_pred -----------HHCCCCCCHHHHHHHHHHHCCCC
T ss_conf -----------87699998499999999976998
No 96
>PRK07263 consensus
Probab=96.39 E-value=0.034 Score=34.01 Aligned_cols=152 Identities=15% Similarity=0.131 Sum_probs=75.8
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCC-------CCCC--CEEEEEEECHHHHHH
Q ss_conf 0114846997078753447999999999985680110799972342100012-------5775--200004444178768
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVY-------DGIP--HLLTPVVTNPKKAVM 479 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~-------~~~p--h~~~~v~~~~~~~~~ 479 (744)
|.+.--++|||.+|+|||.|..+|+..++.++ ....+++-.-|..-... .+++ ++...-.++.++ .
T Consensus 200 l~~GdLiviaaRPsmGKTa~alnia~~iA~~~---~~~V~~fSlEMs~~ql~~R~la~~~~i~~~~i~~g~l~~~e~--~ 274 (453)
T PRK07263 200 LHPDQLIILAARPAVGKTAFVLNIAQNVGTKQ---KKTVAIFSLEMGAESLVDRMLAAEGMVDSHSLRTGQLTDQDW--N 274 (453)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC---CCEEEEEECCCCHHHHHHHHHHHHCCCCHHCCCCCCCCHHHH--H
T ss_conf 99786899972788847899999999999855---982899924699899999999986173310331365247999--9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC-----HHHHHHHH
Q ss_conf 9999998667699999980778679999988642026776665432338679998445687675310-----35899999
Q gi|254780606|r 480 ALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG-----KEIEGAIQ 554 (744)
Q Consensus 480 ~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~-----~~~e~~~~ 554 (744)
.+..+..+|...--.+.....-++.....+.+........ . -=+||||=+. ||...+ .++...-.
T Consensus 275 ~~~~a~~~l~~~~l~idd~~~~~i~~i~~~~r~~~~~~~~----~-----l~livIDYlq-Li~~~~~~~r~~ev~~isr 344 (453)
T PRK07263 275 NVTIAQGALAEAPIYIDDTPGIKITEIRARSRKLSQEVDG----G-----LGLIVIDYLQ-LITGTKPENRQQEVSDISR 344 (453)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC----C-----CCEEEEEHHH-HCCCCCCCCHHHHHHHHHH
T ss_conf 9999998740685899789999989999999999986058----9-----8689973676-4468885359999999999
Q ss_pred HHHHHHHCCEEEEEEEECCCC
Q ss_conf 999964201358999851654
Q gi|254780606|r 555 RLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 555 ~la~~~ra~GihlilatQrp~ 575 (744)
.|-.+|+-++|.+|+.+|=-.
T Consensus 345 ~lK~lAkel~ipvi~lsQLnR 365 (453)
T PRK07263 345 QLKILAKELKVPVIALSQLSR 365 (453)
T ss_pred HHHHHHHHHCCCEEEECCCCC
T ss_conf 999999987997999743684
No 97
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.39 E-value=0.026 Score=34.87 Aligned_cols=38 Identities=29% Similarity=0.431 Sum_probs=25.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECC
Q ss_conf 8469970787534479999999999856801107999723
Q gi|254780606|r 413 PHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDP 452 (744)
Q Consensus 413 PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~ 452 (744)
-+++|.+.||||||.+.-.++..++.+.. .-+.+++=|
T Consensus 25 ~~~~i~~~tGsGKT~~~~~~~~~~~~~~~--~~~~li~~P 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGK--GKRVLVLVP 62 (201)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCC--CCEEEEEEC
T ss_conf 98899899996099999999999863389--975999908
No 98
>PRK06749 replicative DNA helicase; Provisional
Probab=96.38 E-value=0.039 Score=33.66 Aligned_cols=151 Identities=14% Similarity=0.123 Sum_probs=73.3
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCC-------CCCCC--EEEE--EEECHHHH
Q ss_conf 0114846997078753447999999999985680110799972342100012-------57752--0000--44441787
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVY-------DGIPH--LLTP--VVTNPKKA 477 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~-------~~~ph--~~~~--v~~~~~~~ 477 (744)
|...--++|||.+|+|||.|...|....+..+. ...++-.-|..-... .+++. +..+ ..++.++
T Consensus 183 l~~g~LiviaaRPsmGKTa~alnia~~~a~~g~----~v~~fSlEMs~~~l~~R~ls~~s~v~~~~i~~~~~~~~~~~~- 257 (428)
T PRK06749 183 LQEGDFVVLGARPSMGKTAFALNVGLHAAKSGA----AVGLFSLEMSSKQLLKRMASCVGEVSGGRLKNPKHRFAMEDW- 257 (428)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC----CEEEEECCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHH-
T ss_conf 998868999627989768999999999996499----279983789999999999997549988886277677999999-
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC-------HHHH
Q ss_conf 689999998667699999980778679999988642026776665432338679998445687675310-------3589
Q gi|254780606|r 478 VMALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG-------KEIE 550 (744)
Q Consensus 478 ~~~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~-------~~~e 550 (744)
..+..++.+|...--.+......++.....+.+...... + .-..+||||=+. ||...+ .++.
T Consensus 258 -~~~~~a~~~l~~~~l~i~d~~~~ti~~i~~~~r~~~~~~----g-----~~~~livIDYlq-Li~~~~~~~~~r~~ev~ 326 (428)
T PRK06749 258 -EKVSKAFAEIGELPLEIYDNAGVTVQDIWMQTRKLKRKH----G-----DKKVLIIVDYLQ-LITGDPKHKGNRFQEIS 326 (428)
T ss_pred -HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHC----C-----CCCEEEEEEHHH-HCCCCCCCCCCHHHHHH
T ss_conf -999999999855965997589976799999999999974----9-----987699976776-50578777778999999
Q ss_pred HHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 9999999964201358999851654
Q gi|254780606|r 551 GAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 551 ~~~~~la~~~ra~GihlilatQrp~ 575 (744)
..-..|-.+|+-++|.+|+.+|=-.
T Consensus 327 ~isr~lK~lAkel~vpvi~lsQLnR 351 (428)
T PRK06749 327 EISRKLKLLARELNVCVVALSQLSR 351 (428)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 9999999999996998999713785
No 99
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.38 E-value=0.014 Score=36.77 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=23.3
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 2112011484699707875344799999999
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMS 435 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~s 435 (744)
+-+++.+.-.+-|.|.-|||||++++.| ++
T Consensus 279 vs~~v~~GE~~~i~G~nGsGKSTLl~~l-~G 308 (490)
T PRK10938 279 LSWQVNPGEHWQIVGPNGAGKSTLLSLI-TG 308 (490)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHH-HC
T ss_conf 5789838988999867888799999998-08
No 100
>PRK05748 replicative DNA helicase; Provisional
Probab=96.37 E-value=0.031 Score=34.30 Aligned_cols=150 Identities=17% Similarity=0.171 Sum_probs=71.6
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEEC-------CCCCCCC--EEEEEEECHHHHHH
Q ss_conf 01148469970787534479999999999856801107999723421000-------1257752--00004444178768
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELS-------VYDGIPH--LLTPVVTNPKKAVM 479 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~-------~~~~~ph--~~~~v~~~~~~~~~ 479 (744)
|.+.--++|||.+|+|||.|...|+..++.+.. ...+++-.-|..-. ...+++. +...-.++.++ .
T Consensus 200 ~~~g~LiviaaRP~mGKTa~alnia~~~a~~~~---~~v~~fSlEM~~~~l~~R~la~~s~v~~~~i~~g~l~~~~~--~ 274 (448)
T PRK05748 200 LQPNDLIIVAARPSVGKTAFALNIAQNVATKTD---KNVAIFSLEMGAESLVMRMLCAEGRIDQQKLRTGQLTDEDW--P 274 (448)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC---CEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHCCCCCHHHH--H
T ss_conf 886737999847998768999999999998569---80899817788889999999997467777776289999999--9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC-------HHHHHH
Q ss_conf 9999998667699999980778679999988642026776665432338679998445687675310-------358999
Q gi|254780606|r 480 ALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG-------KEIEGA 552 (744)
Q Consensus 480 ~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~-------~~~e~~ 552 (744)
.+..++.+|...--.+.....-++.....+........ . . .=+||||=+. ||...+ .++...
T Consensus 275 ~~~~a~~~l~~~~l~i~d~~~~ti~~i~~~~r~~~~~~-----~---~--~~~vviDYlq-li~~~~~~~~~r~~ev~~i 343 (448)
T PRK05748 275 KLTIAVGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEH-----G---G--LGLIVIDYLQ-LIQGSGRSGENRQQEVSEI 343 (448)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHC-----C---C--CCEEEEEHHH-HCCCCCCCCCCHHHHHHHH
T ss_conf 99999999865983785589886899999999999975-----9---9--8899971686-4477787764399999999
Q ss_pred HHHHHHHHHCCEEEEEEEECCC
Q ss_conf 9999996420135899985165
Q gi|254780606|r 553 IQRLAQMARAAGIHLIMATQRP 574 (744)
Q Consensus 553 ~~~la~~~ra~GihlilatQrp 574 (744)
-..|-++|+.++|.+|+..|=-
T Consensus 344 sr~lK~lAkel~ipvi~lsQLn 365 (448)
T PRK05748 344 SRSLKALAKELKVPVIALSQLS 365 (448)
T ss_pred HHHHHHHHHHHCCCEEEECCCC
T ss_conf 9999999999699889970268
No 101
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.36 E-value=0.013 Score=36.83 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=26.0
Q ss_pred CHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCH
Q ss_conf 20114846997078753447999999999985680
Q gi|254780606|r 408 DLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRP 442 (744)
Q Consensus 408 dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p 442 (744)
++.+.-.++|-|.-|||||++|+++.+-++.....
T Consensus 17 ~l~~g~~~iItGpN~sGKSt~Lr~i~l~~~~a~~~ 51 (162)
T cd03227 17 TFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSA 51 (162)
T ss_pred ECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 60898689998998775799999999999986326
No 102
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.35 E-value=0.038 Score=33.68 Aligned_cols=134 Identities=17% Similarity=0.210 Sum_probs=76.1
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46997078753447999999999985680110799972342100012577520000444417876899999986676999
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEERYR 493 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r~~ 493 (744)
-++|-|.-.||||++|+++-+..++.+.-- .+--|..++..|+.+- + -+.+.+.....+-....||.+-..
T Consensus 33 ~~iiTGpN~~GKSt~lk~i~l~~ilaq~G~-----~vpa~~~~~~~~d~i~---~-~i~~~d~~~~~~StF~~e~~~~~~ 103 (222)
T cd03287 33 CQIITGPNMGGKSSYIRQVALITIMAQIGS-----FVPASSATLSIFDSVL---T-RMGASDSIQHGMSTFMVELSETSH 103 (222)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCC-----CCCHHHCEEECCCEEE---E-ECCCCCHHHCCCCHHHHHHHHHHH
T ss_conf 899978998872899999999999997267-----7214563996357599---9-506786234452279999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHH-HHHHHHHHHCCEEEEEEEEC
Q ss_conf 99980778679999988642026776665432338679998445687675310358999-99999964201358999851
Q gi|254780606|r 494 KMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGA-IQRLAQMARAAGIHLIMATQ 572 (744)
Q Consensus 494 ~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~-~~~la~~~ra~GihlilatQ 572 (744)
.+.... ..-+|++||+.. -+...|-... ..-|-.+.+--|.+.|++|-
T Consensus 104 il~~~~-----------------------------~~sLvliDEl~~--GT~~~eg~ala~aile~l~~~~~~~~i~tTH 152 (222)
T cd03287 104 ILSNCT-----------------------------SRSLVILDELGR--GTSTHDGIAIAYATLHYLLEEKKCLVLFVTH 152 (222)
T ss_pred HHHHCC-----------------------------CCCEEEECCCCC--CCCHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 998678-----------------------------875442322468--9983577999999999998605889999476
Q ss_pred CCCCCCCHHHHHHCCCCEE
Q ss_conf 6544441467885056305
Q gi|254780606|r 573 RPSVDVITGTIKANFPIRI 591 (744)
Q Consensus 573 rp~~~vi~~~ik~n~~~ri 591 (744)
... |.. +..+.+.++
T Consensus 153 ~~~---L~~-l~~~~~~~v 167 (222)
T cd03287 153 YPS---LGE-ILRRFEGSI 167 (222)
T ss_pred CHH---HHH-HHHHCCCCE
T ss_conf 278---999-987587845
No 103
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.34 E-value=0.068 Score=31.98 Aligned_cols=134 Identities=16% Similarity=0.212 Sum_probs=64.9
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHH
Q ss_conf 14846997078753447999999999985680110799972342100012577520000444417876899999986676
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEE 490 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~ 490 (744)
.-+-.+|.|..|.|||..+..||.-|+..+.-..+++.|.= -..+|+.-|......--.
T Consensus 161 ~~~~~vIsGGPGTGKTttV~~lLa~l~~~~~~~~l~I~LaA---------------------PTGKAAaRL~Esi~~~~~ 219 (607)
T PRK10875 161 TRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAA---------------------PTGKAAARLTESLGKALR 219 (607)
T ss_pred HCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEC---------------------CHHHHHHHHHHHHHHHHH
T ss_conf 55778996799987788999999999996458997089988---------------------228999999999987875
Q ss_pred HHHHH----HH--CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCE
Q ss_conf 99999----98--0778679999988642026776665432338679998445687675310358999999999642013
Q gi|254780606|r 491 RYRKM----SH--LSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAG 564 (744)
Q Consensus 491 r~~~~----~~--~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~G 564 (744)
+..+. .. .....|+.. -.......+-......|||+=||||||... .+. . ++.+|-+ +=.-+
T Consensus 220 ~l~~~~~~~~~~p~~a~TiHRL----Lg~~p~~~~f~~~~~nPL~~DvlIVDEASM--VDl-~----Lm~~LL~-Alp~~ 287 (607)
T PRK10875 220 QLPLTDEQKKRIPEDASTLHRL----LGAQPGSQRLRYHAGNPLHLDVLVVDEASM--IDL-P----MMSRLID-ALPDH 287 (607)
T ss_pred HCCCCHHHHHCCCCCCEEHHHH----CCCCCCCCCCCCCCCCCCCCCEEEEECCHH--HHH-H----HHHHHHH-HCCCC
T ss_conf 3476656663376556658975----296789876565779999889899907336--659-9----9999998-28999
Q ss_pred EEEEEE---ECCCCCC
Q ss_conf 589998---5165444
Q gi|254780606|r 565 IHLIMA---TQRPSVD 577 (744)
Q Consensus 565 ihlila---tQrp~~~ 577 (744)
-+|||- -|=||++
T Consensus 288 aRLILvGD~dQLpSVg 303 (607)
T PRK10875 288 ARVIFLGDRDQLASVE 303 (607)
T ss_pred CEEEEECCHHHCCCCC
T ss_conf 8899965623247888
No 104
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.30 E-value=0.041 Score=33.48 Aligned_cols=165 Identities=20% Similarity=0.325 Sum_probs=82.8
Q ss_pred CEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC------------CCEECCCCCCCCEEEEE
Q ss_conf 732112011484699707875344799999999998568011079997234------------21000125775200004
Q gi|254780606|r 403 ESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK------------MLELSVYDGIPHLLTPV 470 (744)
Q Consensus 403 ~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k------------~~~~~~~~~~ph~~~~v 470 (744)
+.+-+++.+.--+-|-|-+|||||++|+. |.+| ..|+.=+++ +|-+ +.-|-.|.-.||+- |
T Consensus 17 ~~vsl~v~~Ge~~~iiGpSGsGKSTllr~-i~Gl---~~p~~G~I~-~~g~~v~~~~~~~r~ig~VfQ~~~Lfp~lt--V 89 (232)
T cd03300 17 DGVSLDIKEGEFFTLLGPSGCGKTTLLRL-IAGF---ETPTSGEIL-LDGKDITNLPPHKRPVNTVFQNYALFPHLT--V 89 (232)
T ss_pred CCCEEEECCCCEEEEECCCCCHHHHHHHH-HHCC---CCCCCEEEE-ECCEECCCCCHHHCCEEEEECCCCCCCCCC--H
T ss_conf 76174887998999999999839999999-9779---999853999-999999999954577569914885477891--9
Q ss_pred EECHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHH-HH
Q ss_conf 4441787689999998667699-9999807786799---------99988642026776665432338679998445-68
Q gi|254780606|r 471 VTNPKKAVMALKWAVREMEERY-RKMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDE-MA 539 (744)
Q Consensus 471 ~~~~~~~~~~l~~~~~em~~r~-~~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE-~a 539 (744)
..|........++-..|.++|. +++...+..+... -.+|++-.+.- ..-|. +++.|| ++
T Consensus 90 ~~Nva~~l~~~~~~~~e~~~rv~e~l~~v~l~~~~~~~p~~LSGGqkQRVaiARAl---------~~~P~-llllDEP~s 159 (232)
T cd03300 90 FENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARAL---------VNEPK-VLLLDEPLG 159 (232)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHH---------HCCCC-EEEECCCCC
T ss_conf 99987799876999999999999998758977876199666998999999999998---------65999-999808876
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEE
Q ss_conf 7675310358999999999642013589998516544441467885056305720
Q gi|254780606|r 540 DLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQ 594 (744)
Q Consensus 540 ~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~ 594 (744)
.|--.... .....|-+.-+..|+-+|+.|-.++ ++. .+.-||++-
T Consensus 160 ~LD~~~~~---~i~~~l~~l~~~~~~T~i~VTHd~~-ea~------~ladri~vm 204 (232)
T cd03300 160 ALDLKLRK---DMQLELKRLQKELGITFVFVTHDQE-EAL------TMSDRIAVM 204 (232)
T ss_pred CCCHHHHH---HHHHHHHHHHHHHCCEEEEECCCHH-HHH------HHCCEEEEE
T ss_conf 46999999---9999999999985999999999999-999------969999999
No 105
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=96.29 E-value=0.07 Score=31.88 Aligned_cols=61 Identities=25% Similarity=0.429 Sum_probs=33.5
Q ss_pred EEEEHHHHHHHHHHCCH-------H-HHHHHHHHHHH-HHCCEEEEEEEECCCCCCCCHHHH-HHCCCCEEEE
Q ss_conf 99984456876753103-------5-89999999996-420135899985165444414678-8505630572
Q gi|254780606|r 531 IVIIVDEMADLMMVAGK-------E-IEGAIQRLAQM-ARAAGIHLIMATQRPSVDVITGTI-KANFPIRISF 593 (744)
Q Consensus 531 ivvviDE~a~l~~~~~~-------~-~e~~~~~la~~-~ra~GihlilatQrp~~~vi~~~i-k~n~~~ri~~ 593 (744)
-|++|||+-.+...... . +...+..|-.. ...-+|.+|.+|.+|+ -|...+ |.-|..+|-|
T Consensus 59 ~Il~iDe~d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~~I~tTN~~~--~ld~al~r~Rfd~~i~~ 129 (131)
T pfam00004 59 CVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSLSKVIVIAATNRPD--KLDPALLRGRFDRIIEF 129 (131)
T ss_pred CEEEECHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHH--HCCHHHHCCCCEEEEEE
T ss_conf 189831167775167888887513268789999850224688769999759904--49977962833289980
No 106
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.29 E-value=0.03 Score=34.37 Aligned_cols=151 Identities=16% Similarity=0.181 Sum_probs=74.8
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCC-------CCCCC--EEEEEEECHHHHHH
Q ss_conf 0114846997078753447999999999985680110799972342100012-------57752--00004444178768
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVY-------DGIPH--LLTPVVTNPKKAVM 479 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~-------~~~ph--~~~~v~~~~~~~~~ 479 (744)
|.+.--.+|||.+|+|||.|..+|...++.+. ....+++-.-|.+-... .+++. +..+-.++.+ ..
T Consensus 191 l~~g~LiIiaARPsmGKTafalnia~n~A~~~---g~~Vl~fSLEMs~eql~~R~la~~s~i~~~~i~~g~l~~~~--~~ 265 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALRE---GKPVLFFSLEMSAEQLGERLLASKSGINTGNIRTGRFNDSD--FN 265 (421)
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHC---CCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHH--HH
T ss_conf 99886899985467874599999999999866---98389992579999999999998548977666528999899--99
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC-----HHHHHHHH
Q ss_conf 9999998667699999980778679999988642026776665432338679998445687675310-----35899999
Q gi|254780606|r 480 ALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG-----KEIEGAIQ 554 (744)
Q Consensus 480 ~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~-----~~~e~~~~ 554 (744)
.+..++.+|...--.+.....-++.....+.+....... .+ =+||||=+. ||.... .++...-.
T Consensus 266 ~~~~a~~~l~~~~l~i~d~~~~ti~~ir~~~r~~~~~~~--------~l--~livIDYLq-Li~~~~~~~r~~ei~~Isr 334 (421)
T TIGR03600 266 RLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKG--------GL--DLIVVDYIQ-LMAPTRGRDRNEELGGISR 334 (421)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCC--------CC--CEEEECHHH-HCCCCCCCCHHHHHHHHHH
T ss_conf 999999986168789966998876789999999998628--------98--699975786-5378888888999999999
Q ss_pred HHHHHHHCCEEEEEEEECCCC
Q ss_conf 999964201358999851654
Q gi|254780606|r 555 RLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 555 ~la~~~ra~GihlilatQrp~ 575 (744)
.|-.+|+.++|.+|+.+|==.
T Consensus 335 ~LK~lAkel~ipVi~lsQLnR 355 (421)
T TIGR03600 335 GLKALAKELDVPVVLLAQLNR 355 (421)
T ss_pred HHHHHHHHHCCCEEEECCCCC
T ss_conf 999999997997899705786
No 107
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.29 E-value=0.0028 Score=41.49 Aligned_cols=86 Identities=28% Similarity=0.341 Sum_probs=49.1
Q ss_pred ECCCCCCCEEEHHHHHCCHHHCCCCCCEEEEEEECCCCCEEECCHHHCCCE--EEEECCCCCHHHHHHHHHHHHHHHCCH
Q ss_conf 268888870765875128121146783689842057887321120114846--997078753447999999999985680
Q gi|254780606|r 365 ELPNETRETVYLRQIIESRSFSHSKANLALCLGKTISGESVIADLANMPHI--LVAGTTGSGKSVAINTMIMSLLYRLRP 442 (744)
Q Consensus 365 ~~p~~~~~~v~~~~~~~~~~~~~~~~~l~~~~g~~~~g~~~~~dl~~~PH~--lvaG~TgsGKS~~l~~~i~sl~~~~~p 442 (744)
.+|...-+.|.+|=+-.... .-.-. -||.+-.-.-.+..+.+.||. ||.|.||||||+.|.+++..| +++
T Consensus 214 tlP~~~GEkvVlRil~~~~~-~l~l~----~Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~l---n~~ 285 (500)
T COG2804 214 TLPTFYGEKVVLRILDKDQV-ILDLE----KLGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSEL---NTP 285 (500)
T ss_pred CCCCCCCCEEEEEEECCCCC-CCCHH----HHCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHH---CCC
T ss_conf 57887785789998333124-68887----83899889999999972897089996899998899999999986---278
Q ss_pred HHEEEEEECCCCCEEC
Q ss_conf 1107999723421000
Q gi|254780606|r 443 DECRMIMVDPKMLELS 458 (744)
Q Consensus 443 ~~~~~~liD~k~~~~~ 458 (744)
+..=+-+=||=...+.
T Consensus 286 ~~nI~TiEDPVE~~~~ 301 (500)
T COG2804 286 ERNIITIEDPVEYQLP 301 (500)
T ss_pred CCEEEEEECCEEEECC
T ss_conf 8508984078045159
No 108
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=96.28 E-value=0.048 Score=33.02 Aligned_cols=53 Identities=23% Similarity=0.464 Sum_probs=32.3
Q ss_pred CCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE--ECCCCCEEC
Q ss_conf 87321120----1148469970787534479999999999856801107999--723421000
Q gi|254780606|r 402 GESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM--VDPKMLELS 458 (744)
Q Consensus 402 g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l--iD~k~~~~~ 458 (744)
+++++-|+ .+.-.+.|.|.||||||++++.+. .-+.|++=++.+ +|-+.....
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~----r~~~~~~G~I~idg~dI~~i~~~ 399 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLL----RLYDPTSGEILIDGIDIRDISLD 399 (567)
T ss_pred CCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHH----HHCCCCCCEEEECCEEHHHCCHH
T ss_conf 876110522775489878885588885789999998----61588883698999977753856
No 109
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=96.28 E-value=0.017 Score=36.05 Aligned_cols=34 Identities=18% Similarity=0.416 Sum_probs=26.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEE
Q ss_conf 4699707875344799999999998568011079
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRM 447 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~ 447 (744)
.++|-|..|+|||++++-++..++....+...++
T Consensus 2 ~i~i~G~aG~GKTtll~kl~~~wa~g~~~~~~~~ 35 (165)
T pfam05729 2 TVILQGEAGSGKTTLLQKLALLWAQGKLPQDFDF 35 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 8999827989899999999999986984369728
No 110
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.27 E-value=0.031 Score=34.28 Aligned_cols=165 Identities=18% Similarity=0.244 Sum_probs=73.8
Q ss_pred HHCCC-EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEE--CCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 11484-699707875344799999999998568011079997--234210001257752000044441787689999998
Q gi|254780606|r 410 ANMPH-ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMV--DPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVR 486 (744)
Q Consensus 410 ~~~PH-~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~li--D~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~ 486 (744)
.++|| .|..|--|.||+.+-+.+...|+-...+......+. |+..........--|.-.-.+. +
T Consensus 42 gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~~~~~~~~~~~~~pd~~~~~~r~i~~g~hpdl~~i~-------------r 108 (352)
T PRK09112 42 GRLHHALLFEGPEGIGKATLAFHLANHILSHPDPNEAPETLADPDPASPLWRQIAQGAHPNLLHLT-------------R 108 (352)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE-------------C
T ss_conf 996524653589980899999999999866998666865567888787789999748999956553-------------4
Q ss_pred HHHHH-HHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEE
Q ss_conf 66769-99999807786799999886420267766654323386799984456876753103589999999996420135
Q gi|254780606|r 487 EMEER-YRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGI 565 (744)
Q Consensus 487 em~~r-~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gi 565 (744)
.++.+ .+.-...++..|......+... .. .=.|-|+||||.-+|... ....+-++--.- ....
T Consensus 109 ~~d~k~~~~~~~I~vd~iR~l~~~~~~~---~~--------~~~~kv~Iid~ad~m~~~----aaNALLK~LEEP-p~~~ 172 (352)
T PRK09112 109 PFDEKTGKFKTAITVDEIRRVTHFLSQT---SG--------DGNWRIVIIDPADDMNRN----AANAILKTLEEP-PARA 172 (352)
T ss_pred CCCHHHHHHHCCCCHHHHHHHHHHHCCC---CC--------CCCEEEEEECCHHHHHHH----HHHHHHHHHHCC-CCCE
T ss_conf 3220214543357779999999984548---86--------688069998187874699----999999985348-9874
Q ss_pred EEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCC
Q ss_conf 89998516544441467885056305720368111003267
Q gi|254780606|r 566 HLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILG 606 (744)
Q Consensus 566 hlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~ 606 (744)
.+||.|..|. .+++ .|+.-. -++-|+--+..|=...|.
T Consensus 173 ~fiLit~~~~-~ll~-TI~SRC-q~~~f~pL~~~di~~~L~ 210 (352)
T PRK09112 173 LFILISHSSG-RLLP-TIRSRC-QPISLKPLDDDELKKALS 210 (352)
T ss_pred EEEEEECCHH-HCHH-HHHHHC-CCCCCCCCCHHHHHHHHH
T ss_conf 8998869977-7768-999743-321488939899999999
No 111
>KOG0060 consensus
Probab=96.25 E-value=0.056 Score=32.57 Aligned_cols=155 Identities=19% Similarity=0.284 Sum_probs=80.4
Q ss_pred CCCCEEECCHH----HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC-CCCCEEC---CCCCCC----CEE
Q ss_conf 78873211201----14846997078753447999999999985680110799972-3421000---125775----200
Q gi|254780606|r 400 ISGESVIADLA----NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD-PKMLELS---VYDGIP----HLL 467 (744)
Q Consensus 400 ~~g~~~~~dl~----~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD-~k~~~~~---~~~~~p----h~~ 467 (744)
-+|..++.||. ..-|+||.|-+|.|||.+++. +.+ ||...-..+.....- +|++-|- +|..+- +++
T Consensus 445 t~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRv-lgg-LWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvI 522 (659)
T KOG0060 445 TNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRV-LGG-LWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVI 522 (659)
T ss_pred CCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHH-HHC-CCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCHHHHEE
T ss_conf 998656321005705897599978998763689999-853-251678727605678877558836887766654455033
Q ss_pred EEEE--------ECHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHH----------HHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 0044--------441787689999998667699999980-77867999----------9988642026776665432338
Q gi|254780606|r 468 TPVV--------TNPKKAVMALKWAVREMEERYRKMSHL-SVRNIKSY----------NERISTMYGEKPQGCGDDMRPM 528 (744)
Q Consensus 468 ~~v~--------~~~~~~~~~l~~~~~em~~r~~~~~~~-~~~~i~~~----------n~~~~~~~~~~~~~~~~~~~~~ 528 (744)
.|.- -+.+...+.|.|+. |. .++.+. |...-..+ .+|.+-++.... -
T Consensus 523 YP~~~~~~~~~~~~d~~i~r~Le~v~--L~---hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~---------k 588 (659)
T KOG0060 523 YPLKAEDMDSKSASDEDILRILENVQ--LG---HLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYH---------K 588 (659)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHH--HH---HHHHHHCCCCCHHHCCHHHHCCHHHHHHHHHHHHHHC---------C
T ss_conf 25753221013776789999999854--55---5899857888222205776369888889999999860---------8
Q ss_pred CEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCC
Q ss_conf 6799984456876753103589999999996420135899985165444
Q gi|254780606|r 529 PYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVD 577 (744)
Q Consensus 529 p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~ 577 (744)
| -+.|.||.- .....++|. .+.++.|+.||-+|--.-|.+-.
T Consensus 589 P-k~AiLDE~T---SAv~~dvE~---~~Yr~~r~~giT~iSVgHRkSL~ 630 (659)
T KOG0060 589 P-KFAILDECT---SAVTEDVEG---ALYRKCREMGITFISVGHRKSLW 630 (659)
T ss_pred C-CEEEEECCH---HHCCHHHHH---HHHHHHHHCCCEEEEECCHHHHH
T ss_conf 8-368760302---223576799---99999998097699963578898
No 112
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.19 E-value=0.11 Score=30.56 Aligned_cols=247 Identities=23% Similarity=0.301 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEE-EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEE
Q ss_conf 7889988999999874035513898676489258-999754888639999859999998714776327751898345442
Q gi|254780606|r 287 HEILEKNAGSLETILEEFGIKGEIINVNPGPVVT-LYEFEPAPGIKSSRVIGLADDIARSMSSLSARVAVIPKRNAIGIE 365 (744)
Q Consensus 287 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gp~~~-~~~~~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~pg~~~~~~~ 365 (744)
...++.....|.+-++.+.-..-+++......=. ++=++-..|-+. +.+....+-+.+-.++.||+.-.-..+|.--
T Consensus 32 ~~~l~~~~~~l~~e~~~l~~~p~~vg~~~~~~~~~~~iv~~~~g~~~--~v~~~~~~~~~~l~pg~~V~l~~~~~~i~~~ 109 (390)
T PRK03992 32 NERLERELERLKSELEKLRTPPLIVATVLEVLDDGRVVVKSSTGPQF--VVTVSSFVDRDKLKPGARVALNQQTLAIVEV 109 (390)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEECCCCEE--EEECCCCCCHHHCCCCCEEEECCCCCEEEEE
T ss_conf 99999999999999998548994899999983797499997899879--9965787688887999989985353030564
Q ss_pred CCCCCCCEEEHHHHHCCHHHCCCCCCEEEEEEECCCC---------CEEECCH---------H-HCC-CEEEEECCCCCH
Q ss_conf 6888887076587512812114678368984205788---------7321120---------1-148-469970787534
Q gi|254780606|r 366 LPNETRETVYLRQIIESRSFSHSKANLALCLGKTISG---------ESVIADL---------A-NMP-HILVAGTTGSGK 425 (744)
Q Consensus 366 ~p~~~~~~v~~~~~~~~~~~~~~~~~l~~~~g~~~~g---------~~~~~dl---------~-~~P-H~lvaG~TgsGK 425 (744)
+|...-..|+.-++.+... ..+ .||.| +.|.+-| . +-| -+|..|-.|.||
T Consensus 110 l~~~~d~~v~~m~v~e~P~---v~~-------~dIGGl~~~k~el~E~velPl~~pe~f~~~Gi~pPkGvLLyGPPGtGK 179 (390)
T PRK03992 110 LPSEKDPRVRAMEVIESPD---VTY-------EDIGGLDEQIREVREAVELPLKNPELFEEVGIEPPKGVLLYGPPGTGK 179 (390)
T ss_pred CCCCCCCCCCCCCCCCCCC---CCH-------HHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCH
T ss_conf 6888786211042147999---984-------661498999999999999986598999976999997278689899978
Q ss_pred HHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCHH
Q ss_conf 4799999999998568011079997234210001257752000044441787689999998667699-999980778679
Q gi|254780606|r 426 SVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEERY-RKMSHLSVRNIK 504 (744)
Q Consensus 426 S~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r~-~~~~~~~~~~i~ 504 (744)
|.+-+++...+ .+.|+-++. .+| +...+ .|-++.. ++|..+
T Consensus 180 TllAkAvA~e~-------~~~fi~v~~--s~l---------~sk~v--------------Gesek~vr~lF~~A------ 221 (390)
T PRK03992 180 TLLAKAVAHET-------NATFIRVVG--SEL---------VQKFI--------------GEGARLVRELFELA------ 221 (390)
T ss_pred HHHHHHHHHHH-------CCCEEEEEH--HHH---------HHCCC--------------CHHHHHHHHHHHHH------
T ss_conf 99999999874-------888799667--997---------52454--------------17999999999999------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHC-------CHHHHHHH-HHHHHH---HHCCEEEEEEEECC
Q ss_conf 99998864202677666543233867999844568767531-------03589999-999996---42013589998516
Q gi|254780606|r 505 SYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVA-------GKEIEGAI-QRLAQM---ARAAGIHLIMATQR 573 (744)
Q Consensus 505 ~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~-------~~~~e~~~-~~la~~---~ra~GihlilatQr 573 (744)
+- .-| -||+|||+-.+...- ..++...+ +-|.++ ...-+|.+|.||.|
T Consensus 222 ----r~----------------~aP-~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emDG~~~~~~V~VIaATNr 280 (390)
T PRK03992 222 ----RE----------------KAP-SIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNR 280 (390)
T ss_pred ----HH----------------HCC-CEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
T ss_conf ----97----------------099-089714325663356778886208899999999997448777788279960698
Q ss_pred CCCCCCHHHHH--HCCCCEEEEECCCHHHCCHHCC
Q ss_conf 54444146788--5056305720368111003267
Q gi|254780606|r 574 PSVDVITGTIK--ANFPIRISFQVTSKIDSRTILG 606 (744)
Q Consensus 574 p~~~vi~~~ik--~n~~~ri~~~v~~~~dsr~il~ 606 (744)
|+ .|..-+. .-|..+|-|...+...-+.||.
T Consensus 281 pd--~LDpAllRpGRFDr~I~iplPd~~~R~~Ilk 313 (390)
T PRK03992 281 PD--ILDPALLRPGRFDRIIEVPLPDEEGRLEILK 313 (390)
T ss_pred CH--HCCHHHHCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 10--0597775477652388708949999999999
No 113
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.17 E-value=0.06 Score=32.37 Aligned_cols=165 Identities=14% Similarity=0.266 Sum_probs=85.5
Q ss_pred EEEEEEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC-----------CCEECCC
Q ss_conf 68984205788732112011484699707875344799999999998568011079997234-----------2100012
Q gi|254780606|r 392 LALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK-----------MLELSVY 460 (744)
Q Consensus 392 l~~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k-----------~~~~~~~ 460 (744)
|....|....=+-+-+++.+.--+-+-|-.|+|||++|+. |.+|. .|+.=++++-+-. +.-|-.|
T Consensus 12 lsk~yg~~~al~~vsl~i~~Ge~~~llGpSG~GKTTlLr~-iaGl~---~p~~G~I~~~g~~v~~~~~~~R~i~~VfQ~~ 87 (351)
T PRK11432 12 ITKRFGKNTVIDNLDLTIKQGTMVTLLGPSGCGKTTVLRL-VAGLE---KPTSGQIFIDGEDVTKRSIQQRDICMVFQSY 87 (351)
T ss_pred EEEEECCEEEECCCEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCEEEEECCEECCCCCHHHCCEEEEECCC
T ss_conf 7999899489844574988998999999996499999999-97699---9883699999999999995458869994488
Q ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf 57752000044441787689999998667699-9999807786799---------9998864202677666543233867
Q gi|254780606|r 461 DGIPHLLTPVVTNPKKAVMALKWAVREMEERY-RKMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPY 530 (744)
Q Consensus 461 ~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r~-~~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ 530 (744)
.-.||+- |..|........+.-..|..+|- +++...+..++.+ -.+|++-.+. +-.-|.
T Consensus 88 aLfPh~t--V~eNi~~~l~~~~~~~~e~~~rv~e~l~~v~L~~~~~r~P~~LSGGq~QRValARA---------L~~~P~ 156 (351)
T PRK11432 88 ALFPHMS--LGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARA---------LVLKPK 156 (351)
T ss_pred CCCCCCC--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHCCHHHHHHHHHHHH---------HHCCCC
T ss_conf 7676680--99999779987599999999999999976499661458955789989999999999---------844998
Q ss_pred EEEEHHH-HHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 9998445-68767531035899999999964201358999851654
Q gi|254780606|r 531 IVIIVDE-MADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 531 ivvviDE-~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
+ ++.|| |+.|- .+--+.+...|-++-+..|+-.|+.|--..
T Consensus 157 v-lLlDEP~s~LD---~~lR~~~~~~l~~l~~~~~~T~i~VTHD~~ 198 (351)
T PRK11432 157 V-LLFDEPLSNLD---ANLRRSMREKIRELQQQFNITSLYVTHDQS 198 (351)
T ss_pred E-EEECCCCCCCC---HHHHHHHHHHHHHHHHHHCCEEEEECCCHH
T ss_conf 9-99868754369---999999999999999986999999999989
No 114
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.16 E-value=0.016 Score=36.24 Aligned_cols=160 Identities=20% Similarity=0.332 Sum_probs=87.2
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC-------CC----CCEECCCCCCCCEEEEEEEC
Q ss_conf 21120114846997078753447999999999985680110799972-------34----21000125775200004444
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD-------PK----MLELSVYDGIPHLLTPVVTN 473 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD-------~k----~~~~~~~~~~ph~~~~v~~~ 473 (744)
+-+++.+.-.+.+-|-+|+|||++|+ ||.+|. .|+.=++++-| |+ ..-|-.|.-.||+- |.
T Consensus 22 i~l~i~~Gef~vllGPSGcGKSTlLr-~IAGLe---~p~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhMt--V~-- 93 (338)
T COG3839 22 VNLDIEDGEFVVLLGPSGCGKSTLLR-MIAGLE---EPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMT--VY-- 93 (338)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHH-HHHCCC---CCCCCEEEECCEECCCCCHHHCCEEEEECCCCCCCCCC--HH--
T ss_conf 26897479799998999888899999-996887---78871599999999989955788899937830157876--99--
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHCCCCCHHH------------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHH
Q ss_conf 17876899999---986676999999807786799------------999886420267766654323386799984456
Q gi|254780606|r 474 PKKAVMALKWA---VREMEERYRKMSHLSVRNIKS------------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDEM 538 (744)
Q Consensus 474 ~~~~~~~l~~~---~~em~~r~~~~~~~~~~~i~~------------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~ 538 (744)
+..+--|++. ..|.++|.+..++ .=+|.. ..+|++-.+.-. .-|.++ ..||=
T Consensus 94 -~Niaf~Lk~~~~~k~ei~~rV~eva~--~L~l~~lL~r~P~~LSGGQrQRVAlaRAlV---------r~P~v~-L~DEP 160 (338)
T COG3839 94 -ENIAFGLKLRGVPKAEIDKRVKEVAK--LLGLEHLLNRKPLQLSGGQRQRVALARALV---------RKPKVF-LLDEP 160 (338)
T ss_pred -HHHHHHHHHCCCCHHHHHHHHHHHHH--HCCCHHHHHCCCCCCCHHHHHHHHHHHHHH---------CCCCEE-EECCC
T ss_conf -97341664479956888999999998--739866773590117725678999987775---------478878-84476
Q ss_pred -HHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEEC
Q ss_conf -876753103589999999996420135899985165444414678850563057203
Q gi|254780606|r 539 -ADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQV 595 (744)
Q Consensus 539 -a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v 595 (744)
.-| ++ +--..+...|.++-+.+|+-.|..|.... +.+ .+.-||+.-.
T Consensus 161 lSnL--Da-klR~~mr~eik~l~~~l~~T~IYVTHDq~-EAm------tladri~Vm~ 208 (338)
T COG3839 161 LSNL--DA-KLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAM------TLADRIVVMN 208 (338)
T ss_pred HHHH--HH-HHHHHHHHHHHHHHHHCCCCEEEECCCHH-HHH------HHCCEEEEEE
T ss_conf 4676--59-99999999999999860984899808999-998------4088799996
No 115
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.16 E-value=0.038 Score=33.69 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=33.0
Q ss_pred EEEEEEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEE
Q ss_conf 68984205788732112011484699707875344799999999998568011079
Q gi|254780606|r 392 LALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRM 447 (744)
Q Consensus 392 l~~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~ 447 (744)
|....|+...=+-+-+++.+.-.+.|.|..|||||+++++ |.+|+ .|+.=++
T Consensus 7 lsk~yg~~~~L~dvs~~i~~Ge~~~liG~nGsGKSTll~~-i~Gl~---~~~~G~i 58 (240)
T PRK09493 7 VSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRC-INKLE---EITSGDL 58 (240)
T ss_pred EEEEECCEEEEECEEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCCEE
T ss_conf 8999999988813078987998999999999809999999-96389---9999748
No 116
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346 This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro . Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=96.16 E-value=0.01 Score=37.60 Aligned_cols=31 Identities=19% Similarity=0.100 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHCC-----C-EEEEEEECCCCCCHHH
Q ss_conf 03899999999749-----8-6232200000100789
Q gi|254780606|r 683 NLYAKAVDLVIDNQ-----R-CSTSFIQRRLQIGYNR 713 (744)
Q Consensus 683 ~~~~~~~~~~~~~~-----~-~s~s~~qr~~~~g~~r 713 (744)
..+..|+..+.+.. . -+.|-+..-|..+|++
T Consensus 634 ~~~~~~i~~~~~~~~~~~~~~r~l~~l~~~l~~~~~~ 670 (931)
T TIGR00929 634 NALSSAIDSLYEEDQKEHPAIRSLSDLLNFLPKDSIE 670 (931)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCC
T ss_conf 9999998888731441125522089999972577530
No 117
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=96.15 E-value=0.0093 Score=37.91 Aligned_cols=150 Identities=24% Similarity=0.320 Sum_probs=84.4
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCC----CCCC---EEE-EEE---------EC
Q ss_conf 148469970787534479999999999856801107999723421000125----7752---000-044---------44
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYD----GIPH---LLT-PVV---------TN 473 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~----~~ph---~~~-~v~---------~~ 473 (744)
..--+-|-|-.|||||.+.+.|+=. +....-.|||-.-|.|..+.-.|- -+|+ |+. -|. -|
T Consensus 355 aGe~laIIGPSgSGKStLaR~~vG~--W~~~~G~VRLDGadl~qWD~e~lG~~iGYLPQdvELF~GTva~NIARF~en~d 432 (556)
T TIGR01842 355 AGEALAIIGPSGSGKSTLARILVGI--WPPASGSVRLDGADLKQWDRETLGKHIGYLPQDVELFSGTVAENIARFGENAD 432 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHC--CCCCCCCEEEEHHHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
T ss_conf 7745888747865258898788721--01356533640334402375365880154798505076767640244688788
Q ss_pred HHHHHHHHHHH-HHHHHHH----HHHHHHCCCCCH-HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCH
Q ss_conf 17876899999-9866769----999998077867-99999886420267766654323386799984456876753103
Q gi|254780606|r 474 PKKAVMALKWA-VREMEER----YRKMSHLSVRNI-KSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGK 547 (744)
Q Consensus 474 ~~~~~~~l~~~-~~em~~r----~~~~~~~~~~~i-~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~ 547 (744)
+++..++-+-+ |.||=-| |+--=-.+-.++ .+=.+|+.-.+.-+ ..|.| ||.||=+-=. ..
T Consensus 433 ~~~iieAAklAGvHElIl~lP~GYDT~iG~~G~~LSGGQRQRIaLARAly---------G~P~l-vvLDEPNsNL---D~ 499 (556)
T TIGR01842 433 PEKIIEAAKLAGVHELILRLPDGYDTDIGEGGATLSGGQRQRIALARALY---------GDPKL-VVLDEPNSNL---DE 499 (556)
T ss_pred HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---------CCCEE-EEECCCCCCC---CH
T ss_conf 78999999760303575169688544313777778614689999999871---------79837-8732889876---61
Q ss_pred HHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 5899999999964201358999851654
Q gi|254780606|r 548 EIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 548 ~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
+-|-++.+=-...++.|+=.|+.|+||+
T Consensus 500 ~GE~AL~~Ai~~lK~rg~tvv~itHRp~ 527 (556)
T TIGR01842 500 EGEQALANAIKALKARGITVVVITHRPS 527 (556)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECHHH
T ss_conf 7899999999999867972899841068
No 118
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=96.13 E-value=0.013 Score=37.01 Aligned_cols=162 Identities=17% Similarity=0.296 Sum_probs=81.4
Q ss_pred ECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHH--HEEEEEECCC-----------CCEECCCCCCCCEEEEEEE
Q ss_conf 11201148469970787534479999999999856801--1079997234-----------2100012577520000444
Q gi|254780606|r 406 IADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPD--ECRMIMVDPK-----------MLELSVYDGIPHLLTPVVT 472 (744)
Q Consensus 406 ~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~--~~~~~liD~k-----------~~~~~~~~~~ph~~~~v~~ 472 (744)
-+++.+.-.+-+-|-+|+|||++|+. |.+|+ .|+ .-++++-+-. +.-|-.|.-.||+- |..
T Consensus 25 sl~i~~GE~~~llGpSG~GKTTlLr~-iaGL~---~p~~~~G~I~~~g~~v~~~~~~~R~ig~VFQ~~aLfPhlt--V~e 98 (362)
T TIGR03258 25 SLEIEAGELLALIGKSGCGKTTLLRA-IAGFV---KAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLK--VED 98 (362)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCCCEEEEECCEECCCCCHHHCCEEEECCCCCCCCCCC--HHH
T ss_conf 71999998999999997459999999-97776---7778817999999999989988899489717985368980--999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHH-HHHH
Q ss_conf 417876899999986676999-999807786799---------99988642026776665432338679998445-6876
Q gi|254780606|r 473 NPKKAVMALKWAVREMEERYR-KMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDE-MADL 541 (744)
Q Consensus 473 ~~~~~~~~l~~~~~em~~r~~-~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE-~a~l 541 (744)
|........++-..|+.+|.. ++...+..+... -.+|++-.+. +-.-|.|+ +.|| |+.|
T Consensus 99 Nia~~L~~~~~~~~e~~~rv~e~l~~vgL~~~~~r~P~~LSGGq~QRVAlARA---------L~~~P~il-LlDEP~saL 168 (362)
T TIGR03258 99 NVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARA---------IAIEPDVL-LLDEPLSAL 168 (362)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHH---------HHCCCCEE-EECCCCCCC
T ss_conf 99899986599999999999999877899678626966789989999999999---------75599989-981887655
Q ss_pred HHHCCHHHHHHHHHHHHHHHCC-EEEEEEEECCCCCCCCHHHHHHCCCCEEEE
Q ss_conf 7531035899999999964201-358999851654444146788505630572
Q gi|254780606|r 542 MMVAGKEIEGAIQRLAQMARAA-GIHLIMATQRPSVDVITGTIKANFPIRISF 593 (744)
Q Consensus 542 ~~~~~~~~e~~~~~la~~~ra~-GihlilatQrp~~~vi~~~ik~n~~~ri~~ 593 (744)
-.....+ +...|.++-+.+ ||-.|+.|-... +.+ .+.-||++
T Consensus 169 D~~~r~~---l~~~l~~l~~~l~~~T~i~VTHD~~-EA~------~laDrI~V 211 (362)
T TIGR03258 169 DANIRAN---MREEIAALHEELPELTILCVTHDQD-DAL------TLADKAGI 211 (362)
T ss_pred CHHHHHH---HHHHHHHHHHHCCCCEEEEECCCHH-HHH------HHCCEEEE
T ss_conf 9999999---9999999999767988999899989-999------85899999
No 119
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=96.13 E-value=0.037 Score=33.77 Aligned_cols=164 Identities=16% Similarity=0.202 Sum_probs=94.1
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC--------------CCEECCCCCCCCEEEEE
Q ss_conf 2112011484699707875344799999999998568011079997234--------------21000125775200004
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK--------------MLELSVYDGIPHLLTPV 470 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k--------------~~~~~~~~~~ph~~~~v 470 (744)
|-+.+.|.=-+-+-|..|+|||.+|+ ||+..+ .-+--++++.--|.. |+-|-+|.-++|. + |
T Consensus 21 v~l~i~kG~F~FLtG~SGAGKttLLK-Ll~~~~-~P~~G~v~~~G~~~~~l~~~~~P~LRR~iGvvFQDf~LL~~r-T-v 96 (215)
T TIGR02673 21 VSLHIRKGEFLFLTGPSGAGKTTLLK-LLYGAL-TPSRGQVRVAGEDVSRLRGRQLPLLRRRIGVVFQDFRLLPDR-T-V 96 (215)
T ss_pred CCEEECCCCEEEEECCCCCCHHHHHH-HHHHHC-CCCCCEEEECCEECCCCCCCCCHHHHCCCCEEEECCCCCCCC-C-H
T ss_conf 64475277407887277861789999-998526-987580888874046677564312213154378422110116-6-1
Q ss_pred EECHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHHHH---------HHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHH
Q ss_conf 444178768999999866769-9999980778679999---------988642026776665432338679998445687
Q gi|254780606|r 471 VTNPKKAVMALKWAVREMEER-YRKMSHLSVRNIKSYN---------ERISTMYGEKPQGCGDDMRPMPYIVIIVDEMAD 540 (744)
Q Consensus 471 ~~~~~~~~~~l~~~~~em~~r-~~~~~~~~~~~i~~~n---------~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~ 540 (744)
+.|.--+..+..|...+..+| ++.+...|-.+=..-. +|++-+++--. -|-|+ +.||=-
T Consensus 97 ~eNVAl~L~V~G~~~~~I~~rV~~~L~~vGL~~K~~~~P~~LSGGEQQRvaIARAiv~---------~P~lL-LADEPT- 165 (215)
T TIGR02673 97 YENVALPLEVRGKKKREIQRRVEAALRLVGLEHKADAFPEQLSGGEQQRVAIARAIVN---------SPELL-LADEPT- 165 (215)
T ss_pred HHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHHHHC---------CCCEE-EEECCC-
T ss_conf 3411210111388803367899999985286325425721004725788888765304---------89679-877889-
Q ss_pred HHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCC-CCEEE
Q ss_conf 67531035899999999964201358999851654444146788505-63057
Q gi|254780606|r 541 LMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANF-PIRIS 592 (744)
Q Consensus 541 l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~-~~ri~ 592 (744)
-...+..-.-|.+|-+.--..|.=+|+||--.+ +-.|. ..|++
T Consensus 166 --GNLD~~~~~~iL~ll~~~n~~GtTV~vATHD~~-------L~~~~P~~R~~ 209 (215)
T TIGR02673 166 --GNLDPALSERILDLLKELNKRGTTVIVATHDLE-------LVERVPAHRVL 209 (215)
T ss_pred --CCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-------HHHCCCCCCEE
T ss_conf --996876789999999998418987999807879-------98437899778
No 120
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.12 E-value=0.0098 Score=37.76 Aligned_cols=176 Identities=18% Similarity=0.257 Sum_probs=85.5
Q ss_pred CCEEECCHHH--CCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCC-----------CCCEEE
Q ss_conf 8732112011--484699707875344799999999998568011079997234210001257-----------752000
Q gi|254780606|r 402 GESVIADLAN--MPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDG-----------IPHLLT 468 (744)
Q Consensus 402 g~~~~~dl~~--~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~-----------~ph~~~ 468 (744)
-.|+.+||+- .--+-|.|..|||||++|| +|.+.. .|..=.+++-+--......|+. ..||-
T Consensus 13 ~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLn-LIAGF~---~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLt- 87 (231)
T COG3840 13 HLPMRFDLTVPAGEIVAILGPSGAGKSTLLN-LIAGFE---TPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLT- 87 (231)
T ss_pred CCEEEEEEEECCCCEEEEECCCCCCHHHHHH-HHHHCC---CCCCCEEEECCEECCCCCCCCCCHHHHHHCCCCCHHHH-
T ss_conf 5007888760678579997788865788999-987424---77874589857214768954487311110056421102-
Q ss_pred EEEECHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCC----CCCCCCCEEEEEHHH-HHHHH
Q ss_conf 0444417876-89999998667699999980778679999988642026776665----432338679998445-68767
Q gi|254780606|r 469 PVVTNPKKAV-MALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCG----DDMRPMPYIVIIVDE-MADLM 542 (744)
Q Consensus 469 ~v~~~~~~~~-~~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~----~~~~~~p~ivvviDE-~a~l~ 542 (744)
|.+|..-.. -.|+.-..+-++.....+.. .|.+|-+|....-+...+... .-.+.-| |...|| |+.|
T Consensus 88 -V~qNigLGl~P~LkL~a~~r~~v~~aa~~v---Gl~~~~~RLP~~LSGGqRQRvALARclvR~~P--ilLLDEPFsAL- 160 (231)
T COG3840 88 -VAQNIGLGLSPGLKLNAEQREKVEAAAAQV---GLAGFLKRLPGELSGGQRQRVALARCLVREQP--ILLLDEPFSAL- 160 (231)
T ss_pred -HHHHHCCCCCCCCCCCHHHHHHHHHHHHHH---CHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC--EEEECCCHHHC-
T ss_conf -655324567866524888999999999985---75557540962247407789999998802687--57754811331-
Q ss_pred HHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCH
Q ss_conf 53103589999999996420135899985165444414678850563057203681
Q gi|254780606|r 543 MVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSK 598 (744)
Q Consensus 543 ~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~ 598 (744)
.+.--.+++.-+.+..+--|.-|++-|-.|+ |.. .+..|+.|-..-+
T Consensus 161 --dP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~------~ia~~~~~l~~Gr 207 (231)
T COG3840 161 --DPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAA------RIADRVVFLDNGR 207 (231)
T ss_pred --CHHHHHHHHHHHHHHHHHHCCEEEEEECCHH-HHH------HHHHCEEEEECCE
T ss_conf --9788999999999998842877999957888-999------7652069985777
No 121
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.10 E-value=0.084 Score=31.35 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=27.9
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 1484699707875344799999999998568011079997234
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK 453 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k 453 (744)
..==.+|+|-.|+|||.+...+..+.+.+ .-+.+.||..
T Consensus 22 ~G~itei~G~pG~GKTtl~lq~a~~~~~~----g~~vlYidtE 60 (224)
T PRK09361 22 RGTITQIYGPPGSGKTNICIQLAVEAARQ----GKKVIYIDTE 60 (224)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC----CCCEEEECCC
T ss_conf 88799998999985999999999999974----9909996787
No 122
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.08 E-value=0.046 Score=33.17 Aligned_cols=154 Identities=18% Similarity=0.339 Sum_probs=69.8
Q ss_pred CCCEEE----CCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCC-EEC---------CCCCCCCE
Q ss_conf 887321----1201148469970787534479999999999856801107999723421-000---------12577520
Q gi|254780606|r 401 SGESVI----ADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKML-ELS---------VYDGIPHL 466 (744)
Q Consensus 401 ~g~~~~----~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~-~~~---------~~~~~ph~ 466 (744)
+++.++ +++.+.-.+.|.|.+|||||++++. |++|+ .|+.=++ ++|-+.+ .+. .....|.+
T Consensus 18 ~~~~iL~~is~~i~~Ge~~~i~G~sGsGKSTLlk~-i~gl~---~p~~G~I-~~~g~~i~~~~~~~~r~~i~~v~Q~~~l 92 (225)
T PRK10247 18 GDTKILNNINFSLRAGEFKLITGPSGCGKSTLLKI-VASLI---SPTSGTL-LFEGEDISTLKPEIYRQQVSYCAQTPTL 92 (225)
T ss_pred CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHH-HHCCC---CCCCCEE-EECCEECCCCCHHHHHHHCCEEECCCCC
T ss_conf 99899945179985996999999999999999999-96466---8887659-9999997749999998527457045543
Q ss_pred EEEEEECHHHHHHHHHHHHH----HHHHHHHHHHHCCCC---------CHH-HHHHHHHHHHCCCCCCCCCCCCCCCEEE
Q ss_conf 00044441787689999998----667699999980778---------679-9999886420267766654323386799
Q gi|254780606|r 467 LTPVVTNPKKAVMALKWAVR----EMEERYRKMSHLSVR---------NIK-SYNERISTMYGEKPQGCGDDMRPMPYIV 532 (744)
Q Consensus 467 ~~~v~~~~~~~~~~l~~~~~----em~~r~~~~~~~~~~---------~i~-~~n~~~~~~~~~~~~~~~~~~~~~p~iv 532 (744)
+...+ .+.. .+.|... +..+..+.+...+.. ++. +-.+|+.-.+.-. .-|. +
T Consensus 93 ~~~tv---~eni-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSGGqkQRv~iARaL~---------~~p~-i 158 (225)
T PRK10247 93 FGDTV---YDNL-IFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQ---------FMPK-V 158 (225)
T ss_pred CHHHH---HHHH-HHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHH---------CCCC-E
T ss_conf 41539---9999-8578766766789999999987599566761881118999999999999986---------0999-9
Q ss_pred EEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 9844568767531035899999999964201358999851654
Q gi|254780606|r 533 IIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 533 vviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
++.||-.--+.. ...+..+.-|-+..+..|+-+|+.|.+.+
T Consensus 159 LllDEPts~LD~--~~~~~i~~~i~~l~~~~~~tvi~vtHd~~ 199 (225)
T PRK10247 159 LLLDEITSALDE--SNKHNVNEIIHRYVREQNIAVLWVTHDKD 199 (225)
T ss_pred EEEECCCCCCCH--HHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 999597666899--99999999999999838989999903999
No 123
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.07 E-value=0.058 Score=32.45 Aligned_cols=190 Identities=15% Similarity=0.229 Sum_probs=87.6
Q ss_pred EEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEEC--------CCCCCC--CEEEE-EEE
Q ss_conf 3211201148469970787534479999999999856801107999723421000--------125775--20000-444
Q gi|254780606|r 404 SVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELS--------VYDGIP--HLLTP-VVT 472 (744)
Q Consensus 404 ~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~--------~~~~~p--h~~~~-v~~ 472 (744)
-+-+++.+.-++.|-|..|||||++++. |.+|+. -.-.++.+.-.|.+..... .|++ | +++.. |..
T Consensus 28 ~isl~i~~Ge~vaivG~nGsGKSTLlk~-l~Gll~-p~~G~I~v~G~~i~~~~~~~~~~~ig~VfQ~-Pd~q~~~~tV~e 104 (273)
T PRK13632 28 NVSFTINEGEYVAILGHNGSGKSTISKI-LTGLLK-PQSGEIKIFGITISKENLKYLRKKIGIIFQN-PDNQFIGITVED 104 (273)
T ss_pred EEEEEECCCCEEEEECCCCCHHHHHHHH-HHCCCC-CCCCEEEECCEECCCCCHHHHHHHEEEEEEC-CCHHCCCCCHHH
T ss_conf 4288984998999999999869999999-973877-8887599999999968989987435699877-102027751788
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCHHHH---------HHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHH
Q ss_conf 4178768999999866769999-998077867999---------998864202677666543233867999844568767
Q gi|254780606|r 473 NPKKAVMALKWAVREMEERYRK-MSHLSVRNIKSY---------NERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLM 542 (744)
Q Consensus 473 ~~~~~~~~l~~~~~em~~r~~~-~~~~~~~~i~~~---------n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~ 542 (744)
+..........-.+++.+|... +...|..++.+. .+|++-... +..-|.| ++.||=-.-+
T Consensus 105 ~iafgl~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~p~~LSGGqkQRvaiA~a---------La~~P~i-liLDEPTs~L 174 (273)
T PRK13632 105 DIAFGLENKKIPPKKMKDIIDDLAKKVGMEDYLKKEPQNLSGGQKQRVAIASV---------LALNPEI-IIFDESTSML 174 (273)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHCCHHHHHHHHHHHH---------HHCCCCE-EEEECCCCCC
T ss_conf 88867866799999999999999998698887747820099999999999999---------9719999-9980775569
Q ss_pred H-HCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCCCCEEE
Q ss_conf 5-310358999999999642013589998516544441467885056305720368111003267631688568984686
Q gi|254780606|r 543 M-VAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDMLY 621 (744)
Q Consensus 543 ~-~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~gd~l~ 621 (744)
. ....++... |-++-+..|+-+|+.|.+.+ . +. + --||.+-- +-+ |+..+-.+.|+.+-+.|.
T Consensus 175 D~~~~~~l~~~---l~~l~~~~g~TvI~iTHd~~--~----~~-~-aDrv~vm~----~G~-iv~~G~p~el~~~~e~l~ 238 (273)
T PRK13632 175 DPKGKREIKKI---MVDLRKDRKKTLISITHDMD--E----AI-L-ADKVIVFS----NGK-LIAQGKPKEILNDKEILE 238 (273)
T ss_pred CHHHHHHHHHH---HHHHHHHCCCEEEEEEECHH--H----HH-C-CCEEEEEE----CCE-EEEECCHHHHHCCHHHHH
T ss_conf 98999999999---99999846989999942888--9----97-1-99999998----999-999769999877999999
Q ss_pred E
Q ss_conf 4
Q gi|254780606|r 622 M 622 (744)
Q Consensus 622 ~ 622 (744)
.
T Consensus 239 ~ 239 (273)
T PRK13632 239 K 239 (273)
T ss_pred H
T ss_conf 7
No 124
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.07 E-value=0.063 Score=32.23 Aligned_cols=162 Identities=20% Similarity=0.317 Sum_probs=78.8
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCC------------CEECCCCCCCCEEEEEEE
Q ss_conf 21120114846997078753447999999999985680110799972342------------100012577520000444
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKM------------LELSVYDGIPHLLTPVVT 472 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~------------~~~~~~~~~ph~~~~v~~ 472 (744)
+-+++.+.-.+-+-|-.|+|||++|+. |.+|. .|+.=++++ |-+. .-|-.|.-.||+- |..
T Consensus 36 vsl~I~~GE~~~llGpSGsGKSTLlr~-iaGl~---~p~sG~I~~-~G~~v~~~~~~~R~ig~VfQ~~aLfp~lT--V~e 108 (378)
T PRK09452 36 LDLTINNGEFLTLLGPSGCGKTTVLRL-IAGFE---TPDSGRIML-DGQDITHVPAENRYVNTVFQSYALFPHMT--VFE 108 (378)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCEEEEE-CCEECCCCCHHHCCEEEEECCCCCCCCCC--HHH
T ss_conf 277999998999998999769999999-97699---998469999-99998989978988589922764378986--999
Q ss_pred CHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCHH---------HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHH-HHH
Q ss_conf 4178768999999866769-9999980778679---------9999886420267766654323386799984456-876
Q gi|254780606|r 473 NPKKAVMALKWAVREMEER-YRKMSHLSVRNIK---------SYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEM-ADL 541 (744)
Q Consensus 473 ~~~~~~~~l~~~~~em~~r-~~~~~~~~~~~i~---------~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~-a~l 541 (744)
+..........-..|+.+| .+++...+..++. +-.+|+.-.+.- -.-|. |++.||= +.|
T Consensus 109 Nv~~~l~~~~~~~~e~~~rv~e~L~~v~L~~~~~r~p~~LSGGqqQRVaiARAL---------~~~P~-vLLLDEPts~L 178 (378)
T PRK09452 109 NVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAV---------VNKPK-VLLLDESLSAL 178 (378)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHH---------CCCCC-EEEECCCCCCC
T ss_conf 999899765998799999999998750734354368354998899999999986---------23998-99957864447
Q ss_pred HHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEE
Q ss_conf 7531035899999999964201358999851654444146788505630572
Q gi|254780606|r 542 MMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISF 593 (744)
Q Consensus 542 ~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~ 593 (744)
..+.-+.....|.++-|..||-.|+.|-..+ .++ .+.-||+.
T Consensus 179 ---D~~~r~~~~~~l~~l~~~~g~T~i~VTHD~~-eA~------~laDrI~V 220 (378)
T PRK09452 179 ---DYKLRKQMQNELKALQRKLGITFVFVTHDQE-EAL------TMSDRIVV 220 (378)
T ss_pred ---CHHHHHHHHHHHHHHHHHHCCEEEEECCCHH-HHH------HHCCEEEE
T ss_conf ---9999999999999999984998999988999-999------86998999
No 125
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.06 E-value=0.13 Score=30.16 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=26.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCC--HHHEEEEEECCC
Q ss_conf 4699707875344799999999998568--011079997234
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLR--PDECRMIMVDPK 453 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~--p~~~~~~liD~k 453 (744)
=..|+|..|+|||.+-..++.+...... ..+-+.+.||-.
T Consensus 21 ItEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDtE 62 (226)
T cd01393 21 ITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC
T ss_conf 999999999989999999999985422116999619999557
No 126
>PRK08840 replicative DNA helicase; Provisional
Probab=96.06 E-value=0.039 Score=33.61 Aligned_cols=147 Identities=16% Similarity=0.170 Sum_probs=71.7
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECC-------CCCCC--CEEEEEEECHHH--H
Q ss_conf 011484699707875344799999999998568011079997234210001-------25775--200004444178--7
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSV-------YDGIP--HLLTPVVTNPKK--A 477 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~-------~~~~p--h~~~~v~~~~~~--~ 477 (744)
|...--++|||.+|+|||.|...|+...+.+.. ...+++-.-|..-.. -.+++ ++...-+++.++ .
T Consensus 214 l~~G~LiviaaRPsmGKTalalnia~n~a~~~~---~~v~~fSlEMs~~ql~~Rlls~~s~i~~~~ir~g~l~~~e~~~i 290 (464)
T PRK08840 214 LQGSDLIIVAARPSMGKTTFAMNLCENAAMDQD---KPVLIFSLEMPAEQLMMRMLASLSRVDQTKIRTGQLDDEDWARI 290 (464)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC---CCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHH
T ss_conf 875767999837987368999999999999659---96799767799899999999985389820111488899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC------HHHHH
Q ss_conf 689999998667699999980778679999988642026776665432338679998445687675310------35899
Q gi|254780606|r 478 VMALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG------KEIEG 551 (744)
Q Consensus 478 ~~~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~------~~~e~ 551 (744)
..++.++ |+..--.+.....-++.....+.+...... ..+ =+||||=+. ||...+ .++..
T Consensus 291 ~~a~~~~---~~~~~l~idd~~~~t~~~i~a~~r~~~~~~--------~~l--~lvvIDYLq-L~~~~~~~~~r~~~i~~ 356 (464)
T PRK08840 291 SSTMGIL---MEKKNMYIDDSSGLTPTEVRSRARRVAREH--------GGL--SMIMVDYLQ-LMRVPALQDNRTLEIAE 356 (464)
T ss_pred HHHHHHH---HHCCCEEEECCCCCCHHHHHHHHHHHHHHC--------CCC--CEEEEEHHH-HCCCCCCCCHHHHHHHH
T ss_conf 9999999---847995885699875799999999999864--------898--789961886-60678864036789999
Q ss_pred HHHHHHHHHHCCEEEEEEEEC
Q ss_conf 999999964201358999851
Q gi|254780606|r 552 AIQRLAQMARAAGIHLIMATQ 572 (744)
Q Consensus 552 ~~~~la~~~ra~GihlilatQ 572 (744)
.-..|-++|+.++|.+|+.+|
T Consensus 357 isr~lK~lAkel~vpVv~lsQ 377 (464)
T PRK08840 357 ISRSLKALAKELNVPVVALSQ 377 (464)
T ss_pred HHHHHHHHHHHHCCCEEEECC
T ss_conf 999999999996998999631
No 127
>PRK13767 ATP-dependent helicase; Provisional
Probab=96.05 E-value=0.048 Score=32.99 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=4.8
Q ss_pred CEEEEEEECCCC
Q ss_conf 862322000001
Q gi|254780606|r 697 RCSTSFIQRRLQ 708 (744)
Q Consensus 697 ~~s~s~~qr~~~ 708 (744)
-..+.+++||||
T Consensus 739 L~~S~l~krrFR 750 (878)
T PRK13767 739 LDRTELLKRRFR 750 (878)
T ss_pred HCCCHHHHHHHH
T ss_conf 745899999999
No 128
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.05 E-value=0.091 Score=31.11 Aligned_cols=47 Identities=19% Similarity=0.353 Sum_probs=31.6
Q ss_pred ECCCCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEE
Q ss_conf 057887321120----114846997078753447999999999985680110799
Q gi|254780606|r 398 KTISGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMI 448 (744)
Q Consensus 398 ~~~~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~ 448 (744)
+..++++++-|+ .+.-.+.|.|..|||||++|+. |++++ .|+.=++.
T Consensus 9 ~~~g~~~vl~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~-l~Gl~---~p~~G~i~ 59 (204)
T PRK13538 9 CERDERILFEGLSFTLNAGELVQIEGPNGAGKTSLLRI-LAGLA---RPDAGEVL 59 (204)
T ss_pred EEECCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHH-HHCCC---CCCCCEEE
T ss_conf 99899999805177987998999999999859999999-97688---88873799
No 129
>pfam07693 KAP_NTPase KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.
Probab=96.04 E-value=0.043 Score=33.35 Aligned_cols=88 Identities=17% Similarity=0.230 Sum_probs=54.7
Q ss_pred EEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCC
Q ss_conf 79998445687675310358999999999642013589998516544441467885056305720368111003267631
Q gi|254780606|r 530 YIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHG 609 (744)
Q Consensus 530 ~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~g 609 (744)
.|||+||++--+ .+.++-..+..|--.+.--+++.|||..+ ++|...|+.++..- +..|
T Consensus 161 ~iVviIDDLDRc---~p~~~v~~Le~Ik~~~d~~n~vfVLa~D~---~~v~~al~~~~~~~---------------~~~~ 219 (301)
T pfam07693 161 RIVVIIDDLDRC---EPEEAVELLEAVRLLFDFPNVVFILAYDE---EIIKKAIEHNYGGG---------------EIDG 219 (301)
T ss_pred CEEEEECCCCCC---CHHHHHHHHHHHHHHHCCCCEEEEEECCH---HHHHHHHHHHCCCC---------------CCCH
T ss_conf 789997365548---87899999999999726798189997589---99999999873878---------------7418
Q ss_pred HHHHCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 688568984686468984389993438988999999999
Q gi|254780606|r 610 AEQLLGRGDMLYMSGGGRIQRVHGPLVSDIEIEKVVQHL 648 (744)
Q Consensus 610 ae~l~g~gd~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 648 (744)
-++|--- + -+++.=|-.+..+++....-.
T Consensus 220 ~~YLeKi----I------q~p~~lP~~~~~~~~~~l~~~ 248 (301)
T pfam07693 220 QDYLEKI----I------QLPFKLPPLGLRELRRFLMTL 248 (301)
T ss_pred HHHHHHH----E------ECEEECCCCCHHHHHHHHHHH
T ss_conf 9999854----1------024767998789999999999
No 130
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04 E-value=0.0049 Score=39.80 Aligned_cols=163 Identities=18% Similarity=0.357 Sum_probs=82.5
Q ss_pred EEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCC--------------CEECCCCCCCCEEEE
Q ss_conf 321120114846997078753447999999999985680110799972342--------------100012577520000
Q gi|254780606|r 404 SVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKM--------------LELSVYDGIPHLLTP 469 (744)
Q Consensus 404 ~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~--------------~~~~~~~~~ph~~~~ 469 (744)
-+-+++.+.--+-|-|-.|||||++|+ +|.+|+ .|+.=+++ +|-+. .-|-.|.-.||+-
T Consensus 19 ~vsl~i~~Ge~~~ilGpSG~GKSTllr-~i~gl~---~p~~G~I~-i~g~~i~~~~~~~lrr~ig~vfQ~~~Lfp~lt-- 91 (242)
T cd03295 19 NLNLEIAKGEFLVLIGPSGSGKTTTMK-MINRLI---EPTSGEIF-IDGEDIREQDPVELRRKIGYVIQQIGLFPHMT-- 91 (242)
T ss_pred EEEEEECCCCEEEEECCCCCHHHHHHH-HHHCCC---CCCCEEEE-ECCEECCCCCHHHHHCCCEEEECCCCCCCCCC--
T ss_conf 027688699899999999956999999-997599---99815999-99999999997897388679917997588882--
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCHHHHH------------HHHHHHHCCCCCCCCCCCCCCCEEEEEHH
Q ss_conf 444417876899999986676999-99980778679999------------98864202677666543233867999844
Q gi|254780606|r 470 VVTNPKKAVMALKWAVREMEERYR-KMSHLSVRNIKSYN------------ERISTMYGEKPQGCGDDMRPMPYIVIIVD 536 (744)
Q Consensus 470 v~~~~~~~~~~l~~~~~em~~r~~-~~~~~~~~~i~~~n------------~~~~~~~~~~~~~~~~~~~~~p~ivvviD 536 (744)
|..+.........|-..+.++|.. ++...+.. ...|- +|++-.+.- ..-|.|+ +.|
T Consensus 92 V~eNi~~~~~~~~~~~~~~~~rv~ell~~v~L~-~~~~~~~~p~~LSGGqkQRvaiARAl---------~~~P~il-LlD 160 (242)
T cd03295 92 VEENIALVPKLLKWPKEKIRERADELLALVGLD-PAEFADRYPHELSGGQQQRVGVARAL---------AADPPLL-LMD 160 (242)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC-CHHHCCCCHHHCCHHHHHHHHHHHHH---------HCCCCEE-EEC
T ss_conf 999999999975999999999999999874999-30110079566899999999999999---------6299999-981
Q ss_pred H-HHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEE
Q ss_conf 5-687675310358999999999642013589998516544441467885056305720
Q gi|254780606|r 537 E-MADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQ 594 (744)
Q Consensus 537 E-~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~ 594 (744)
| ++.|-.....++ ...|.++-+..|+-+|+.|...+ .++ .+.-||++-
T Consensus 161 EP~saLD~~~~~~i---~~~l~~l~~~~~~T~i~vTHd~~-ea~------~~aDri~vm 209 (242)
T cd03295 161 EPFGALDPITRDQL---QEEFKRLQQELGKTIVFVTHDID-EAF------RLADRIAIM 209 (242)
T ss_pred CCCCCCCHHHHHHH---HHHHHHHHHHHCCEEEEECCCHH-HHH------HHCCEEEEE
T ss_conf 87654698999999---99999999975999999998999-999------969989999
No 131
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=96.03 E-value=0.0026 Score=41.72 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=41.7
Q ss_pred EEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC--CCCC----HHHHHHCCCCEEEEECCCHHHCC
Q ss_conf 999844568767531035899999999964201358999851654--4441----46788505630572036811100
Q gi|254780606|r 531 IVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS--VDVI----TGTIKANFPIRISFQVTSKIDSR 602 (744)
Q Consensus 531 ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~--~~vi----~~~ik~n~~~ri~~~v~~~~dsr 602 (744)
+.++.|||+-|-. ++ .+.+....-|+.||++.+-.|-.+ .+.- -..|.+|..+||.|...+..+.+
T Consensus 407 VLfLLDEFanLGk-----Ip-~fekaiA~mrGYGIrl~lIiQslsQLk~~YG~~~a~tIl~Nc~~~I~f~~nD~eTAk 478 (628)
T PRK13897 407 VLFLMDEFPTLGK-----ME-QFKTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETAN 478 (628)
T ss_pred EEEEECCCCCCCC-----HH-HHHHHHHHHHCCCCEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEECCCCHHHHH
T ss_conf 8998510021487-----48-899999987036878999997699999885734477898558637986689753499
No 132
>pfam05970 DUF889 PIF1 helicase. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated.
Probab=96.02 E-value=0.0091 Score=37.98 Aligned_cols=41 Identities=22% Similarity=0.199 Sum_probs=25.2
Q ss_pred EEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHC-------CEEEEEEEE---CCCC
Q ss_conf 99984456876753103589999999996420-------135899985---1654
Q gi|254780606|r 531 IVIIVDEMADLMMVAGKEIEGAIQRLAQMARA-------AGIHLIMAT---QRPS 575 (744)
Q Consensus 531 ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra-------~Gihlilat---Qrp~ 575 (744)
-++||||.. |...+ .-+.|.+++|.-|. -||.+||+- |=|-
T Consensus 76 ~vLIIDEiS---Mv~~~-lfd~id~~lr~i~~~~~~~PFGGiqvIl~GDf~QLPP 126 (418)
T pfam05970 76 SLIIWDEAP---MTHRH-CFEALDRTLRDILKNTDDKPFGGKTVVLGGDFRQILP 126 (418)
T ss_pred CEEEEECCC---CCCHH-HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHCCC
T ss_conf 799985411---35789-9999999999987127876779747998244765587
No 133
>PRK10908 cell division protein FtsE; Provisional
Probab=95.99 E-value=0.035 Score=33.92 Aligned_cols=155 Identities=18% Similarity=0.306 Sum_probs=69.1
Q ss_pred CCEEEC----CHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE--ECCCC---CEE--------CCCCCCC
Q ss_conf 873211----201148469970787534479999999999856801107999--72342---100--------0125775
Q gi|254780606|r 402 GESVIA----DLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM--VDPKM---LEL--------SVYDGIP 464 (744)
Q Consensus 402 g~~~~~----dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l--iD~k~---~~~--------~~~~~~p 464 (744)
|++++- ++.+.-.+.+.|..|||||++++. |.+|+ .|+.=++++ .|... .+. ..|++ +
T Consensus 14 ~~~~L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~-i~Gl~---~p~~G~i~~~g~~i~~~~~~~~~~~r~~ig~v~Q~-~ 88 (222)
T PRK10908 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKL-ICGIE---RPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQD-H 88 (222)
T ss_pred CCEEEECCEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCEEEEECCEECCCCCHHHHHHHHHCCEEECCC-C
T ss_conf 9879864387996998999999998079999999-96599---99862999999998756666779987302477468-3
Q ss_pred CEEE--EEEECHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCHH--------H-HHHHHHHHHCCCCCCCCCCCCCCCEEE
Q ss_conf 2000--044441787689999998667699-999980778679--------9-999886420267766654323386799
Q gi|254780606|r 465 HLLT--PVVTNPKKAVMALKWAVREMEERY-RKMSHLSVRNIK--------S-YNERISTMYGEKPQGCGDDMRPMPYIV 532 (744)
Q Consensus 465 h~~~--~v~~~~~~~~~~l~~~~~em~~r~-~~~~~~~~~~i~--------~-~n~~~~~~~~~~~~~~~~~~~~~p~iv 532 (744)
+++. .|..+.........+-..++.+|. ..+...+..+.. + -.+|+.-.+.-. .-|.|
T Consensus 89 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~p~~LSGGq~QRvaiAraL~---------~~P~i- 158 (222)
T PRK10908 89 HLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVV---------NKPAV- 158 (222)
T ss_pred CCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHH---------CCCCE-
T ss_conf 01689770045657898849998999999999998748765764887668968999999999997---------69999-
Q ss_pred EEHHHHH-HHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 9844568-767531035899999999964201358999851654
Q gi|254780606|r 533 IIVDEMA-DLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 533 vviDE~a-~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
++.||=. .|-....+++...|.++. + .|+-+|+.|...+
T Consensus 159 LllDEPt~~LD~~~~~~v~~~l~~l~---~-~g~tvl~vtHd~~ 198 (222)
T PRK10908 159 LLADEPTGNLDDALSEGILRLFEEFN---R-VGVTVLMATHDIG 198 (222)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHH---H-CCCEEEEECCCHH
T ss_conf 99909876679999999999999998---6-1999999947999
No 134
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.99 E-value=0.015 Score=36.46 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=29.8
Q ss_pred CEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 732112011484699707875344799999999998568
Q gi|254780606|r 403 ESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLR 441 (744)
Q Consensus 403 ~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~ 441 (744)
+.-+..+...|=.||.|.||||||..|.+|..+|.-...
T Consensus 16 ~~~~~~~f~~gi~lI~G~nGsGKSSIldAI~~ALyG~~~ 54 (908)
T COG0419 16 DIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTP 54 (908)
T ss_pred CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 562231578883799899999788999999999828987
No 135
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.97 E-value=0.047 Score=33.05 Aligned_cols=158 Identities=17% Similarity=0.264 Sum_probs=72.9
Q ss_pred CCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCC-------CCCCCEEEE
Q ss_conf 887321120----114846997078753447999999999985680110799972342100012-------577520000
Q gi|254780606|r 401 SGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVY-------DGIPHLLTP 469 (744)
Q Consensus 401 ~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~-------~~~ph~~~~ 469 (744)
..+++.-|+ .+.=++.|.|.||||||++++ +|+.+ |.....++.+--+|-+......+ ..-|+++..
T Consensus 326 ~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTLl~-LL~g~-y~p~~G~I~idg~di~~i~~~~lR~~I~~V~Q~~~LF~~ 403 (569)
T PRK10789 326 TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLS-LIQRH-FDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD 403 (569)
T ss_pred CCCCHHCCCCCEECCCCEEEEECCCCCCHHHHHH-HHHHH-HHCCCCCEEEECEECCCCCHHHHHHCCCCCCCCCCCCCC
T ss_conf 9842230765688899789987999998799999-99977-642678746501013425768886314765887502566
Q ss_pred EEE-C---------HHHHHHHHHH-----HHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
Q ss_conf 444-4---------1787689999-----998667699999-98077867999998864202677666543233867999
Q gi|254780606|r 470 VVT-N---------PKKAVMALKW-----AVREMEERYRKM-SHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVI 533 (744)
Q Consensus 470 v~~-~---------~~~~~~~l~~-----~~~em~~r~~~~-~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivv 533 (744)
-+. | .++...+++. .+..|...|+.+ .+.|.+-=.+=.+|++-.+.-.. -|. ++
T Consensus 404 TI~eNI~lg~~~~~~eei~~a~~~a~l~~~i~~lp~G~dT~ige~G~~LSGGQrQRialARAll~---------~p~-il 473 (569)
T PRK10789 404 TVANNIALGRPDATQQEIEHVARLASVHEDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL---------NAE-IL 473 (569)
T ss_pred CHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC---------CCC-EE
T ss_conf 29999865797765458999999855568764375532371268889969999999999999954---------999-89
Q ss_pred EHHHHHHHHH-HCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 8445687675-31035899999999964201358999851654
Q gi|254780606|r 534 IVDEMADLMM-VAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 534 viDE~a~l~~-~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
+.||----+. ...+.+...+.++ ..|--+|+-|.|++
T Consensus 474 iLDEaTSaLD~~tE~~i~~~l~~~-----~~~~T~i~IaHRls 511 (569)
T PRK10789 474 ILDDALSAVDGRTEHQILHNLRQW-----GEGRTVIISAHRLS 511 (569)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHH-----CCCCEEEEECCCHH
T ss_conf 980876668999999999999997-----49998999715888
No 136
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.95 E-value=0.07 Score=31.91 Aligned_cols=161 Identities=20% Similarity=0.284 Sum_probs=83.3
Q ss_pred CCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC----CC----------CCEECCCCCCCCEEEEEEE
Q ss_conf 120114846997078753447999999999985680110799972----34----------2100012577520000444
Q gi|254780606|r 407 ADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD----PK----------MLELSVYDGIPHLLTPVVT 472 (744)
Q Consensus 407 ~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD----~k----------~~~~~~~~~~ph~~~~v~~ 472 (744)
+++.+.--+.|.|-.|||||++|++|- .--.|+.=.+++-+ .+ |.-|-.|+-.||+- +..
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRclN----~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPH~T--vle 96 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCLN----GLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLT--VLE 96 (240)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHH----CCCCCCCCEEEECCEECCCHHHHHHHHHHCCEECCCCCCCCCCH--HHH
T ss_conf 167389789998999998889999997----78688786499998722545469999985576624665465532--988
Q ss_pred CHHHHHH-HHHHHHHHHH-HHHHHHHHCCCCCH-HHHH--------HHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHH-
Q ss_conf 4178768-9999998667-69999998077867-9999--------988642026776665432338679998445687-
Q gi|254780606|r 473 NPKKAVM-ALKWAVREME-ERYRKMSHLSVRNI-KSYN--------ERISTMYGEKPQGCGDDMRPMPYIVIIVDEMAD- 540 (744)
Q Consensus 473 ~~~~~~~-~l~~~~~em~-~r~~~~~~~~~~~i-~~~n--------~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~- 540 (744)
|.-.+.. ++++-..|-+ +-.+++.+.|..+- +.|- +|++..+.-. --| -++.+||---
T Consensus 97 Nv~lap~~v~~~~k~eA~~~A~~lL~~VGL~dka~~yP~qLSGGQqQRVAIARALa---------M~P-~vmLFDEPTSA 166 (240)
T COG1126 97 NVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA---------MDP-KVMLFDEPTSA 166 (240)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHC---------CCC-CEEEECCCCCC
T ss_conf 87775399729899999999999999869556665395104807889999999871---------799-88863697543
Q ss_pred HHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEE
Q ss_conf 675310358999999999642013589998516544441467885056305720
Q gi|254780606|r 541 LMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQ 594 (744)
Q Consensus 541 l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~ 594 (744)
|--..-.|+...+..||+. |+-+|+-|---. .--++..||.|-
T Consensus 167 LDPElv~EVL~vm~~LA~e----GmTMivVTHEM~-------FAr~VadrviFm 209 (240)
T COG1126 167 LDPELVGEVLDVMKDLAEE----GMTMIIVTHEMG-------FAREVADRVIFM 209 (240)
T ss_pred CCHHHHHHHHHHHHHHHHC----CCEEEEEECHHH-------HHHHHHHEEEEE
T ss_conf 7988999999999999976----986999950367-------999862228995
No 137
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.95 E-value=0.0046 Score=40.03 Aligned_cols=62 Identities=11% Similarity=0.186 Sum_probs=39.3
Q ss_pred EEEEHHHHHHHHHHCCHHHHHHHHHHH--------HHHHCCEE---EEEEEECCCCCCCCHHHHHHCCCCEEEEECC
Q ss_conf 999844568767531035899999999--------96420135---8999851654444146788505630572036
Q gi|254780606|r 531 IVIIVDEMADLMMVAGKEIEGAIQRLA--------QMARAAGI---HLIMATQRPSVDVITGTIKANFPIRISFQVT 596 (744)
Q Consensus 531 ivvviDE~a~l~~~~~~~~e~~~~~la--------~~~ra~Gi---hlilatQrp~~~vi~~~ik~n~~~ri~~~v~ 596 (744)
=|+.+||+..|- +.+-+.|..-+ +-|.+.-. ++++||+.|..+-+.+++-+-|...+...-.
T Consensus 130 GVLylDEinll~----~~vld~Ll~~~e~G~~~IeReg~s~~~ParF~LVatmNPeEg~Lrp~lLDRf~l~v~v~~~ 202 (334)
T PRK13407 130 GYLYIDEVNLLE----DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSP 202 (334)
T ss_pred CEEEEECHHHCC----HHHHHHHHHHHHCCCEEEEECCEEEECCCCCEEEEEECCCCCCCCHHHHHHHCEEEEECCC
T ss_conf 867872053333----8899999988716957999776346036626589820888777598998361006871487
No 138
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.94 E-value=0.043 Score=33.33 Aligned_cols=195 Identities=12% Similarity=0.130 Sum_probs=83.9
Q ss_pred EEECCCCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCC-------CCC
Q ss_conf 42057887321120----1148469970787534479999999999856801107999723421000125-------775
Q gi|254780606|r 396 LGKTISGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYD-------GIP 464 (744)
Q Consensus 396 ~g~~~~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~-------~~p 464 (744)
...+-.+++++-|+ .+.=.+.|.|.+|||||++++.|+ +|+. ..-.+.+--+|........+. .-+
T Consensus 10 ~~Y~~~~~~vL~~isf~I~~Ge~vaIvG~sGsGKSTLl~lL~-gl~~--~~G~I~idg~~i~~~~~~~~r~~i~~vpQ~~ 86 (275)
T cd03289 10 AKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLN--TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKV 86 (275)
T ss_pred EEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHH-HHCC--CCCEEEECCEECCCCCHHHHHHHEEEECCCC
T ss_conf 996899966242507998799999999999997999999996-0357--8953999988067368999976389966556
Q ss_pred CEEEEEE-ECH--------HHHHHHHHHH-----HHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 2000044-441--------7876899999-----9866769999998077867-99999886420267766654323386
Q gi|254780606|r 465 HLLTPVV-TNP--------KKAVMALKWA-----VREMEERYRKMSHLSVRNI-KSYNERISTMYGEKPQGCGDDMRPMP 529 (744)
Q Consensus 465 h~~~~v~-~~~--------~~~~~~l~~~-----~~em~~r~~~~~~~~~~~i-~~~n~~~~~~~~~~~~~~~~~~~~~p 529 (744)
.++..-+ .+. ++...+++.+ +..+...+...-..+..++ .+-.+|+.-.+.-.. -|
T Consensus 87 ~lf~~Ti~eNl~~~~~~~~~~i~~~~~~~~l~~~i~~lp~~ld~~~~~~g~~LSgGqkQrl~lARaLl~---------~p 157 (275)
T cd03289 87 FIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLS---------KA 157 (275)
T ss_pred CCCCCCHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHC---------CC
T ss_conf 326741999703212228899999999976699998573667403268887239999999999999951---------99
Q ss_pred EEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCC
Q ss_conf 79998445687675310358999999999642013589998516544441467885056305720368111003267631
Q gi|254780606|r 530 YIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHG 609 (744)
Q Consensus 530 ~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~g 609 (744)
. |++.||-.--+.. .-+..|.+.-+. ...|.-+|+.|.|.+ .++. + -||.+= |.=.|...+-
T Consensus 158 ~-IllLDEpTs~LD~---~te~~i~~~l~~-~~~~~TvI~itHrl~------~~~~-~-DrIlvl-----d~G~Ive~Gt 219 (275)
T cd03289 158 K-ILLLDEPSAHLDP---ITYQVIRKTLKQ-AFADCTVILSEHRIE------AMLE-C-QRFLVI-----EENKVRQYDS 219 (275)
T ss_pred C-EEEEECCCCCCCH---HHHHHHHHHHHH-HCCCCEEEEEECCHH------HHHH-C-CEEEEE-----ECCEEEEECC
T ss_conf 9-8999797668999---999999999999-729998999943888------8986-9-999999-----8999999789
Q ss_pred HHHHCCCCCEE
Q ss_conf 68856898468
Q gi|254780606|r 610 AEQLLGRGDML 620 (744)
Q Consensus 610 ae~l~g~gd~l 620 (744)
-+.||.++-+.
T Consensus 220 ~eeLl~~~~~y 230 (275)
T cd03289 220 IQKLLNEKSHF 230 (275)
T ss_pred HHHHHHCCCCH
T ss_conf 89998678915
No 139
>PRK10744 phosphate transporter subunit; Provisional
Probab=95.93 E-value=0.11 Score=30.43 Aligned_cols=44 Identities=25% Similarity=0.345 Sum_probs=28.9
Q ss_pred EEEEEEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 689842057887321120114846997078753447999999999
Q gi|254780606|r 392 LALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSL 436 (744)
Q Consensus 392 l~~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl 436 (744)
|.+..|+...=+-|-+++.+.=-+-+.|..|+|||++++. |.+|
T Consensus 16 ls~~yg~~~aL~~vsl~i~~Ge~~~liG~nGaGKSTLlk~-i~gl 59 (257)
T PRK10744 16 LNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRT-FNKM 59 (257)
T ss_pred EEEEECCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHH-HHHH
T ss_conf 8999699767814289988998999999999819999999-9876
No 140
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.93 E-value=0.018 Score=35.91 Aligned_cols=158 Identities=20% Similarity=0.283 Sum_probs=82.4
Q ss_pred CEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCC----CCCCC---EEEE-E
Q ss_conf 7321120----114846997078753447999999999985680110799972342100012----57752---0000-4
Q gi|254780606|r 403 ESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVY----DGIPH---LLTP-V 470 (744)
Q Consensus 403 ~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~----~~~ph---~~~~-v 470 (744)
+|++-|+ ...--+-|-|-.|||||.+.+.++-. +......|+|-.-|.+.-+...+ --+|+ |+.. |
T Consensus 349 ~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~--w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTI 426 (580)
T COG4618 349 KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGI--WPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTI 426 (580)
T ss_pred CCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCC--CCCCCCCEEECCHHHHCCCHHHHCCCCCCCCCCCEECCCCH
T ss_conf 7612062367658866788788876577899999811--35678737756264512798885113172765430057719
Q ss_pred ---------EECHHHHHHHHHHH-HHHHHHHH----HHHHHCCCCCH-HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEH
Q ss_conf ---------44417876899999-98667699----99998077867-99999886420267766654323386799984
Q gi|254780606|r 471 ---------VTNPKKAVMALKWA-VREMEERY----RKMSHLSVRNI-KSYNERISTMYGEKPQGCGDDMRPMPYIVIIV 535 (744)
Q Consensus 471 ---------~~~~~~~~~~l~~~-~~em~~r~----~~~~~~~~~~i-~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvvi 535 (744)
-.|.++...+-+.+ +.||--|. +..--.+-..+ .+-.+|+.-.+.-+ ..|++| |.
T Consensus 427 aeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlY---------G~P~lv-VL 496 (580)
T COG4618 427 AENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALY---------GDPFLV-VL 496 (580)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC---------CCCCEE-EE
T ss_conf 99987316668879999999873758999717687667657898877723789999999970---------897089-95
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 4568767531035899999999964201358999851654
Q gi|254780606|r 536 DEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 536 DE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
||=+.=. ..+-|.++.+--.-.|+.|+-.|+.|+||+
T Consensus 497 DEPNsNL---D~~GE~AL~~Ai~~~k~rG~~vvviaHRPs 533 (580)
T COG4618 497 DEPNSNL---DSEGEAALAAAILAAKARGGTVVVIAHRPS 533 (580)
T ss_pred CCCCCCC---CHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 5898776---526799999999999976987999926777
No 141
>PRK08506 replicative DNA helicase; Provisional
Probab=95.91 E-value=0.074 Score=31.74 Aligned_cols=148 Identities=19% Similarity=0.234 Sum_probs=77.3
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEE-------CCCCCCC--CEEEEEEECHHHHHH
Q ss_conf 0114846997078753447999999999985680110799972342100-------0125775--200004444178768
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLEL-------SVYDGIP--HLLTPVVTNPKKAVM 479 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~-------~~~~~~p--h~~~~v~~~~~~~~~ 479 (744)
|.+.--++|||.+|+|||.|..+|....+.... ..+++-.-|..- +...+++ .+...-.++.+ ..
T Consensus 190 l~~gdLiIIAARPsmGKTAfAlniA~~~a~~~~----~V~~FSLEMs~~ql~~Rlls~~s~V~~~~lr~g~l~~~e--~~ 263 (473)
T PRK08506 190 FNKGDLIIIAARPSMGKTTLVLNMVLKALNQGK----GVAFFSLEMPAEQLMLRMLSAKTSIPLQNLRTGDLDDDE--WE 263 (473)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC----CEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH--HH
T ss_conf 985627999507998678999999999996599----658982247999999999997288783100068999999--99
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC------HHHHHHH
Q ss_conf 9999998667699999980778679999988642026776665432338679998445687675310------3589999
Q gi|254780606|r 480 ALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG------KEIEGAI 553 (744)
Q Consensus 480 ~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~------~~~e~~~ 553 (744)
.+.+++.+|...--.+.....-++.+..++.+....... .+- +||||=+. ||...+ .++...-
T Consensus 264 ~~~~a~~~l~~~~l~IdD~~~lti~~Ira~~Rr~k~~~~--------~l~--livIDYLQ-Lm~~~~~~~~R~~ev~~IS 332 (473)
T PRK08506 264 NLSDACDELSQKKLFVYDSGYVNIHQVRAQLRKLKSQHP--------EIG--LAVIDYLQ-LMSGSKNFKDRHLQISEIS 332 (473)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCC--------CCC--EEEEEHHH-HCCCCCCCCCHHHHHHHHH
T ss_conf 999999998659889988999999999999999999769--------987--89963675-5468887530889999999
Q ss_pred HHHHHHHHCCEEEEEEEECC
Q ss_conf 99999642013589998516
Q gi|254780606|r 554 QRLAQMARAAGIHLIMATQR 573 (744)
Q Consensus 554 ~~la~~~ra~GihlilatQr 573 (744)
..|-++|+-++|-+|+-+|=
T Consensus 333 r~LK~lAkEl~vPViaLSQL 352 (473)
T PRK08506 333 RGLKLLARELDIPIIALSQL 352 (473)
T ss_pred HHHHHHHHHHCCCEEEECCC
T ss_conf 99999999969979997036
No 142
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.89 E-value=0.01 Score=37.65 Aligned_cols=148 Identities=21% Similarity=0.296 Sum_probs=74.6
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC---------------CCEECCCCCCCCEEEE
Q ss_conf 2112011484699707875344799999999998568011079997234---------------2100012577520000
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK---------------MLELSVYDGIPHLLTP 469 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k---------------~~~~~~~~~~ph~~~~ 469 (744)
+-+++.+.--+.|-|..|||||++|+. |.+|. .|+.=++++-+-. +.-|-.|.-+||+
T Consensus 19 vsl~i~~Ge~~~ivGpSGsGKSTLL~~-i~gL~---~p~~G~i~i~g~~i~~~~~~~~~~rr~iG~VFQ~~~L~p~l--- 91 (213)
T cd03262 19 IDLTVKKGEVVVIIGPSGSGKSTLLRC-INLLE---EPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHL--- 91 (213)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCEEEEECCEECCCCHHHHHHHHCCCEEEECCCCCCCCC---
T ss_conf 075988998999999998449999999-98199---99864999999999998156999867827996798758999---
Q ss_pred EEECHHHHHHHHHHH----HHHHHHH-HHHHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEH
Q ss_conf 444417876899999----9866769-99999807786799---------999886420267766654323386799984
Q gi|254780606|r 470 VVTNPKKAVMALKWA----VREMEER-YRKMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIV 535 (744)
Q Consensus 470 v~~~~~~~~~~l~~~----~~em~~r-~~~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvvi 535 (744)
|-.+.....+.+. ..|..+| .+++...|..+... -.+|++-.+.-. .-|.| ++.
T Consensus 92 --tv~eNV~~~l~~~~~~~~~e~~~~a~~~L~~vgL~~~~~~~P~~LSGGqqQRVAIARALa---------~~P~i-lL~ 159 (213)
T cd03262 92 --TVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA---------MNPKV-MLF 159 (213)
T ss_pred --CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCCHHHHHHHHHHHHC---------CCCCE-EEE
T ss_conf --199999999999769999999999999998689978874994446929999999999963---------79999-997
Q ss_pred HH-HHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 45-68767531035899999999964201358999851654
Q gi|254780606|r 536 DE-MADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 536 DE-~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
|| ++.|-.....++.+.|.+|. +. |+-+|+.|.-+.
T Consensus 160 DEPts~LD~~~~~~i~~ll~~l~---~~-g~T~i~VTHD~~ 196 (213)
T cd03262 160 DEPTSALDPELVGEVLDVMKDLA---EE-GMTMVVVTHEMG 196 (213)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH---HC-CCEEEEECCCHH
T ss_conf 08888779899999999999998---62-999999998999
No 143
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=95.85 E-value=0.0029 Score=41.34 Aligned_cols=228 Identities=25% Similarity=0.398 Sum_probs=119.3
Q ss_pred EE-EEECCCCEEEE---ECCCCCCCEEEHHHHHCCHHHCCCCCCEEEEEEECCCCCEEECCHHHCCCE--EEEECCCCCH
Q ss_conf 27-75189834544---268888870765875128121146783689842057887321120114846--9970787534
Q gi|254780606|r 352 RV-AVIPKRNAIGI---ELPNETRETVYLRQIIESRSFSHSKANLALCLGKTISGESVIADLANMPHI--LVAGTTGSGK 425 (744)
Q Consensus 352 ~~-~~~pg~~~~~~---~~p~~~~~~v~~~~~~~~~~~~~~~~~l~~~~g~~~~g~~~~~dl~~~PH~--lvaG~TgsGK 425 (744)
|| ..+-||. |-| .||-..=+=|-|| ||+.+.-. ..|. .||.+-+.---+-.|-++||+ ||-|=|||||
T Consensus 185 RI~Lrv~Gr~-~DiRVSt~Pt~fGERvVMR-LLDK~~~~---l~L~-~LGm~~~~l~~~~~li~rpHGIiLVTGPTGSGK 258 (495)
T TIGR02533 185 RISLRVAGRD-IDIRVSTVPTSFGERVVMR-LLDKDAVR---LDLE-ALGMSPELLSSLERLIKRPHGIILVTGPTGSGK 258 (495)
T ss_pred CEEEEECCEE-EEEEEEECCCCCCCEEEHH-HHCHHHHH---HHHH-HCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCH
T ss_conf 2666673744-6678853058997100000-11204777---7588-648888899999999718896188417789852
Q ss_pred HHHHHHHHHHHHHHCCHHHEEEEEE-CCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 4799999999998568011079997-234210001257752000044441787689999998667699999980778679
Q gi|254780606|r 426 SVAINTMIMSLLYRLRPDECRMIMV-DPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEERYRKMSHLSVRNIK 504 (744)
Q Consensus 426 S~~l~~~i~sl~~~~~p~~~~~~li-D~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r~~~~~~~~~~~i~ 504 (744)
|+-|.+-+.- -|++ +.+++=| || +|+.. .||-+....-=-++..| ..|+.. -|
T Consensus 259 tTTLYaaL~~---LN~~-~~NIlTvEDP--VEY~i-~GIgQ~Qvn~kIglTFA-~GLRaI----LR-------------- 312 (495)
T TIGR02533 259 TTTLYAALSR---LNTP-ERNILTVEDP--VEYQI-EGIGQIQVNPKIGLTFA-AGLRAI----LR-------------- 312 (495)
T ss_pred HHHHHHHHHH---HCCC-CCCEEEEECC--EEEEE-CCCCEEEECCCCCHHHH-HHHHHH----HC--------------
T ss_conf 5889999986---3589-9715686578--24762-48763651465430388-887886----42--------------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC--CC-----
Q ss_conf 99998864202677666543233867999844568767531035899999999964201358999851654--44-----
Q gi|254780606|r 505 SYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS--VD----- 577 (744)
Q Consensus 505 ~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~--~~----- 577 (744)
. | | =||.|-|..|+ .++ +||-+|==.| ||||+|=-=. +.
T Consensus 313 -------Q-----------D----P-DiiMvGEIRD~-ETA---------~IAiQASLTG-HLVLSTLHTNDAAgAvtRL 358 (495)
T TIGR02533 313 -------Q-----------D----P-DIIMVGEIRDL-ETA---------QIAIQASLTG-HLVLSTLHTNDAAGAVTRL 358 (495)
T ss_pred -------C-----------C----C-CEEEEECCCCH-HHH---------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_conf -------7-----------9----9-88998231606-899---------9999876432-5765565540154466555
Q ss_pred ------------CCHHHHHHCCCCEEEEECCCHHHC----CHHCCCCCHHHHCCCC-CEEEECCC-CCE--------EEE
Q ss_conf ------------414678850563057203681110----0326763168856898-46864689-843--------899
Q gi|254780606|r 578 ------------VITGTIKANFPIRISFQVTSKIDS----RTILGEHGAEQLLGRG-DMLYMSGG-GRI--------QRV 631 (744)
Q Consensus 578 ------------vi~~~ik~n~~~ri~~~v~~~~ds----r~il~~~gae~l~g~g-d~l~~~~~-~~~--------~r~ 631 (744)
.|.|.|=+=+==|||=.|.....- +.-+|-.-.+-.-++| |.||.+-| ++. +=+
T Consensus 359 ~DMGvEPFL~aSsl~GVLAQRLVRrlCp~Cke~y~a~~~~~~~~G~~~~~~~~~nGv~~lyr~~GC~~C~~~GY~GRtGI 438 (495)
T TIGR02533 359 IDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEATDEELALLGISKKEPKKDNGVIILYRPVGCPACNHTGYRGRTGI 438 (495)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHCCCCCEEEEECCCCCHHHCCCCCCCCEEE
T ss_conf 32586404899999999986334331514688899897999854884021035776489977876421278888355036
Q ss_pred EECCCCHHHHHHHH
Q ss_conf 93438988999999
Q gi|254780606|r 632 HGPLVSDIEIEKVV 645 (744)
Q Consensus 632 ~~~~~~~~~~~~~~ 645 (744)
+=.++=|++|.+.+
T Consensus 439 yElL~vDD~lr~lI 452 (495)
T TIGR02533 439 YELLLVDDDLRSLI 452 (495)
T ss_pred EEEEEECHHHHHHH
T ss_conf 88674355899876
No 144
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.82 E-value=0.034 Score=34.03 Aligned_cols=52 Identities=21% Similarity=0.325 Sum_probs=31.8
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEEC
Q ss_conf 211201148469970787534479999999999856801107999723421000
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELS 458 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~ 458 (744)
+-+++.+.-.+-|-|.||||||++++ +|+.+ |.-...++.+--+|-+...+.
T Consensus 354 isl~i~~Ge~vaiVG~SGsGKSTL~~-LL~gl-y~p~~G~I~idg~di~~i~~~ 405 (585)
T PRK13657 354 VSFEAKPGQTVAIVGPTGAGKSTLIN-LLHRV-FDPQSGRIRIDGTDIRTVTRA 405 (585)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHH-HHHHH-CCCCCCCEEECCEECHHCCHH
T ss_conf 03897599889998898986999999-98601-578879675898961016899
No 145
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.80 E-value=0.1 Score=30.78 Aligned_cols=39 Identities=33% Similarity=0.523 Sum_probs=26.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 84699707875344799999999998568011079997234
Q gi|254780606|r 413 PHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK 453 (744)
Q Consensus 413 PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k 453 (744)
.++||.+-||||||...-..+...+.+. ...+.+++-|.
T Consensus 1 ~~~lv~~ptGsGKT~~~~~~~~~~~~~~--~~~~~lil~Pt 39 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL--KGGQVLVLAPT 39 (144)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHC--CCCEEEEECCH
T ss_conf 9999988997179999999999999756--89769997467
No 146
>pfam00735 Septin Septin. Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerize to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis.
Probab=95.79 E-value=0.0066 Score=38.91 Aligned_cols=27 Identities=37% Similarity=0.666 Sum_probs=23.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHC
Q ss_conf 469970787534479999999999856
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRL 440 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~ 440 (744)
-+||+|.+|+|||.|||+|+.+-++..
T Consensus 6 nimvvG~sGlGKTTfiNtL~~~~~~~~ 32 (280)
T pfam00735 6 TLMVVGESGLGKTTLINTLFLTDLYPE 32 (280)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 999977999978999999857857786
No 147
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.78 E-value=0.028 Score=34.64 Aligned_cols=163 Identities=20% Similarity=0.307 Sum_probs=76.4
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEE-------------C-CCCCCCCEEE--
Q ss_conf 21120114846997078753447999999999985680110799972342100-------------0-1257752000--
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLEL-------------S-VYDGIPHLLT-- 468 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~-------------~-~~~~~ph~~~-- 468 (744)
+-+++.+.-.+.+.|..|||||++|+ +|.+|+ .|+.=++++-+-..... + .|+. +.++.
T Consensus 23 isl~i~~Ge~~~iiG~sGsGKTTll~-~i~Gl~---~p~~G~I~~~g~~i~~~~~~~~~~~rr~~Ig~v~Q~-~~L~~~l 97 (218)
T cd03255 23 VSLSIEKGEFVAIVGPSGSGKSTLLN-ILGGLD---RPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQS-FNLLPDL 97 (218)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHH-HHHCCC---CCCCEEEEECCEECCCCCHHHHHHHHHCCEEEECCC-CCCCCCC
T ss_conf 28998699899999999986999999-996699---999649999999988799899999865047898667-5215564
Q ss_pred EEEECHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHH
Q ss_conf 04444178768999999866769-99999807786799---------999886420267766654323386799984456
Q gi|254780606|r 469 PVVTNPKKAVMALKWAVREMEER-YRKMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDEM 538 (744)
Q Consensus 469 ~v~~~~~~~~~~l~~~~~em~~r-~~~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~ 538 (744)
.|..+.............+.++| .+++...+..++.. -.+|+.-.+.- -.-|- |++.||=
T Consensus 98 tV~eni~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~~~LSGG~kQRv~iAraL---------~~~P~-llllDEP 167 (218)
T cd03255 98 TALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARAL---------ANDPK-IILADEP 167 (218)
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHH---------HCCCC-EEEEECC
T ss_conf 3999999999984999899999999876767937887388763899999999999998---------55999-9998188
Q ss_pred HH-HHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEE
Q ss_conf 87-67531035899999999964201358999851654444146788505630572
Q gi|254780606|r 539 AD-LMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISF 593 (744)
Q Consensus 539 a~-l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~ 593 (744)
.- |-... ....+.-|.++.+..|+-+|++|-.++ ++ .+--||.+
T Consensus 168 Ts~LD~~~---~~~i~~~l~~l~~~~~~tii~itHd~~--~~------~~aDrv~~ 212 (218)
T cd03255 168 TGNLDSET---GKEVMELLRELNKEAGTTIVVVTHDPE--LA------EYADRIIE 212 (218)
T ss_pred CCCCCHHH---HHHHHHHHHHHHHHCCCEEEEECCCHH--HH------HHCCEEEE
T ss_conf 87689999---999999999999962989999896889--99------86998999
No 148
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.76 E-value=0.07 Score=31.88 Aligned_cols=82 Identities=21% Similarity=0.379 Sum_probs=58.4
Q ss_pred EEEEHHHHHHHHHHCC---------HHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHC
Q ss_conf 9998445687675310---------3589999999996420135899985165444414678850563057203681110
Q gi|254780606|r 531 IVIIVDEMADLMMVAG---------KEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDS 601 (744)
Q Consensus 531 ivvviDE~a~l~~~~~---------~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~ds 601 (744)
-+|+|||+..+.++-. .-+..++..|-..--.-|+-.|.||.||. .+...||+-|-.-|-|+..+...-
T Consensus 212 civFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~--~LD~aiRsRFEeEIEF~LP~~eEr 289 (368)
T COG1223 212 CIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPE--LLDPAIRSRFEEEIEFKLPNDEER 289 (368)
T ss_pred EEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHH--HCCHHHHHHHHHEEEEECCCHHHH
T ss_conf 499840024555304578864549999999998501744577569995059846--507888865565065648885899
Q ss_pred CHHCCCCCHHHHCC
Q ss_conf 03267631688568
Q gi|254780606|r 602 RTILGEHGAEQLLG 615 (744)
Q Consensus 602 r~il~~~gae~l~g 615 (744)
-.|| +.-|+++.-
T Consensus 290 ~~il-e~y~k~~Pl 302 (368)
T COG1223 290 LEIL-EYYAKKFPL 302 (368)
T ss_pred HHHH-HHHHHHCCC
T ss_conf 9999-998985897
No 149
>PTZ00301 uridine kinase; Provisional
Probab=95.76 E-value=0.017 Score=36.19 Aligned_cols=38 Identities=29% Similarity=0.386 Sum_probs=32.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECC
Q ss_conf 69970787534479999999999856801107999723
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDP 452 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~ 452 (744)
+-|||.+|||||.+-+.|+-.|..+..+..+.++.-|.
T Consensus 6 IgIaGgSgSGKTT~a~~i~~~l~~~~~~~~v~ii~~D~ 43 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDF 43 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 99968876789999999999987614998079983676
No 150
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.75 E-value=0.038 Score=33.75 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=33.3
Q ss_pred EEECCCCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECC
Q ss_conf 42057887321120----11484699707875344799999999998568011079997234210001
Q gi|254780606|r 396 LGKTISGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSV 459 (744)
Q Consensus 396 ~g~~~~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~ 459 (744)
....-..++++-|+ .+.-++.|.|.+|||||++++. |++| |.-....+.+--+|-+......
T Consensus 471 f~y~~~~~~vl~~vsl~i~~Ge~vaIvG~sGsGKSTL~kl-l~Gl-~~p~~G~i~idg~~~~~~~~~~ 536 (694)
T TIGR03375 471 FAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKL-LLGL-YQPTEGSVLLDGVDIRQIDPAD 536 (694)
T ss_pred EECCCCCCHHHCCHHHEECCCCEEEEEECCCCCHHHHHHH-HCCC-CCCCCCEEEECCEECCCCCHHH
T ss_conf 9879889222136311887997899980589878899998-5567-5899887998985425499999
No 151
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.74 E-value=0.087 Score=31.23 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=33.5
Q ss_pred EEEEEEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE
Q ss_conf 6898420578873211201148469970787534479999999999856801107999
Q gi|254780606|r 392 LALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM 449 (744)
Q Consensus 392 l~~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l 449 (744)
|....|....=+-|-+++.+.=.+-|.|..|||||++++. |.+|. .|+.=++.+
T Consensus 8 ls~~yg~~~aL~dvsl~i~~Ge~~~iiG~nGaGKSTLl~~-l~gl~---~p~~G~i~i 61 (242)
T PRK11124 8 INCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRV-LNLLE---MPRSGTLNI 61 (242)
T ss_pred EEEEECCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHH-HHCCC---CCCCEEEEE
T ss_conf 9999899998942077887998999999999719999999-96588---888608999
No 152
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=95.73 E-value=0.017 Score=36.19 Aligned_cols=206 Identities=18% Similarity=0.308 Sum_probs=96.5
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE--ECCCCC-EE--------CCCCCCC-CEEEEEEE
Q ss_conf 211201148469970787534479999999999856801107999--723421-00--------0125775-20000444
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM--VDPKML-EL--------SVYDGIP-HLLTPVVT 472 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l--iD~k~~-~~--------~~~~~~p-h~~~~v~~ 472 (744)
+-+++.+.=-+.|.|..|||||++++. |.+|+ .|..=++++ .|.+.. .+ ..|++.- +++...+
T Consensus 30 Isl~i~~GE~v~iiG~nGsGKSTL~r~-l~gl~---~P~~G~I~i~G~~~~~~~~~~~~r~~ig~vfQ~P~~~l~~~tV- 104 (281)
T PRK13633 30 VNLEVKKGEFLVILGHNGSGKSTIAKH-MNALL---LPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIV- 104 (281)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCCEEEECCEECCCHHHHHHHHHCEEEEEECCCCCCCHHHH-
T ss_conf 076887998999999999849999999-97588---7888569999998788566999873608986688642028899-
Q ss_pred CHHHHHHHHHH---HHHHHHHH-HHHHHHCCCCCHHHHH---------HHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHH
Q ss_conf 41787689999---99866769-9999980778679999---------98864202677666543233867999844568
Q gi|254780606|r 473 NPKKAVMALKW---AVREMEER-YRKMSHLSVRNIKSYN---------ERISTMYGEKPQGCGDDMRPMPYIVIIVDEMA 539 (744)
Q Consensus 473 ~~~~~~~~l~~---~~~em~~r-~~~~~~~~~~~i~~~n---------~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a 539 (744)
.+..+-.+.. -..++++| .+.+...|..++.+.. +|++-... +.--|- +++.||=.
T Consensus 105 -~e~i~fg~~~~g~~~~e~~~rv~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiA~a---------La~~P~-iLilDEPT 173 (281)
T PRK13633 105 -EEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGI---------LAMRPE-CIIFDEPT 173 (281)
T ss_pred -HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHCCHHHHHHHHHHHH---------HHCCCC-EEEEECCC
T ss_conf -9999988988699999999999999986794876638910089859999999999---------985999-99981873
Q ss_pred H-HHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCCCC
Q ss_conf 7-675310358999999999642013589998516544441467885056305720368111003267631688568984
Q gi|254780606|r 540 D-LMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGD 618 (744)
Q Consensus 540 ~-l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~gd 618 (744)
. |-.....++ +.-|-++.+..|+-+|+.|.+.+ . + +. ..||.+-- +-++|.+ +-.+.++.+-+
T Consensus 174 s~LDp~~~~~i---~~~l~~l~~e~g~Tii~vTHdl~--~----~-~~-aDrv~vm~----~G~Iv~~-G~p~evf~~~~ 237 (281)
T PRK13633 174 AMLDPSGRREV---VNTIKELNKKYGITIILITHYME--E----A-VE-ADRIIVMD----KGKVVME-GTPKEIFKEVE 237 (281)
T ss_pred CCCCHHHHHHH---HHHHHHHHHHCCCEEEEECCCHH--H----H-HC-CCEEEEEE----CCEEEEE-CCHHHHHCCHH
T ss_conf 43898999999---99999999840989999867889--9----9-73-99899998----9999997-79999976988
Q ss_pred EEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCC
Q ss_conf 68646898438999343898899999999984088
Q gi|254780606|r 619 MLYMSGGGRIQRVHGPLVSDIEIEKVVQHLKKQGC 653 (744)
Q Consensus 619 ~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 653 (744)
.|...+ +.-.++-++...++..|-
T Consensus 238 ~L~~~~-----------l~~P~~~~l~~~L~~~g~ 261 (281)
T PRK13633 238 MMKKIG-----------LDVPQVTELAYELRKEGV 261 (281)
T ss_pred HHHHCC-----------CCCCCHHHHHHHHHHCCC
T ss_conf 999779-----------999919999999997499
No 153
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.73 E-value=0.068 Score=31.99 Aligned_cols=29 Identities=31% Similarity=0.437 Sum_probs=19.9
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 21120114846997078753447999999
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMI 433 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i 433 (744)
+-+++.+.==+.|.|..|||||+++..+|
T Consensus 14 Vsl~i~~Ge~~aIvG~nGsGKSTL~~~~l 42 (226)
T cd03270 14 VDVDIPRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 48998599899998789960989836166
No 154
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.73 E-value=0.098 Score=30.89 Aligned_cols=38 Identities=29% Similarity=0.251 Sum_probs=26.1
Q ss_pred ECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEE
Q ss_conf 112011484699707875344799999999998568011079
Q gi|254780606|r 406 IADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRM 447 (744)
Q Consensus 406 ~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~ 447 (744)
-+++.+.--+-+.|..|||||++++. |++++ .|+.=++
T Consensus 44 sf~i~~GEivgllG~NGaGKSTLlk~-I~Gl~---~P~~G~I 81 (264)
T PRK13546 44 SLKAYEGDVIGLVGINGSGKSTLSNI-IGGSL---SPTVGKV 81 (264)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCCEE
T ss_conf 78885998999998998619999999-96798---8887479
No 155
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.71 E-value=0.1 Score=30.75 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=26.2
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 484699707875344799999999998568011079997234
Q gi|254780606|r 412 MPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK 453 (744)
Q Consensus 412 ~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k 453 (744)
.==.+|+|..|+|||.++..+....+ -..-+.+.||-.
T Consensus 19 G~it~i~G~pG~GKStl~lq~a~~~~----~~g~~v~YidtE 56 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETA----GQGKKVAYIDTE 56 (218)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH----HCCCEEEEEECC
T ss_conf 87999989999849999999999986----369869999665
No 156
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.71 E-value=0.039 Score=33.61 Aligned_cols=206 Identities=18% Similarity=0.288 Sum_probs=95.1
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC--CC-------------CCEECCCCCCC--CEE
Q ss_conf 21120114846997078753447999999999985680110799972--34-------------21000125775--200
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD--PK-------------MLELSVYDGIP--HLL 467 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD--~k-------------~~~~~~~~~~p--h~~ 467 (744)
+-+++.+.--+.|-|.+|||||++++ +|.+|+ .|..=++.+-+ .. .+.+ .|+. | .++
T Consensus 26 vsl~I~~Ge~~~iiG~nGsGKSTLl~-~l~Gll---~P~sG~V~i~G~~i~~~~~~~~~~~~r~~vg~-vfQ~-p~~ql~ 99 (286)
T PRK13641 26 ISFELEDGSFVALIGHTGSGKSTLMQ-HFNALL---KPSSGKITIAGYHITPETSNKNLKDLRKKVGL-VFQF-PEAQLF 99 (286)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHH-HHHCCC---CCCCEEEEECCEECCCCCCHHHHHHHHHHEEE-EEEC-CCCCCC
T ss_conf 06798699999999999839999999-996598---98854999998999766655579999851548-9766-510126
Q ss_pred EE-EEECHHHHHHHHHHHHHHHHHH-HHHHHHCCCC-CHHH-H--------HHHHHHHHCCCCCCCCCCCCCCCEEEEEH
Q ss_conf 00-4444178768999999866769-9999980778-6799-9--------99886420267766654323386799984
Q gi|254780606|r 468 TP-VVTNPKKAVMALKWAVREMEER-YRKMSHLSVR-NIKS-Y--------NERISTMYGEKPQGCGDDMRPMPYIVIIV 535 (744)
Q Consensus 468 ~~-v~~~~~~~~~~l~~~~~em~~r-~~~~~~~~~~-~i~~-~--------n~~~~~~~~~~~~~~~~~~~~~p~ivvvi 535 (744)
.. |..+.......+.+-..++.+| .+.+...+.. ++.+ | .+|++-... +.--|. +++.
T Consensus 100 ~~tV~eev~~g~~~~g~~~~e~~~~~~~~l~~vgl~~~~~~~~p~~LSGGqkqRvaiA~a---------La~~P~-iLlL 169 (286)
T PRK13641 100 ENTVLKDVEFGPKNFGFSEQEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGV---------MAYEPE-ILCL 169 (286)
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHHCCHHHHHHHHHHHH---------HHCCCC-EEEE
T ss_conf 112999999999986999899999999999976996455542913299999999999999---------974999-9997
Q ss_pred HHHHH-HHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHC
Q ss_conf 45687-67531035899999999964201358999851654444146788505630572036811100326763168856
Q gi|254780606|r 536 DEMAD-LMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLL 614 (744)
Q Consensus 536 DE~a~-l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~ 614 (744)
||=.. |-....+++...|.+|. ..|.-+|++|...+ .+ +.+-.||.+= .+-|+|.+.. .+.++
T Consensus 170 DEPTsgLDp~~~~~i~~ll~~l~----~~G~Tii~vtHd~~--~v-----~~~adrv~vm----~~G~iv~~G~-p~evf 233 (286)
T PRK13641 170 DEPAAGLDPEGRKEMMQIFKDYQ----KAGHTVILVTHNMD--DV-----AEYADDVLVL----EHGKLIKHAS-PKEIF 233 (286)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH----HCCCEEEEECCCHH--HH-----HHHCCEEEEE----ECCEEEEECC-HHHHH
T ss_conf 39734389999999999999999----63999999915999--99-----9979999999----8999999779-99996
Q ss_pred CCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCC
Q ss_conf 898468646898438999343898899999999984088
Q gi|254780606|r 615 GRGDMLYMSGGGRIQRVHGPLVSDIEIEKVVQHLKKQGC 653 (744)
Q Consensus 615 g~gd~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 653 (744)
.+=|.|. .+++...++-+++..+++.|-
T Consensus 234 ~~~~~l~-----------~~~l~~P~~~~~~~~L~~~g~ 261 (286)
T PRK13641 234 SDSEWLK-----------KHYLDEPATSRFASKLEKGGF 261 (286)
T ss_pred CCHHHHH-----------HCCCCCCHHHHHHHHHHHCCC
T ss_conf 5999999-----------779999939999999997599
No 157
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.69 E-value=0.02 Score=35.58 Aligned_cols=154 Identities=17% Similarity=0.271 Sum_probs=71.3
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEEC--------CCCCCC--CEEEEEE-EC
Q ss_conf 211201148469970787534479999999999856801107999723421000--------125775--2000044-44
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELS--------VYDGIP--HLLTPVV-TN 473 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~--------~~~~~p--h~~~~v~-~~ 473 (744)
+-+.+.+.-.+.|.|..|||||++++. |.+|+ +-+-.++.+.-.|....... .|++ | +++...+ .+
T Consensus 24 vs~~i~~Ge~~aiiG~NGsGKSTLl~~-l~Gl~-~p~~G~I~i~G~~i~~~~~~~lr~~iG~vfQ~-p~~ql~~~tV~e~ 100 (273)
T PRK13647 24 VSLVIPEGSKTAILGPNGAGKSTLLLH-LNGIY-TAQRGRVKVMGKVVNEENIRWIRKKVGLVFQD-PDDQLFSSTVWDD 100 (273)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC-CCCCEEEEECCEECCCCCHHHHHHHCEEEECC-CHHHHCCCHHHHH
T ss_conf 178988998999999999759999999-96698-88861999999999968989998752488107-0243052419999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHCCCCCHHHH---------HHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHH-HH
Q ss_conf 1787689999998667699-99998077867999---------9988642026776665432338679998445687-67
Q gi|254780606|r 474 PKKAVMALKWAVREMEERY-RKMSHLSVRNIKSY---------NERISTMYGEKPQGCGDDMRPMPYIVIIVDEMAD-LM 542 (744)
Q Consensus 474 ~~~~~~~l~~~~~em~~r~-~~~~~~~~~~i~~~---------n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~-l~ 542 (744)
.......+..-.+++++|. +.+...+..++.+. .+|++-... +-.-|. +++.||=.. |-
T Consensus 101 v~fg~~~~g~~~~e~~~rv~~~L~~~~l~~~~~~~p~~LSGGqkqRvaiA~a---------L~~~P~-lliLDEPtagLD 170 (273)
T PRK13647 101 VAFGPQNLELDKKEILRRVEEALKAVDMWDLREKAPYHLSYGQKKRVAIAGV---------LAMEPD-IIVLDEPMAYLD 170 (273)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHH---------HHHCCC-EEEEECCCCCCC
T ss_conf 9999988599999999999999987795876647933399989999999999---------981999-999979765799
Q ss_pred HHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 531035899999999964201358999851654
Q gi|254780606|r 543 MVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 543 ~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
.....++...|.+|.+ -|+-+|++|.+.+
T Consensus 171 p~~~~~l~~~l~~L~~----~G~Tvi~vtHdl~ 199 (273)
T PRK13647 171 PRGKEELTAILNRLNN----EGKTVIVATHDVD 199 (273)
T ss_pred HHHHHHHHHHHHHHHH----CCCEEEEEECCHH
T ss_conf 9999999999999984----8999999941789
No 158
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=95.69 E-value=0.021 Score=35.46 Aligned_cols=157 Identities=17% Similarity=0.236 Sum_probs=71.1
Q ss_pred CCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHH-CCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHH-
Q ss_conf 87321120----114846997078753447999999999985-680110799972342100012577520000444417-
Q gi|254780606|r 402 GESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYR-LRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPK- 475 (744)
Q Consensus 402 g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~-~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~- 475 (744)
+++++-|+ .+.-.+-|-|..|||||+++++++ +++.. ..+.. --+++|-+.+....+.+ +.+.-|.-++.
T Consensus 15 ~~~vL~~Isl~v~~Ge~~aiiG~SGsGKStl~k~ll-gll~~~~~~~~-G~i~~dg~~~~~~~~r~--r~i~~v~Q~p~~ 90 (254)
T PRK10418 15 AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAAL-GILPAGVRQTA-GRVLADGKPVAPCALRG--RKIATIMQNPRS 90 (254)
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCCEEC-CEEEECCEECCHHHHCC--CCEEEEEECCHH
T ss_conf 970886607289899999999999878999999995-79988984157-89999999996034305--508999837522
Q ss_pred ----------HHHHHHHHH-HHHHHHH-HHHHHHCCCCCHHHHHH------------HHHHHHCCCCCCCCCCCCCCCEE
Q ss_conf ----------876899999-9866769-99999807786799999------------88642026776665432338679
Q gi|254780606|r 476 ----------KAVMALKWA-VREMEER-YRKMSHLSVRNIKSYNE------------RISTMYGEKPQGCGDDMRPMPYI 531 (744)
Q Consensus 476 ----------~~~~~l~~~-~~em~~r-~~~~~~~~~~~i~~~n~------------~~~~~~~~~~~~~~~~~~~~p~i 531 (744)
.....+... ..+.+.+ .+.+...|..+...+-. |+.-.+.- -.-|.
T Consensus 91 ~~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~l~~~P~qLSGGq~QRvaiArAL---------~~~P~- 160 (254)
T PRK10418 91 AFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIALAL---------LCEAP- 160 (254)
T ss_pred HCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHCHHHCCHHHHHHHHHHHHH---------HCCCC-
T ss_conf 13768899999999998658205999999999983999868876419263487999999999998---------54999-
Q ss_pred EEEHHHHH-HHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 99844568-767531035899999999964201358999851654
Q gi|254780606|r 532 VIIVDEMA-DLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 532 vvviDE~a-~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
+++.||=- .|-.....++.+.|.+ +.+..|+-+|+.|....
T Consensus 161 lLilDEPTs~LD~~~~~~il~ll~~---l~~~~g~tii~vTHDl~ 202 (254)
T PRK10418 161 FIIADEPTTDLDVVAQARILDLLES---IVQKRALGMLLVTHDMG 202 (254)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHH---HHHHHCCEEEEEECCHH
T ss_conf 8985587543799999999999999---99970997999969999
No 159
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=95.68 E-value=0.082 Score=31.41 Aligned_cols=34 Identities=24% Similarity=0.502 Sum_probs=24.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 4699707875344799999999998568011079997234
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK 453 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k 453 (744)
=+++||..|||||.+.+.++-.+. ...++.||+-
T Consensus 14 ai~laG~pGAGKS~~~~~~~~~~~------~~~~v~In~D 47 (191)
T pfam06414 14 AVLLGGQPGAGKTELARALLEELG------GGNVVRIDPD 47 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC------CCCCEEECCH
T ss_conf 999957998888999999987537------8993897135
No 160
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.67 E-value=0.18 Score=29.07 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 6997078753447999999999985
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYR 439 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~ 439 (744)
.||+|.+|+|||.|-..++...+.+
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~~ 26 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR 26 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 1587689999999999999999876
No 161
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.66 E-value=0.046 Score=33.12 Aligned_cols=170 Identities=23% Similarity=0.320 Sum_probs=78.4
Q ss_pred HCCC-EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEE-CCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHH
Q ss_conf 1484-699707875344799999999998568011079997-23421000125775200004444178768999999866
Q gi|254780606|r 411 NMPH-ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMV-DPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREM 488 (744)
Q Consensus 411 ~~PH-~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~li-D~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em 488 (744)
++|| +|+.|-.|.||+.+...+.-.|.-......-..... .++......+ +.++.-...|..... .....++++
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~d~lel~~s~~~~~~-i~~~~vr~~ 97 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNH---PDFLELNPSDLRKID-IIVEQVREL 97 (325)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCC---CCEEEECCCCCCCCC-CHHHHHHHH
T ss_conf 8876100379999978999999999965866433455200224443202568---865997732133330-069999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 76999999807786799999886420267766654323386799984456876753103589999999996420135899
Q gi|254780606|r 489 EERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLI 568 (744)
Q Consensus 489 ~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihli 568 (744)
.+- ..... ..-++-||+|||.-.+.. +....+.+.-..-......++
T Consensus 98 ~~~------------------~~~~~-----------~~~~~kviiidead~mt~----~A~nallk~lEep~~~~~~il 144 (325)
T COG0470 98 AEF------------------LSESP-----------LEGGYKVVIIDEADKLTE----DAANALLKTLEEPPKNTRFIL 144 (325)
T ss_pred HHH------------------CCCCC-----------CCCCCEEEEEECCCCCCH----HHHHHHHHHCCCCCCCEEEEE
T ss_conf 986------------------04465-----------667726999732032698----888767543324888716999
Q ss_pred EEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHC--CCCCEEE
Q ss_conf 9851654444146788505630572036811100326763168856--8984686
Q gi|254780606|r 569 MATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLL--GRGDMLY 621 (744)
Q Consensus 569 latQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~--g~gd~l~ 621 (744)
+| -+|+ .+++ .|+.. -.+|-|+..+....-..+-..+-+.+. -.|||..
T Consensus 145 ~~-n~~~-~il~-tI~SR-c~~i~f~~~~~~~~i~~~e~~~l~~i~~~~~gd~r~ 195 (325)
T COG0470 145 IT-NDPS-KILP-TIRSR-CQRIRFKPPSRLEAIAWLEDQGLEEIAAVAEGDARK 195 (325)
T ss_pred EE-CCHH-HCHH-HHHHH-EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 74-9855-5647-87756-078876774188999985075799999870406887
No 162
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=95.62 E-value=0.021 Score=35.51 Aligned_cols=35 Identities=43% Similarity=0.674 Sum_probs=27.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCC
Q ss_conf 46997078753447999999999985680110799972342
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKM 454 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~ 454 (744)
|+||.|.||||||+.+ +|-.|+. + ++ .++++|+|+
T Consensus 1 H~lvig~tGsGKt~~~--vip~ll~-~-~~--s~vv~D~Kg 35 (384)
T cd01126 1 HVLVFAPTRSGKGVGF--VIPNLLT-W-PG--SVVVLDPKG 35 (384)
T ss_pred CEEEECCCCCCHHHHH--HHHHHHH-C-CC--CEEEEECCH
T ss_conf 9799889999731899--9999981-8-99--889994878
No 163
>KOG0924 consensus
Probab=95.59 E-value=0.15 Score=29.67 Aligned_cols=243 Identities=23% Similarity=0.340 Sum_probs=123.5
Q ss_pred CCCEEEEECCCCCCCEEEHHHHHC-CHHHCCCCCCEEEEEEECCCCC----EEEC---CH----HHCCCEEEEECCCCCH
Q ss_conf 983454426888887076587512-8121146783689842057887----3211---20----1148469970787534
Q gi|254780606|r 358 KRNAIGIELPNETRETVYLRQIIE-SRSFSHSKANLALCLGKTISGE----SVIA---DL----ANMPHILVAGTTGSGK 425 (744)
Q Consensus 358 g~~~~~~~~p~~~~~~v~~~~~~~-~~~~~~~~~~l~~~~g~~~~g~----~~~~---dl----~~~PH~lvaG~TgsGK 425 (744)
-.+.+|||-+|..-..|.+|.-.. ....+.+.+...++-+|++.-. |++. +| .+.--++|.|.|||||
T Consensus 305 lgn~~glek~~~ed~~~~~~~~~~~a~h~k~~~a~~~fa~~k~i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGK 384 (1042)
T KOG0924 305 LGNVMGLEKKNDEDGKVAYRGSVKFASHMKKSEAVSEFASKKSIREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGK 384 (1042)
T ss_pred HCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEECCCCCC
T ss_conf 31331325676533322333322454220013331001331108988750655788999999986385799993588985
Q ss_pred HHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 479999999999856801107999723421000125775200004444178--768999999866769999998077867
Q gi|254780606|r 426 SVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKK--AVMALKWAVREMEERYRKMSHLSVRNI 503 (744)
Q Consensus 426 S~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~--~~~~l~~~~~em~~r~~~~~~~~~~~i 503 (744)
|.-|--. ||.. .|.+ .. .-.+|.+.. |..+-+.+..||.-+. ..-
T Consensus 385 TTQl~Qy----L~ed------------------GY~~-~G--mIGcTQPRRvAAiSVAkrVa~EM~~~l--------G~~ 431 (1042)
T KOG0924 385 TTQLAQY----LYED------------------GYAD-NG--MIGCTQPRRVAAISVAKRVAEEMGVTL--------GDT 431 (1042)
T ss_pred HHHHHHH----HHHC------------------CCCC-CC--EEEECCCHHHHHHHHHHHHHHHHCCCC--------CCC
T ss_conf 0166799----9862------------------2455-87--154357227899999999999858764--------531
Q ss_pred HHHHHHHHHHHCCCCC-----------CCC--CCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEE
Q ss_conf 9999988642026776-----------665--432338679998445687675310358999999999642013589998
Q gi|254780606|r 504 KSYNERISTMYGEKPQ-----------GCG--DDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMA 570 (744)
Q Consensus 504 ~~~n~~~~~~~~~~~~-----------~~~--~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihlila 570 (744)
.+|--|+...-....+ ... ..| .-|-|||+||-.+-.. ..++-.-|.++++.-|. -+.||+.
T Consensus 432 VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L--~kYSviImDEAHERsl--NtDilfGllk~~larRr-dlKliVt 506 (1042)
T KOG0924 432 VGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDL--DKYSVIIMDEAHERSL--NTDILFGLLKKVLARRR-DLKLIVT 506 (1042)
T ss_pred CCEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHH--HHEEEEEECHHHHCCC--CHHHHHHHHHHHHHHHC-CCEEEEE
T ss_conf 12488852047876057874230577977633004--4401788511433030--05899999999987422-6359976
Q ss_pred ECCCCCCCCHHHHH---------HCCCCEEEEECCCHHHCCH-HCCCCCHHHHCC-CCCEE-EECCCCCEEEEEECCCCH
Q ss_conf 51654444146788---------5056305720368111003-267631688568-98468-646898438999343898
Q gi|254780606|r 571 TQRPSVDVITGTIK---------ANFPIRISFQVTSKIDSRT-ILGEHGAEQLLG-RGDML-YMSGGGRIQRVHGPLVSD 638 (744)
Q Consensus 571 tQrp~~~vi~~~ik---------~n~~~ri~~~v~~~~dsr~-il~~~gae~l~g-~gd~l-~~~~~~~~~r~~~~~~~~ 638 (744)
+-.-+++-+....- --||.+|-|.-.-..|.-. .+-+.=-=+|-| .||.| |+.|-
T Consensus 507 SATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGq------------- 573 (1042)
T KOG0924 507 SATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQ------------- 573 (1042)
T ss_pred ECCCCHHHHHHHHCCCCEEEECCCCCCEEEEECCCCHHHHHHHHHHHHEEEECCCCCCCEEEECCCC-------------
T ss_conf 2202489998872788601015876423777526855889999876545854468988779952787-------------
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 8999999999840
Q gi|254780606|r 639 IEIEKVVQHLKKQ 651 (744)
Q Consensus 639 ~~~~~~~~~~~~~ 651 (744)
++|+..++-++..
T Consensus 574 ediE~t~~~i~~~ 586 (1042)
T KOG0924 574 EDIECTCDIIKEK 586 (1042)
T ss_pred CCHHHHHHHHHHH
T ss_conf 6326789999999
No 164
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=95.59 E-value=0.18 Score=29.04 Aligned_cols=156 Identities=15% Similarity=0.170 Sum_probs=69.4
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCC---EEC--------CCCCCCCEEEEEEEC
Q ss_conf 211201148469970787534479999999999856801107999723421---000--------125775200004444
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKML---ELS--------VYDGIPHLLTPVVTN 473 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~---~~~--------~~~~~ph~~~~v~~~ 473 (744)
|-+++.+.-.+-|.|..|||||++++.| ++|. +-+..++.|--.|.... ++. .|++-...+.|..+=
T Consensus 31 vs~~i~~GE~l~ivGeSGsGKSTL~r~i-~gl~-~p~sG~I~~~g~~l~~~~~~~~~~~rr~i~~VfQ~~~~slnP~~tv 108 (266)
T PRK10419 31 VSLTLKSGETVALLGRSGCGKSTLARLL-VGLE-SPSQGNISWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTV 108 (266)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHH-HCCC-CCCCEEEEECCEECCCCCHHHHHHHHCCCEEEEECCHHHCCHHHHH
T ss_conf 1758889989999999997799999999-6699-9996299889995675899999997547389973913636816489
Q ss_pred HHHHHHHHHHH----HHHHH-HHHHHHHHCCCCC--HHHHH--------HHHHHHHCCCCCCCCCCCCCCCEEEEEHHHH
Q ss_conf 17876899999----98667-6999999807786--79999--------9886420267766654323386799984456
Q gi|254780606|r 474 PKKAVMALKWA----VREME-ERYRKMSHLSVRN--IKSYN--------ERISTMYGEKPQGCGDDMRPMPYIVIIVDEM 538 (744)
Q Consensus 474 ~~~~~~~l~~~----~~em~-~r~~~~~~~~~~~--i~~~n--------~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~ 538 (744)
.+.....|+.. ..+.. +-.+++...|... ++.|- +|+...+. +-.-|.| +|.||-
T Consensus 109 ~~~i~epl~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~yP~eLSGGq~QRVaIArA---------L~~~P~l-Li~DEP 178 (266)
T PRK10419 109 REILREPLRHLLSLDKAERLARASEMLKAVDLDDSVLDKRPPQLSGGQLQRVCLARA---------LAVEPKL-LILDEA 178 (266)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHHCCHHHHHHHHHHHH---------HCCCCCE-EEEECC
T ss_conf 999999999814999999999999999874998898717843379278777898666---------4069878-999688
Q ss_pred H-HHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 8-767531035899999999964201358999851654
Q gi|254780606|r 539 A-DLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 539 a-~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
- .|-.....++.+. |...-+..|+-+|+-|...+
T Consensus 179 tsaLD~~~q~~il~l---l~~l~~~~g~t~i~ITHDl~ 213 (266)
T PRK10419 179 VSNLDLVLQAGVIRL---LKKLQQQFGTACLFITHDLR 213 (266)
T ss_pred CCCCCHHHHHHHHHH---HHHHHHHHCCEEEEECCCHH
T ss_conf 653699999999999---99999975989999889999
No 165
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=95.58 E-value=0.0051 Score=39.72 Aligned_cols=28 Identities=39% Similarity=0.536 Sum_probs=24.1
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 4699707875344799999999998568
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLR 441 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~ 441 (744)
-+||+|.+|+|||.|||+|+.+-++...
T Consensus 6 nimVvG~sGlGKsTfiNtLf~~~~~~~~ 33 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIPSD 33 (276)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 9999768999889999997478577877
No 166
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=95.57 E-value=0.038 Score=33.69 Aligned_cols=163 Identities=20% Similarity=0.273 Sum_probs=80.0
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC-------CC----CCEECCCCCCCCEEEEEEEC
Q ss_conf 21120114846997078753447999999999985680110799972-------34----21000125775200004444
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD-------PK----MLELSVYDGIPHLLTPVVTN 473 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD-------~k----~~~~~~~~~~ph~~~~v~~~ 473 (744)
+-+++.+.--+-+-|-.|||||++|+ +|.+|. .|+.=++.+-+ ++ +.-|-.|.-.||+- |..+
T Consensus 23 vsl~i~~Ge~~~llGpsG~GKTTllr-~iaGl~---~p~~G~I~~~g~~v~~~~~~~R~i~~vfQ~~~L~p~lt--V~en 96 (358)
T PRK11650 23 IDLDVADGEFIVLVGPSGCGKSTLLR-MVAGLE---RITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMS--VREN 96 (358)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHH-HHHCCC---CCCCEEEEECCEECCCCCHHHCCEEEECCCCCCCCCCC--HHHH
T ss_conf 27798899899999998636999999-997699---98862999999999999977875767725554487874--8786
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHH-HHHH
Q ss_conf 178768999999866769999-99807786799---------999886420267766654323386799984456-8767
Q gi|254780606|r 474 PKKAVMALKWAVREMEERYRK-MSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDEM-ADLM 542 (744)
Q Consensus 474 ~~~~~~~l~~~~~em~~r~~~-~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~-a~l~ 542 (744)
........++-..++++|-.. +...+..++.+ -.+|++-.+. +-.-|.+ ++.||= +-|-
T Consensus 97 i~~~l~~~~~~~~~~~~rv~~~l~~l~l~~~~~r~p~~LSGGq~QRvalARA---------L~~~P~v-lllDEP~s~LD 166 (358)
T PRK11650 97 MAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRA---------IVREPAV-FLFDEPLSNLD 166 (358)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHCCHHHCCHHHHHHHHHHHH---------HHCCCCE-EEECCCCCCCC
T ss_conf 6557876288646788999999875226242248974789567899998357---------5049986-88738877679
Q ss_pred HHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEE
Q ss_conf 531035899999999964201358999851654444146788505630572
Q gi|254780606|r 543 MVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISF 593 (744)
Q Consensus 543 ~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~ 593 (744)
. +--......|.++-|..|+-.|+.|-... +++ .+.-||+.
T Consensus 167 ~---~~r~~~~~~l~~l~~~~g~T~i~vTHd~~-eA~------~laDri~v 207 (358)
T PRK11650 167 A---KLRVQMRLEIQRLHRRLGTTSLYVTHDQV-EAM------TLADRVVV 207 (358)
T ss_pred H---HHHHHHHHHHHHHHHHHCCEEEEEECCHH-HHH------HHCCEEEE
T ss_conf 9---89999999999999975977999989999-999------86999999
No 167
>PRK08006 replicative DNA helicase; Provisional
Probab=95.57 E-value=0.14 Score=29.73 Aligned_cols=150 Identities=16% Similarity=0.190 Sum_probs=71.5
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCE--E-----CCCCCCCC--EEEEEEECHHHHHH
Q ss_conf 011484699707875344799999999998568011079997234210--0-----01257752--00004444178768
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLE--L-----SVYDGIPH--LLTPVVTNPKKAVM 479 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~--~-----~~~~~~ph--~~~~v~~~~~~~~~ 479 (744)
|...--++|||.+|+|||.|...|+...+.+. ....+++-.-|.. + +...+++. +...-+++.++. .
T Consensus 221 l~~G~LiviaaRPsmGKTalalnia~~~a~~~---~~~V~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~g~l~~~e~~-~ 296 (471)
T PRK08006 221 LQPSDLIIVAARPSMGKTTFAMNLCENAAMLQ---DKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWA-R 296 (471)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC---CCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH-H
T ss_conf 82173899994699876999999999999866---9957998167999999999999744777554536887999999-9
Q ss_pred HHHHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC------HHHHHH
Q ss_conf 9999998-667699999980778679999988642026776665432338679998445687675310------358999
Q gi|254780606|r 480 ALKWAVR-EMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG------KEIEGA 552 (744)
Q Consensus 480 ~l~~~~~-em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~------~~~e~~ 552 (744)
+..++. .|+..--.+.....-++....++.+...... . .+ =+||||=+. ||...+ .++...
T Consensus 297 -l~~~~~~~~~~~~l~idd~~~~t~~~i~a~~r~~~~~~-----~---gl--~lvvIDYLq-L~~~~~~~~~r~~ei~~i 364 (471)
T PRK08006 297 -ISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREH-----G---GL--SLIMIDYLQ-LMRVPSLSDNRTLEIAEI 364 (471)
T ss_pred -HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHC-----C---CC--CEEEEEHHH-HCCCCCCCCCHHHHHHHH
T ss_conf -99999999751885773689998999999999999864-----8---98--689963886-616787441066899999
Q ss_pred HHHHHHHHHCCEEEEEEEECCC
Q ss_conf 9999996420135899985165
Q gi|254780606|r 553 IQRLAQMARAAGIHLIMATQRP 574 (744)
Q Consensus 553 ~~~la~~~ra~GihlilatQrp 574 (744)
-..|-++|+-++|.+|+.+|--
T Consensus 365 sr~lK~lAkel~ipVi~LsQLn 386 (471)
T PRK08006 365 SRSLKALAKELQVPVVALSQLN 386 (471)
T ss_pred HHHHHHHHHHHCCCEEEECCCC
T ss_conf 9999999999699689970168
No 168
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.57 E-value=0.15 Score=29.54 Aligned_cols=145 Identities=19% Similarity=0.312 Sum_probs=68.6
Q ss_pred HHCCC-EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCC-EE--CCCCCCCCEEEEEEECHHHHHHHHHHHH
Q ss_conf 11484-69970787534479999999999856801107999723421-00--0125775200004444178768999999
Q gi|254780606|r 410 ANMPH-ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKML-EL--SVYDGIPHLLTPVVTNPKKAVMALKWAV 485 (744)
Q Consensus 410 ~~~PH-~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~-~~--~~~~~~ph~~~~v~~~~~~~~~~l~~~~ 485 (744)
.+.+| .|-.|.-|.||+.+-+.+..+|.-.+.-.+. +|-+. +. .+..+ .|.- |+
T Consensus 36 ~ri~HAyLF~GprGtGKTT~ArilAkaLnC~~~~~~~-----~pCg~C~~C~~I~~g-~~~D--Vi-------------- 93 (462)
T PRK06305 36 NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQ-----EPCNQCAICKEISSG-TSLD--VI-------------- 93 (462)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-----CCCCCCHHHHHHHCC-CCCC--EE--------------
T ss_conf 9976234303899859999999999996799998888-----988766888998638-9998--68--------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEE
Q ss_conf 86676999999807786799999886420267766654323386799984456876753103589999999996420135
Q gi|254780606|r 486 REMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGI 565 (744)
Q Consensus 486 ~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gi 565 (744)
|++. -...|+.+|.+.+..+ .+.... -.|-|+||||...|...+ . .++-+.-- --...+
T Consensus 94 -EiDa----As~~gVddIRel~e~v---~~~P~~--------~~yKVyIIDEvhmLs~~A---f-NALLKtLE-EPP~~v 152 (462)
T PRK06305 94 -EIDG----ASHRGIEDIRQINETV---LFTPSK--------SQYKIYIIDEVHMLTKEA---F-NSLLKTLE-EPPQHV 152 (462)
T ss_pred -EECC----CCCCCHHHHHHHHHHH---CCCCCC--------CCEEEEEEECHHHCCHHH---H-HHHHHHHH-CCCCCE
T ss_conf -6435----5344668999999771---008867--------750599981521179999---9-99999861-898774
Q ss_pred EEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHH
Q ss_conf 89998516544441467885056305720368111
Q gi|254780606|r 566 HLIMATQRPSVDVITGTIKANFPIRISFQVTSKID 600 (744)
Q Consensus 566 hlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~d 600 (744)
-.||||-.|. +++. .|..-.- |+-|+--+..|
T Consensus 153 ~FILaTTe~~-KIp~-TIlSRCQ-rf~F~~i~~~~ 184 (462)
T PRK06305 153 KFFLATTEIH-KIPG-TILSRCQ-KMHLKRIPEET 184 (462)
T ss_pred EEEEEECCHH-HCCH-HHHHHHH-EEECCCCCHHH
T ss_conf 9999818814-2854-7876540-23325799999
No 169
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.54 E-value=0.066 Score=32.08 Aligned_cols=141 Identities=18% Similarity=0.199 Sum_probs=66.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCE------ECCCCC-CCCEEEEEEECHHHHHHHHHHH
Q ss_conf 484699707875344799999999998568011079997234210------001257-7520000444417876899999
Q gi|254780606|r 412 MPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLE------LSVYDG-IPHLLTPVVTNPKKAVMALKWA 484 (744)
Q Consensus 412 ~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~------~~~~~~-~ph~~~~v~~~~~~~~~~l~~~ 484 (744)
.--.|+.|.||||||...-.+|...|.... + -|+|+=-.... |..+.+ -..++..-.++. .....|.
T Consensus 217 ~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk--q-vLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~---er~~~W~ 290 (730)
T COG1198 217 FAPFLLDGVTGSGKTEVYLEAIAKVLAQGK--Q-VLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPG---ERYRVWR 290 (730)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCC--E-EEEEECCCCCHHHHHHHHHHHHCCCHHHHCCCCCHH---HHHHHHH
T ss_conf 665367677788589999999999997598--7-999956534569999999998678745314657927---8999999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCE-EEEEHHHHHHHHHHCCHHHHHHHHHHHH-HHHC
Q ss_conf 9866769999998077867999998864202677666543233867-9998445687675310358999999999-6420
Q gi|254780606|r 485 VREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPY-IVIIVDEMADLMMVAGKEIEGAIQRLAQ-MARA 562 (744)
Q Consensus 485 ~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~-ivvviDE~a~l~~~~~~~~e~~~~~la~-~~ra 562 (744)
.. ....++-+.+ ....-+-|++. =+|||||-.|-........--..-++|. +|+.
T Consensus 291 ~~---------~~G~~~vVIG--------------tRSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~ 347 (730)
T COG1198 291 RA---------RRGEARVVIG--------------TRSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK 347 (730)
T ss_pred HH---------HCCCCEEEEE--------------ECHHHCCCHHHCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 98---------5597159997--------------122330723125769970245643247777776789999999886
Q ss_pred CEEEEEEEECCCCCCCCHH
Q ss_conf 1358999851654444146
Q gi|254780606|r 563 AGIHLIMATQRPSVDVITG 581 (744)
Q Consensus 563 ~GihlilatQrp~~~vi~~ 581 (744)
.++-+||++=.||......
T Consensus 348 ~~~pvvLgSATPSLES~~~ 366 (730)
T COG1198 348 ENAPVVLGSATPSLESYAN 366 (730)
T ss_pred CCCCEEEECCCCCHHHHHH
T ss_conf 0998898268877899986
No 170
>pfam02456 Adeno_IVa2 Adenovirus IVa2 protein. IVa2 protein can interact with the adenoviral packaging signal and that this interaction involves DNA sequences that have previously been demonstrated to be required for packaging. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter.
Probab=95.54 E-value=0.0098 Score=37.74 Aligned_cols=40 Identities=28% Similarity=0.373 Sum_probs=31.0
Q ss_pred HHHCC-CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEE
Q ss_conf 01148-46997078753447999999999985680110799
Q gi|254780606|r 409 LANMP-HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMI 448 (744)
Q Consensus 409 l~~~P-H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~ 448 (744)
...-| -.+|.|-||+|||.+|+.+|.+=+..=.|+.|=|+
T Consensus 83 y~~qP~I~vVYGPTG~GKSQLlRNlis~~lI~P~PETVfFI 123 (370)
T pfam02456 83 YGLQPVIGVVYGPTGCGKSQLLRNLLSCQLIQPIPETVFFI 123 (370)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 67874499998899877899999987346677999728997
No 171
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ; InterPro: IPR013364 Proteins in this entry are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase (IPR013363 from INTERPRO) of a type-IV secretion-like system of the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii..
Probab=95.53 E-value=0.0068 Score=38.83 Aligned_cols=70 Identities=23% Similarity=0.310 Sum_probs=35.9
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE-ECCCCCEECCCCC-CC-CEEEEEEECHHHHHHHHH
Q ss_conf 148469970787534479999999999856801107999-7234210001257-75-200004444178768999
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM-VDPKMLELSVYDG-IP-HLLTPVVTNPKKAVMALK 482 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l-iD~k~~~~~~~~~-~p-h~~~~v~~~~~~~~~~l~ 482 (744)
+.-=.||+|-||||||+++-+|--- +..+-||- |++= =||=..-|.--+. +| .....|=.|.+..+..|+
T Consensus 148 ~~GLGLiCG~TGSGKSTl~AaiY~~-~l~t~pdR-KivT~EDPvEY~L~~~~~~l~ap~Q~~IGRDv~sFa~Glr 220 (374)
T TIGR02525 148 KAGLGLICGETGSGKSTLAAAIYRH-CLETYPDR-KIVTYEDPVEYILGSPDDLLPAPAQSEIGRDVESFAEGLR 220 (374)
T ss_pred CCCCEEECCCCCCCHHHHHHHHHHH-HCCCCCCC-EEEEEECCEEEECCCCCCHHCCCCCHHCCCCHHHHHHHHH
T ss_conf 0378022177897289999999998-50748897-0798657721231885201027630110687678862320
No 172
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.52 E-value=0.0076 Score=38.49 Aligned_cols=51 Identities=18% Similarity=0.324 Sum_probs=30.5
Q ss_pred CCEEECC----HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHH--EEEEEECCCCCE
Q ss_conf 8732112----011484699707875344799999999998568011--079997234210
Q gi|254780606|r 402 GESVIAD----LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDE--CRMIMVDPKMLE 456 (744)
Q Consensus 402 g~~~~~d----l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~--~~~~liD~k~~~ 456 (744)
+.+++-| +.+.-++.|.|.+|||||++++. |+.| +.|+. +.+--+|.+...
T Consensus 15 ~~~vL~~isl~i~~G~~iaIvG~sGsGKSTLl~l-l~gl---~~p~~G~I~idg~~i~~~~ 71 (238)
T cd03249 15 DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSL-LERF---YDPTSGEILLDGVDIRDLN 71 (238)
T ss_pred CCEEECCEEEEECCCCEEEEECCCCCCHHHHHHH-HHHC---CCCCCCEEEECCEECCCCC
T ss_conf 9952225589976999999999999989999999-8238---6188518999999923189
No 173
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=95.51 E-value=0.015 Score=36.58 Aligned_cols=209 Identities=20% Similarity=0.243 Sum_probs=96.9
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEE---------------------------
Q ss_conf 21120114846997078753447999999999985680110799972342100---------------------------
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLEL--------------------------- 457 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~--------------------------- 457 (744)
+-+++.+.=.+.|.|.+|||||++++. |.+|+ .-+...+++...|.+...-
T Consensus 26 vsl~I~~GE~v~IiG~nGsGKSTL~k~-l~Gll-~P~~G~V~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~v 103 (304)
T PRK13651 26 VSTEINQGEFIAIIGQTGSGKTTFIEH-LNALL-LPDTGTIEWIYFDEKNKEKKKVVEDPVIKLKFRKKLKKIKEIRRRV 103 (304)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHH-HHCCC-CCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCE
T ss_conf 057985998999987999859999999-96699-9887169994245434554311343022134566666689877337
Q ss_pred C-CCCCCC-CEEEE-EEECHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCHHHHHH------------HHHHHHCCCCCCC
Q ss_conf 0-125775-20000-444417876899999986676999-999807786799999------------8864202677666
Q gi|254780606|r 458 S-VYDGIP-HLLTP-VVTNPKKAVMALKWAVREMEERYR-KMSHLSVRNIKSYNE------------RISTMYGEKPQGC 521 (744)
Q Consensus 458 ~-~~~~~p-h~~~~-v~~~~~~~~~~l~~~~~em~~r~~-~~~~~~~~~i~~~n~------------~~~~~~~~~~~~~ 521 (744)
. .|+..- +++.. |..|.......+.+-.+|+.+|-. .+...|.. ..|.. |++-...
T Consensus 104 G~vfQ~p~~ql~~~tV~e~i~fg~~~~g~~~~e~~~rv~~~l~~vgL~--~~~~~~~p~~LSGGqkqRVaIA~~------ 175 (304)
T PRK13651 104 GVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLP--EEFLQKSPFELSGGQKRRVALAGI------ 175 (304)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC--HHHHHCCCCCCCHHHHHHHHHHHH------
T ss_conf 999517854556505999999999984999999999999999986998--567518954289999999999998------
Q ss_pred CCCCCCCCEEEEEHHHHHH-HHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHH
Q ss_conf 5432338679998445687-675310358999999999642013589998516544441467885056305720368111
Q gi|254780606|r 522 GDDMRPMPYIVIIVDEMAD-LMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKID 600 (744)
Q Consensus 522 ~~~~~~~p~ivvviDE~a~-l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~d 600 (744)
+.--|. +++.||=.. |--....++.+.|.+|. .-|+-+|+.|..-+ .+ +.+-.||.+= .+
T Consensus 176 ---La~~P~-iLlLDEPTagLDp~~~~~i~~~l~~L~----~~G~TVI~vTHdm~--~v-----~~~adRvivl----~~ 236 (304)
T PRK13651 176 ---LAMEPD-FLVFDEPTAGLDPQGVKEILEIFDTLN----KKGKTIILVTHDLD--NV-----LEWTKRTIFF----KD 236 (304)
T ss_pred ---HHCCCC-EEEECCCCCCCCHHHHHHHHHHHHHHH----HCCCEEEEECCCHH--HH-----HHHCCEEEEE----EC
T ss_conf ---845999-999729866589899999999999999----77999999867899--99-----9979999999----89
Q ss_pred CCHHCCCCCHHHHCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
Q ss_conf 003267631688568984686468984389993438988999999999840887
Q gi|254780606|r 601 SRTILGEHGAEQLLGRGDMLYMSGGGRIQRVHGPLVSDIEIEKVVQHLKKQGCP 654 (744)
Q Consensus 601 sr~il~~~gae~l~g~gd~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 654 (744)
-++|.+.. .+.++.+-+.|.. ..+.-..+-++...++.+|-+
T Consensus 237 G~Iv~~G~-p~evf~~~~~l~~-----------~~l~~P~~~~l~~~L~~~g~~ 278 (304)
T PRK13651 237 GKIIKDGD-TYEILNDEKFLIE-----------NKMLPPKLLNFVNKLIKKGIP 278 (304)
T ss_pred CEEEEECC-HHHHHCCHHHHHH-----------CCCCCCHHHHHHHHHHHCCCC
T ss_conf 98999868-8998679889987-----------799998199999999976999
No 174
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=95.50 E-value=0.032 Score=34.18 Aligned_cols=190 Identities=18% Similarity=0.276 Sum_probs=93.2
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC-------C-C---CCEECCCCCCCCEEEEEEEC
Q ss_conf 21120114846997078753447999999999985680110799972-------3-4---21000125775200004444
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD-------P-K---MLELSVYDGIPHLLTPVVTN 473 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD-------~-k---~~~~~~~~~~ph~~~~v~~~ 473 (744)
+-+++.+.--+-+-|-+|+|||++|+. |.+|. .|+.=++++-+ | | +.-|-.|.-.||+- |..|
T Consensus 23 v~l~v~~Ge~~~llGpSG~GKtTlLr~-iaGl~---~p~~G~I~~~g~~v~~~~p~~R~ig~VfQ~~aLfPh~t--V~eN 96 (353)
T TIGR03265 23 ISLSVKKGEFVCLLGPSGCGKTTLLRI-IAGLE---RQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLT--VADN 96 (353)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCC--HHHH
T ss_conf 486998999999999995359999999-97699---99873999999999999952588599978885467892--9999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHH-HHHHH
Q ss_conf 1787689999998667699-9999807786799---------99988642026776665432338679998445-68767
Q gi|254780606|r 474 PKKAVMALKWAVREMEERY-RKMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDE-MADLM 542 (744)
Q Consensus 474 ~~~~~~~l~~~~~em~~r~-~~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE-~a~l~ 542 (744)
........++-..|..+|. +++...+..++.+ -.+|++-.+. +-.-|.++ ..|| |+.|-
T Consensus 97 iafgl~~~~~~~~e~~~rv~~~l~~~~l~~~~~r~p~~LSGGq~QRVAlARA---------L~~~P~vl-LlDEPlsaLD 166 (353)
T TIGR03265 97 IAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARA---------LATSPGLL-LLDEPLSALD 166 (353)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHH---------HHCCCCEE-EEECCCCCCC
T ss_conf 9889987699999999999999987699557656964689888799999999---------85499899-9908765359
Q ss_pred HHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEE----CCCHHHCCHHCCCCCH---HHHCC
Q ss_conf 5310358999999999642013589998516544441467885056305720----3681110032676316---88568
Q gi|254780606|r 543 MVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQ----VTSKIDSRTILGEHGA---EQLLG 615 (744)
Q Consensus 543 ~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~----v~~~~dsr~il~~~ga---e~l~g 615 (744)
. +--+.+...|.++-+..|+-.|+.|--.+ +++ .+.-||+.- +.....-+.|...+.- -.++|
T Consensus 167 ~---~lr~~l~~~l~~l~~~~~~T~i~VTHD~~-EA~------~laDri~Vm~~G~i~q~G~p~eiy~~P~~~fVA~FiG 236 (353)
T TIGR03265 167 A---RVREHLRTEIRQLQRRLGVTTIMVTHDQE-EAL------SMADRIVVMNHGVIEQVGTPQEIYRHPATPFVADFVG 236 (353)
T ss_pred H---HHHHHHHHHHHHHHHHHCCEEEEECCCHH-HHH------HHCCEEEEEECCEEEEEECHHHHHHCCCCHHHHHHCC
T ss_conf 9---99999999999999986998999998989-999------8699899998999999828899986899869997469
Q ss_pred CCCEE
Q ss_conf 98468
Q gi|254780606|r 616 RGDML 620 (744)
Q Consensus 616 ~gd~l 620 (744)
...+|
T Consensus 237 ~~N~l 241 (353)
T TIGR03265 237 EVNWL 241 (353)
T ss_pred CCEEE
T ss_conf 25378
No 175
>COG0433 HerA helicase [Replication, recombination, and repair]
Probab=95.49 E-value=0.025 Score=35.00 Aligned_cols=63 Identities=33% Similarity=0.531 Sum_probs=47.4
Q ss_pred EEEEEECCCC--CEEECCHHHC---CCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECC
Q ss_conf 8984205788--7321120114---84699707875344799999999998568011079997234210001
Q gi|254780606|r 393 ALCLGKTISG--ESVIADLANM---PHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSV 459 (744)
Q Consensus 393 ~~~~g~~~~g--~~~~~dl~~~---PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~ 459 (744)
.+.+|.-..+ -++..|+.+. -|++|.|+||+|||.++..++..+.-.. ...++++|+.+ +...
T Consensus 144 ~l~lg~l~~~~~~~~~~~~~~~~~~~h~~i~~~tgsgks~~~~~l~~~l~~~~---~~~~~~~d~~~-e~~~ 211 (520)
T COG0433 144 GLLLGALLDGGEVPVYLDLNKLVLARHIAILGSTGSGKSNLAKVLLEELLGKD---GATVVIFDPHG-EYDL 211 (520)
T ss_pred CEECCCCCCCCCEEEEECCCCCCHHHHHEEEEECCCCHHHHHHHHHHHHHCCC---CCEEEEECCCC-HHHH
T ss_conf 50120202677503663476320112322441026622899999999863347---87199978876-0666
No 176
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.057 Score=32.49 Aligned_cols=169 Identities=20% Similarity=0.308 Sum_probs=82.9
Q ss_pred CCCCEEEEEEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC--C-------------
Q ss_conf 6783689842057887321120114846997078753447999999999985680110799972--3-------------
Q gi|254780606|r 388 SKANLALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD--P------------- 452 (744)
Q Consensus 388 ~~~~l~~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD--~------------- 452 (744)
++..+.=-.|....=+-+-+++.+.--+-|-|.+|||||++|+ +|.+|+ .|+.=++++-+ .
T Consensus 26 ~~e~v~K~fG~~~aL~~vsl~i~~GE~~~ivG~SGsGKSTLLr-~i~GL~---~p~~G~I~~~G~~i~~~~~~~l~~~r~ 101 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLR-CINRLI---EPTSGKVLIDGQDIAAMSRKELRELRR 101 (269)
T ss_pred CHHHEEEECCCEEEECCCEEEECCCCEEEEECCCCCHHHHHHH-HHHCCC---CCCCEEEEECCEECCCCCHHHHHHHHC
T ss_conf 8788588509927977747588899999999899848999999-997599---999759999999999999899988525
Q ss_pred C--CCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHH-H--------HHHHHHHHCCCCCC
Q ss_conf 4--21000125775200004444178768999999866769-99999807786799-9--------99886420267766
Q gi|254780606|r 453 K--MLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEER-YRKMSHLSVRNIKS-Y--------NERISTMYGEKPQG 520 (744)
Q Consensus 453 k--~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r-~~~~~~~~~~~i~~-~--------n~~~~~~~~~~~~~ 520 (744)
+ +.-|-.|.-.||+- |..|.........+-..|..+| .+++...|..+... | .+|++-.+.
T Consensus 102 ~~igmVFQ~~aL~P~lt--V~eNV~~~L~~~~~~~~e~~~rv~e~L~~vgL~~~~~~~P~qLSGGq~QRVaIARA----- 174 (269)
T cd03294 102 KKISMVFQSFALLPHRT--VLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARA----- 174 (269)
T ss_pred CCEEEEEECCCCCCCCC--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHHCHHHHHHHHHHHH-----
T ss_conf 64699961575476787--99998688885289978999999999986798677756967849488889999999-----
Q ss_pred CCCCCCCCCEEEEEHHH-HHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 65432338679998445-68767531035899999999964201358999851654
Q gi|254780606|r 521 CGDDMRPMPYIVIIVDE-MADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 521 ~~~~~~~~p~ivvviDE-~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
+..-|.|+ +.|| ++.|--....++.. .|-++-+..|+-+|+-|-...
T Consensus 175 ----La~~P~iL-LlDEPtsaLD~~~~~~i~~---~l~~l~~~~~~T~i~VTHD~~ 222 (269)
T cd03294 175 ----LAVDPDIL-LMDEAFSALDPLIRREMQD---ELLRLQAELQKTIVFITHDLD 222 (269)
T ss_pred ----HHCCCCEE-EECCCCCCCCHHHHHHHHH---HHHHHHHHHCCEEEEECCCHH
T ss_conf ----86399899-9758754259999999999---999999974999999999899
No 177
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.48 E-value=0.055 Score=32.60 Aligned_cols=281 Identities=22% Similarity=0.267 Sum_probs=117.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCCCCEEEHHHHHCCHHHCCCCCCEEEEEEECCCCCEEE
Q ss_conf 88863999985999999871477632775189834544268888870765875128121146783689842057887321
Q gi|254780606|r 327 APGIKSSRVIGLADDIARSMSSLSARVAVIPKRNAIGIELPNETRETVYLRQIIESRSFSHSKANLALCLGKTISGESVI 406 (744)
Q Consensus 327 ~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~pg~~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~l~~~~g~~~~g~~~~ 406 (744)
+.|++...--.++-++-..|...++++ |.-.+|.+ ..+ ..|-=-.|.++..+...
T Consensus 198 aaG~~P~~Ay~iA~eie~~L~~~~~~~--------------------i~~~elr~-~v~----~~L~~~~~~~~A~rY~l 252 (492)
T PRK12337 198 AAGVAPDVARKVARVTQRDLRGSGDRV--------------------VRRDEIRE-KVE----ALLRDEVGPDVSARYRL 252 (492)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCEE--------------------EEHHHHHH-HHH----HHHHHHCCHHHHHHHHH
T ss_conf 805888899999999999998658879--------------------70999999-999----99987303889999999
Q ss_pred CCHH---HCC-CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHH
Q ss_conf 1201---148-469970787534479999999999856801107999723421000125775200004444178768999
Q gi|254780606|r 407 ADLA---NMP-HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALK 482 (744)
Q Consensus 407 ~dl~---~~P-H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~ 482 (744)
|-.- +-| |+||+|+||-|||+ |-..|+++. +|.++.+ ||
T Consensus 253 wR~ir~~~~PiiILIGGaSGvGKST----lAseLA~RL---------------------GI~~VIs---TD--------- 295 (492)
T PRK12337 253 LRVLRKPPRPLHVLLGGVSGTGKSV----LAAELAYRL---------------------GITRVVP---TD--------- 295 (492)
T ss_pred HHHHHCCCCCEEEEEECCCCCCHHH----HHHHHHHHH---------------------CCCCCCC---CH---------
T ss_conf 9997356887699960788866888----999999960---------------------9881025---44---------
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf 99986676999999807786799999886420267766654323386799984456876753103589999999996420
Q gi|254780606|r 483 WAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARA 562 (744)
Q Consensus 483 ~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra 562 (744)
.++||-|.+---...=.=.-..|++--.- ...+.+. +.-|.---++.=|-+-...+..-++..+.|-.+.|.+
T Consensus 296 -sIREVMR~~is~el~P~Lh~SSy~Awk~L----~~~~~~~--~~~~~~~~vi~GF~~Qv~~V~vGl~aVieRa~~EG~S 368 (492)
T PRK12337 296 -AIREVMRAMVSKDLLPTLHASTFNAWEAL----VPPGLGL--PGEPTRVELLAGFRDQVQQVSVGLKAVVRRSILEGTS 368 (492)
T ss_pred -HHHHHHHHHCCHHHCCHHHHHHHHHHHHC----CCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf -79999998459764845777556888860----8734577--7786076899899999999999999999999972886
Q ss_pred C---EEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCC-CHHHHC--CCCCEEEECCCCCEEEEEECCC
Q ss_conf 1---358999851654444146788505630572036811100326763-168856--8984686468984389993438
Q gi|254780606|r 563 A---GIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEH-GAEQLL--GRGDMLYMSGGGRIQRVHGPLV 636 (744)
Q Consensus 563 ~---GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~-gae~l~--g~gd~l~~~~~~~~~r~~~~~~ 636 (744)
+ |+||+. +.|.+.. ..-++=|-|-|.-. |+. --+.+. +++ |- .-|--+.|+
T Consensus 369 vVIEGVHLvP-------g~i~~~~-~e~~~vIp~mV~i~-------dEe~Hr~RF~~R~r~-t~-------~~Rp~ekYL 425 (492)
T PRK12337 369 LVLEGVHLVP-------GYLQHAY-QDGALTVPMLVALP-------DEEEHRRHFELRDRE-TA-------ASRPLHRYM 425 (492)
T ss_pred EEEEEEEECH-------HHHHHHH-CCCCEEEEEEEEEC-------CHHHHHHHHHHHHHH-HC-------CCCCHHHHH
T ss_conf 7998333070-------6666664-15873899999847-------679999999987514-10-------368601799
Q ss_pred C-HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHH
Q ss_conf 9-889999999998408875311112455554444566777777766038999999997498623220000010078999
Q gi|254780606|r 637 S-DIEIEKVVQHLKKQGCPEYLNTVTTDTDTDKDGNNFDSEEKKERSNLYAKAVDLVIDNQRCSTSFIQRRLQIGYNRAA 715 (744)
Q Consensus 637 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~qr~~~~g~~ra~ 715 (744)
. =++|..|-+|+....+-.-+. + -+.++.|+-.++|+++|++.=.+ -|- --.|.+
T Consensus 426 k~F~eIR~IQdyLv~rAre~gVP-V---------------I~n~~ldesvd~~~evi~~r~~~-------a~~-~e~~~~ 481 (492)
T PRK12337 426 RHFEEIRLMQDHLLRLAREEDVP-V---------------LDGETLDESADKAVEVVLRYVMV-------ALT-PEERGQ 481 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCC-C---------------CCCCCHHHHHHHHHHHHHHHHHH-------HCC-HHHHHH
T ss_conf 97999999999999999874998-2---------------07876677999999999999998-------459-899998
Q ss_pred HHHHHHHH
Q ss_conf 99999998
Q gi|254780606|r 716 LLVERMEQ 723 (744)
Q Consensus 716 ~~~~~~e~ 723 (744)
+|=|.++.
T Consensus 482 ~l~~~~~~ 489 (492)
T PRK12337 482 RLGEAHAA 489 (492)
T ss_pred HHHHHHHH
T ss_conf 87677776
No 178
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.47 E-value=0.079 Score=31.54 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=28.1
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE
Q ss_conf 211201148469970787534479999999999856801107999
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM 449 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l 449 (744)
+-+++.+.=.+-|.|..|||||++|+. |.+|+ .|+.=++.+
T Consensus 29 isl~i~~GE~v~ivG~sGsGKSTLl~~-i~Gl~---~p~~G~I~~ 69 (228)
T PRK10584 29 VELVVKRGETIALIGESGSGKSTLLAI-LAGLD---DGSSGEVSL 69 (228)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCEEEEE
T ss_conf 388999998999999998589999999-96699---999679999
No 179
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=95.46 E-value=0.14 Score=29.85 Aligned_cols=159 Identities=14% Similarity=0.256 Sum_probs=72.8
Q ss_pred CEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEE--CCC-CCE-----------EC-CCCCCCCEE
Q ss_conf 732112011484699707875344799999999998568011079997--234-210-----------00-125775200
Q gi|254780606|r 403 ESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMV--DPK-MLE-----------LS-VYDGIPHLL 467 (744)
Q Consensus 403 ~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~li--D~k-~~~-----------~~-~~~~~ph~~ 467 (744)
+-+-+++.+.=.+-|-|.-|||||++|++ |.+|+...++..-++.+. +.. ... .. .|+. ..++
T Consensus 21 ~~isl~i~~GE~~~iiGpNGaGKSTLlk~-i~Gll~~d~~~~g~i~~~g~~i~~~~~~~~~~~~~r~~ig~v~Q~-~~l~ 98 (262)
T PRK09984 21 HAVDLNIHHGEMVALLGPSGSGKSTLLRH-LSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQ-FNLV 98 (262)
T ss_pred CCEEEEECCCCEEEEECCCCCHHHHHHHH-HHCCCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCEEEECCC-CCCC
T ss_conf 45278987998999998999609999999-975677798984179988998665763355789864576997478-7679
Q ss_pred E--EEEECHHH--------HHHHHHHHHHHHHHH-HHHHHHCCCCCHH---------HHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 0--04444178--------768999999866769-9999980778679---------99998864202677666543233
Q gi|254780606|r 468 T--PVVTNPKK--------AVMALKWAVREMEER-YRKMSHLSVRNIK---------SYNERISTMYGEKPQGCGDDMRP 527 (744)
Q Consensus 468 ~--~v~~~~~~--------~~~~l~~~~~em~~r-~~~~~~~~~~~i~---------~~n~~~~~~~~~~~~~~~~~~~~ 527 (744)
. .|..+..- ....+.|...+...| .+.+...|..+.. +-.+|+.-.+.- -.
T Consensus 99 ~~~tV~env~~g~l~~~~~~~~~~~~~~~~~~~~~~~~L~~vgl~~~~~~~~~~LSGGqkQRv~IArAL---------~~ 169 (262)
T PRK09984 99 NRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARAL---------MQ 169 (262)
T ss_pred CCCCHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH---------HC
T ss_conf 988799998546512673033330437599999999999877996565098534899999999999999---------71
Q ss_pred CCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 867999844568767531035899999999964201358999851654
Q gi|254780606|r 528 MPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 528 ~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
-|. |++.||=..=+ .....+..+..|.++.+..|+-+|+.|...+
T Consensus 170 ~P~-iLllDEPta~L--Dp~~~~~i~~~l~~l~~~~g~Til~vtHdl~ 214 (262)
T PRK09984 170 QAK-VILADEPIASL--DPESARIVMDTLRDINQNDGITVVVTLHQVD 214 (262)
T ss_pred CCC-EEEECCCCCCC--CHHHHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 999-99983886779--9999999999999999854979999888989
No 180
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.46 E-value=0.017 Score=36.08 Aligned_cols=212 Identities=18% Similarity=0.207 Sum_probs=102.0
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEEC--------CCCCCCCEEEEEEECHHH
Q ss_conf 211201148469970787534479999999999856801107999723421000--------125775200004444178
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELS--------VYDGIPHLLTPVVTNPKK 476 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~--------~~~~~ph~~~~v~~~~~~ 476 (744)
+-+++.+.-.+.|.|.+|||||++++. |.+|+ .-..-++.+.-.|.+..... .|++--+.+. -.|=.+.
T Consensus 26 isl~i~~GE~vaivG~nGsGKSTL~k~-l~Gl~-~p~~G~I~i~G~~i~~~~~~~lr~~ig~VfQ~P~~~l~-~~tV~e~ 102 (279)
T PRK13635 26 VSFSVYEGEWVAIVGHNGSGKSTLAKL-LNGLL-LPEAGTITVGGMVLSEETVWDVRKQIGMVFQNPDNQFV-GTTVQDD 102 (279)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC-CCCCCEEEECCEECCCCCHHHHHHHEEEEECCHHHHCC-CCHHHHH
T ss_conf 076887998999999999659999999-97288-88896499999999857879997436688218565257-6268999
Q ss_pred HHHHHH---HHHHHHHHHHH-HHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHH
Q ss_conf 768999---99986676999-999807786799---------99988642026776665432338679998445687675
Q gi|254780606|r 477 AVMALK---WAVREMEERYR-KMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMM 543 (744)
Q Consensus 477 ~~~~l~---~~~~em~~r~~-~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~ 543 (744)
.+..+. .-..++.+|.. .+...|..++.+ -.+|++-.+. +-.-|.| ++.||=---+.
T Consensus 103 iafgl~~~g~~~~e~~~rv~~~l~~~gl~~~~~~~p~~LSGGQrQRvaIAra---------L~~~P~i-LilDEPTs~LD 172 (279)
T PRK13635 103 VAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGV---------LALQPDI-LILDEATSMLD 172 (279)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHH---------HHCCCCE-EEECCCCCCCC
T ss_conf 9889987799999999999999987799788617934399999999999999---------9709998-99738745489
Q ss_pred HCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCCCCEEEEC
Q ss_conf 31035899999999964201358999851654444146788505630572036811100326763168856898468646
Q gi|254780606|r 544 VAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDMLYMS 623 (744)
Q Consensus 544 ~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~gd~l~~~ 623 (744)
..-....+..|-++.+..|+-+|+.|.+.+ . +. + .-||.+== +-+ |+-++-.+.|+...+.|...
T Consensus 173 --~~~~~~i~~~l~~L~~~~g~TvI~itHdl~--~----~~-~-aDRiivm~----~G~-Iv~~Gtp~elf~~~~~l~~~ 237 (279)
T PRK13635 173 --PQGRREVLETVRQLKEQKGITVLSITHDLD--E----AA-Q-ADRVIVMN----KGE-ILEEGTPEEIFKSGHMLQEI 237 (279)
T ss_pred --HHHHHHHHHHHHHHHHCCCCEEEEEEECHH--H----HH-C-CCEEEEEE----CCE-EEEECCHHHHHCCHHHHHHC
T ss_conf --899999999999999837989999976789--9----96-3-99899998----999-99986999997798899977
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 89843899934389889999999998408875
Q gi|254780606|r 624 GGGRIQRVHGPLVSDIEIEKVVQHLKKQGCPE 655 (744)
Q Consensus 624 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (744)
+ +.-..+-++.+.++.+|-..
T Consensus 238 ~-----------l~~P~~~~l~~~l~~~g~~~ 258 (279)
T PRK13635 238 G-----------LDVPFSVKLKELLKRNGILL 258 (279)
T ss_pred C-----------CCCCHHHHHHHHHHHCCCCC
T ss_conf 9-----------99994999999999759999
No 181
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.45 E-value=0.017 Score=36.03 Aligned_cols=208 Identities=23% Similarity=0.356 Sum_probs=95.9
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE--ECC--CCCEEC--------CCCCCC--CEEEE-
Q ss_conf 211201148469970787534479999999999856801107999--723--421000--------125775--20000-
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM--VDP--KMLELS--------VYDGIP--HLLTP- 469 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l--iD~--k~~~~~--------~~~~~p--h~~~~- 469 (744)
+-+++.+.=.+.|-|..|||||++++. |.+|+ .|+.=++++ .|. +...+. .|++ | .++..
T Consensus 26 isl~i~~GE~v~iiG~nGsGKSTLl~~-l~GLl---~p~~G~V~i~G~~i~~~~~~~~~~r~~iG~VfQ~-P~~~l~~~t 100 (287)
T PRK13637 26 VNIEIEDGEFVALIGHTGSGKSTLIQH-LNGLL---KPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQY-PEYQLFEET 100 (287)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCCEEEECCEECCCCCCCHHHHHHCEEEEEEC-CCCCCCCCC
T ss_conf 076987998999999999399999999-97399---8887269999999878886778887417899617-520237030
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCHHHHH------------HHHHHHHCCCCCCCCCCCCCCCEEEEEHH
Q ss_conf 4444178768999999866769999-9980778679999------------98864202677666543233867999844
Q gi|254780606|r 470 VVTNPKKAVMALKWAVREMEERYRK-MSHLSVRNIKSYN------------ERISTMYGEKPQGCGDDMRPMPYIVIIVD 536 (744)
Q Consensus 470 v~~~~~~~~~~l~~~~~em~~r~~~-~~~~~~~~i~~~n------------~~~~~~~~~~~~~~~~~~~~~p~ivvviD 536 (744)
|..+.......+.+-..++.+|... +...|.. ...|. +|++-... +.--|. +++.|
T Consensus 101 V~e~i~fg~~~~g~~~~e~~~rv~~~l~~vgL~-~~~~~~~~p~~LSGGqkQRvaiA~a---------L~~~P~-iLllD 169 (287)
T PRK13637 101 IEKDIAFGPINLGLSEEEIENRVKEAMNIVGLD-YEVYKDKSPFELSGGQKRRVAIAGV---------VAMEPK-VLILD 169 (287)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC-HHHHHCCCHHHCCHHHHHHHHHHHH---------HHCCCC-EEEEE
T ss_conf 999998689886999999999999999766998-4887068911299889999999999---------983999-99983
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCC
Q ss_conf 56876753103589999999996420135899985165444414678850563057203681110032676316885689
Q gi|254780606|r 537 EMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGR 616 (744)
Q Consensus 537 E~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~ 616 (744)
|=..-+ ........+..|.++-+..|+-+|++|...+ . + +.+--||.+=- +-++|.+.. .+.++.+
T Consensus 170 EPTs~L--Dp~~~~~i~~~l~~L~~e~g~Tvi~vTHdl~-~-----v-~~~aDRvivl~----~G~Iv~~Gt-p~evf~~ 235 (287)
T PRK13637 170 EPTAGL--DPKGRDDILEKIKALHKEYNMTIILVSHSME-D-----V-AKIADRIIVMN----KGRCELQGT-PREVFKE 235 (287)
T ss_pred CCCCCC--CHHHHHHHHHHHHHHHHHCCCEEEEECCCHH-H-----H-HHHCCEEEEEE----CCEEEEECC-HHHHHCC
T ss_conf 886648--9999999999999999850989999957999-9-----9-99699999998----999999878-8998769
Q ss_pred CCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCC
Q ss_conf 8468646898438999343898899999999984088
Q gi|254780606|r 617 GDMLYMSGGGRIQRVHGPLVSDIEIEKVVQHLKKQGC 653 (744)
Q Consensus 617 gd~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 653 (744)
-+.|.. +-+.-..+-++...++++|-
T Consensus 236 ~~~l~~-----------~~l~~P~~~~l~~~L~~~g~ 261 (287)
T PRK13637 236 VDTLES-----------IGLAVPQVTYLVRKLRKKGF 261 (287)
T ss_pred HHHHHH-----------CCCCCCHHHHHHHHHHHCCC
T ss_conf 889987-----------69999919999999997599
No 182
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.45 E-value=0.085 Score=31.30 Aligned_cols=152 Identities=24% Similarity=0.360 Sum_probs=73.3
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEE--CCCC---CEE--------CCCCCCCCEEEEEE
Q ss_conf 2112011484699707875344799999999998568011079997--2342---100--------01257752000044
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMV--DPKM---LEL--------SVYDGIPHLLTPVV 471 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~li--D~k~---~~~--------~~~~~~ph~~~~v~ 471 (744)
+-+++.+.--+-|-|..|||||++|++ |.+|+ .|+.=++++- |... .++ ..|++ +.|+ +-.
T Consensus 19 isl~i~~Ge~~~iiG~SGsGKSTll~~-i~gL~---~p~~G~I~~~g~~i~~~~~~~~~~~r~~ig~vfQ~-~~Lf-~~l 92 (235)
T cd03261 19 VDLDVRRGEILAIIGPSGSGKSTLLRL-IVGLL---RPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQS-GALF-DSL 92 (235)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCCEEEECCEECCCCCHHHHHHHHCCEEEEECC-CCCC-CCC
T ss_conf 064887998999999999729999999-97599---98985899999999989988999975782997049-8658-999
Q ss_pred ECHHHHHHHHH----HHHHHHHHH-HHHHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHH
Q ss_conf 44178768999----999866769-99999807786799---------99988642026776665432338679998445
Q gi|254780606|r 472 TNPKKAVMALK----WAVREMEER-YRKMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDE 537 (744)
Q Consensus 472 ~~~~~~~~~l~----~~~~em~~r-~~~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE 537 (744)
|-.+.....|+ +-..++++| ..++...|..+... -.+|++-.+.-. .-|.| ++.||
T Consensus 93 Tv~eNv~~~l~~~~~~~~~~~~~r~~~~L~~vgL~~~~~~~p~~LSGGq~QRvaIARALv---------~~P~i-lllDE 162 (235)
T cd03261 93 TVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALA---------LDPEL-LLYDE 162 (235)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHH---------CCCCE-EEEEC
T ss_conf 699999999999579999999999999998679925764784106999999999999985---------48998-99808
Q ss_pred -HHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf -68767531035899999999964201358999851654
Q gi|254780606|r 538 -MADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 538 -~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
++.|--....++...| -.+-+..|+-+|+.|-..+
T Consensus 163 Pts~LDp~~~~~i~~li---~~l~~~~g~T~i~vTHd~~ 198 (235)
T cd03261 163 PTAGLDPIASGVIDDLI---RSLKKELGLTSIMVTHDLD 198 (235)
T ss_pred CCCCCCHHHHHHHHHHH---HHHHHHHCCEEEEECCCHH
T ss_conf 86647989999999999---9999972999999898989
No 183
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.45 E-value=0.026 Score=34.87 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=34.4
Q ss_pred EEECCCCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCC
Q ss_conf 42057887321120----1148469970787534479999999999856801107999723421
Q gi|254780606|r 396 LGKTISGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKML 455 (744)
Q Consensus 396 ~g~~~~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~ 455 (744)
...+-...+++-|+ .+.-.+.|.|.+|||||++++. |++| |...--++.+--+|.+..
T Consensus 10 f~Y~~~~~~~L~~isl~i~~G~~v~ivG~sGsGKSTLl~l-l~gl-~~p~~G~I~i~g~~~~~~ 71 (220)
T cd03245 10 FSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKL-LAGL-YKPTSGSVLLDGTDIRQL 71 (220)
T ss_pred EEECCCCCCCEECEEEEECCCCEEEEECCCCCHHHHHHHH-HHCC-CCCCCCEEEECCEEHHHH
T ss_conf 9969899851534599987999999999999859999999-9672-547865899999995772
No 184
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.44 E-value=0.22 Score=28.52 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=31.5
Q ss_pred EEEEEEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEE
Q ss_conf 689842057887321120114846997078753447999999999985680110799
Q gi|254780606|r 392 LALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMI 448 (744)
Q Consensus 392 l~~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~ 448 (744)
|..-.|....=+-+-+++.+.=.+-+.|..|||||++++. |+++ ..|+.=++.
T Consensus 11 ls~~yg~~~~L~~isl~i~~Gei~~liG~NGaGKSTLl~~-i~G~---~~~~~G~I~ 63 (237)
T PRK11614 11 VSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGT-LCGD---PRATSGRIV 63 (237)
T ss_pred EEEEECCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHH-HHCC---CCCCCEEEE
T ss_conf 8999899888811278986997999987999759999999-9679---988962899
No 185
>KOG1514 consensus
Probab=95.41 E-value=0.12 Score=30.29 Aligned_cols=158 Identities=15% Similarity=0.223 Sum_probs=73.1
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHH-HHHHHHHH
Q ss_conf 46997078753447999999999985680110799972342100012577520000444417876899999-98667699
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWA-VREMEERY 492 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~-~~em~~r~ 492 (744)
-+-|.|+.|+||+-.++.+|-.|..-..-.++ ..|.. -|+-+-..+.+..+-..+... ..+-..+.
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~------------p~f~y-veINgm~l~~~~~~Y~~I~~~lsg~~~~~~ 490 (767)
T KOG1514 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKEL------------PKFDY-VEINGLRLASPREIYEKIWEALSGERVTWD 490 (767)
T ss_pred EEEEECCCCCCCEEHHHHHHHHHHHHHHHCCC------------CCCCE-EEECCEEECCHHHHHHHHHHHCCCCCCCHH
T ss_conf 79984699988321299999999987750578------------98607-987144615889999999997555743077
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEEC
Q ss_conf 99998077867999998864202677666543233867999844568767531035899999999964201358999851
Q gi|254780606|r 493 RKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQ 572 (744)
Q Consensus 493 ~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQ 572 (744)
.- +...|.++.. +-++-+-+||.|||+- ++.+..++|--.|-.+--+--|- |++-+=
T Consensus 491 ~a--------l~~L~~~f~~-----------~k~~~~~~VvLiDElD-~Lvtr~QdVlYn~fdWpt~~~sK---Lvvi~I 547 (767)
T KOG1514 491 AA--------LEALNFRFTV-----------PKPKRSTTVVLIDELD-ILVTRSQDVLYNIFDWPTLKNSK---LVVIAI 547 (767)
T ss_pred HH--------HHHHHHHHCC-----------CCCCCCCEEEEECCHH-HHHCCCHHHHHHHHCCCCCCCCC---EEEEEE
T ss_conf 88--------9999865416-----------7878787799963578-77352098897774077678986---699995
Q ss_pred CCCCCCCHHHHHHCCC-----CEEEEECCCHHHCCHHCCC
Q ss_conf 6544441467885056-----3057203681110032676
Q gi|254780606|r 573 RPSVDVITGTIKANFP-----IRISFQVTSKIDSRTILGE 607 (744)
Q Consensus 573 rp~~~vi~~~ik~n~~-----~ri~~~v~~~~dsr~il~~ 607 (744)
-=+.|..-.+|-.-+. +||+|.--+...=+.|++.
T Consensus 548 aNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~ 587 (767)
T KOG1514 548 ANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISA 587 (767)
T ss_pred CCCCCCHHHHHCCCHHHHCCCEEEECCCCCHHHHHHHHHH
T ss_conf 1656477988543112330650551377889999999998
No 186
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.41 E-value=0.12 Score=30.27 Aligned_cols=208 Identities=18% Similarity=0.247 Sum_probs=96.3
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECC------CCCEEC--------CCCCCC--CEEE
Q ss_conf 211201148469970787534479999999999856801107999723------421000--------125775--2000
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDP------KMLELS--------VYDGIP--HLLT 468 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~------k~~~~~--------~~~~~p--h~~~ 468 (744)
+-+++.+.-.+-|-|.+|||||++++. |.+|+ .|+.=++.+-|- +..++. .|+ .| +++.
T Consensus 25 Isl~I~~Ge~vaiiG~nGsGKSTLl~~-l~Gll---~p~~G~V~~~~~~i~~~~~~~~~~~~~~~vG~VfQ-~p~~ql~~ 99 (288)
T PRK13643 25 IDLEVKKGSYTALIGHTGSGKSTLLQH-LNGLL---QPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQ-FPESQLFE 99 (288)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCCEEEECCEECCCCCHHHHHHHHHHCEEEEEE-CCCCCCCH
T ss_conf 367985998999999999479999999-97488---88885699999985687735447987751799997-77320243
Q ss_pred EEEECHHHHHHHHHH---HHHHHHHHHH-HHHHCCCCC-HHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEE
Q ss_conf 044441787689999---9986676999-999807786-799---------99988642026776665432338679998
Q gi|254780606|r 469 PVVTNPKKAVMALKW---AVREMEERYR-KMSHLSVRN-IKS---------YNERISTMYGEKPQGCGDDMRPMPYIVII 534 (744)
Q Consensus 469 ~v~~~~~~~~~~l~~---~~~em~~r~~-~~~~~~~~~-i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvv 534 (744)
. |-.+..+..++. -..++++|.. .+...|..+ +.+ -.+|++-... +.--|. |++
T Consensus 100 ~--tV~e~vafg~~n~g~~~~e~~~~v~~~l~~vgl~d~~~~r~p~~LSGGqkqRvaiA~a---------La~~P~-vLl 167 (288)
T PRK13643 100 E--TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGI---------LAMEPE-VLV 167 (288)
T ss_pred H--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHH---------HHCCCC-EEE
T ss_conf 3--6999999899986999899999999999975993667527976399999999999999---------974999-999
Q ss_pred HHHHHH-HHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHH
Q ss_conf 445687-6753103589999999996420135899985165444414678850563057203681110032676316885
Q gi|254780606|r 535 VDEMAD-LMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQL 613 (744)
Q Consensus 535 iDE~a~-l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l 613 (744)
.||=.. |--....++...|.+|. ..|+-+|+.|...+ .+ +.+-.||.+= .+-++|.+..-.| +
T Consensus 168 LDEPTs~LDp~~~~~i~~ll~~l~----~~G~TiI~vtHd~~--~v-----~~~adrvivl----~~G~Iv~~Gtp~e-v 231 (288)
T PRK13643 168 LDEPTAGLDPKARIEMMQLFESIH----QSGQTVVLVTHLMD--DV-----ADYADYVYLL----EKGHIISCGTPSD-V 231 (288)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHH----HCCCEEEEECCCHH--HH-----HHHCCEEEEE----ECCEEEEECCHHH-H
T ss_conf 958855589999999999999999----53999999860899--99-----9979999999----8999999878899-8
Q ss_pred CCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 6898468646898438999343898899999999984088753
Q gi|254780606|r 614 LGRGDMLYMSGGGRIQRVHGPLVSDIEIEKVVQHLKKQGCPEY 656 (744)
Q Consensus 614 ~g~gd~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (744)
+.+-+.| +.+++.-..+-++...++..|...+
T Consensus 232 f~~~~~l-----------~~~~l~~P~~~~l~~~L~~~g~~~~ 263 (288)
T PRK13643 232 FQEVDFL-----------KAHELGVPKATHFADQLQKTGAVTF 263 (288)
T ss_pred HCCHHHH-----------HHCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 6699999-----------9769999849999999997699886
No 187
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.33 E-value=0.18 Score=29.05 Aligned_cols=41 Identities=15% Similarity=0.294 Sum_probs=27.1
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEE
Q ss_conf 2112011484699707875344799999999998568011079
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRM 447 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~ 447 (744)
|-+++.+.--+-|.|-.|||||++++. |++++ +...-++.|
T Consensus 24 vs~~v~~Gei~~liGpnGaGKSTL~~~-i~Gl~-~p~~G~I~~ 64 (255)
T PRK11300 24 VNLEVREQEVVSLIGPNGAGKTTVFNC-LTGFY-KPTGGTILL 64 (255)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHH-HHCCC-CCCCEEEEE
T ss_conf 088989997999998999649999999-96798-898608999
No 188
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=95.33 E-value=0.011 Score=37.28 Aligned_cols=20 Identities=45% Similarity=0.687 Sum_probs=18.4
Q ss_pred CEEEEECCCCCHHHHHHHHH
Q ss_conf 46997078753447999999
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMI 433 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i 433 (744)
|+.|+|.+|||||.|||++-
T Consensus 3 ~iaVtGesGaGKSSfINAlR 22 (197)
T cd04104 3 NIAVTGESGAGKSSFINALR 22 (197)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 79995589986899999986
No 189
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.31 E-value=0.068 Score=31.99 Aligned_cols=40 Identities=20% Similarity=0.446 Sum_probs=27.0
Q ss_pred ECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE
Q ss_conf 11201148469970787534479999999999856801107999
Q gi|254780606|r 406 IADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM 449 (744)
Q Consensus 406 ~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l 449 (744)
-+++.+.-.+.|.|.+|||||++++. |++++ .|+.=++.+
T Consensus 22 sl~i~~Ge~i~ivG~sGsGKSTLl~l-l~gl~---~p~~G~I~i 61 (171)
T cd03228 22 SLTIKPGEKVAIVGPSGSGKSTLLKL-LLRLY---DPTSGEILI 61 (171)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCCEEEE
T ss_conf 89985998999999999839999999-97677---589748999
No 190
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=95.30 E-value=0.013 Score=36.86 Aligned_cols=153 Identities=22% Similarity=0.338 Sum_probs=70.1
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCC---E--------EC-CCCCCCCEEEEEEE
Q ss_conf 211201148469970787534479999999999856801107999723421---0--------00-12577520000444
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKML---E--------LS-VYDGIPHLLTPVVT 472 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~---~--------~~-~~~~~ph~~~~v~~ 472 (744)
+-+++.+.-.+.|.|..|||||+++| +|.+| ++-.-.++.+--.|.+.. + +. .|+. +|++. -.|
T Consensus 27 vsl~i~~Ge~v~i~G~nGsGKSTll~-~l~gl-~~p~~G~v~~~G~~~~~~~~~~~~~~rr~~ig~v~Q~-~~l~~-~~t 102 (648)
T PRK10535 27 ISLTIYAGEMVAIVGASGSGKSTLMN-ILGCL-DKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQR-YHLLS-HLT 102 (648)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHH-HHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHCCCEEEECCC-CCCCC-CCC
T ss_conf 69999899899999999962999999-99569-9999669999999988599899999865868998679-74379-995
Q ss_pred CHHHHHHHHHH---HHHHHHHH-HHHHHHCCCCCHHHH---------HHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHH
Q ss_conf 41787689999---99866769-999998077867999---------998864202677666543233867999844568
Q gi|254780606|r 473 NPKKAVMALKW---AVREMEER-YRKMSHLSVRNIKSY---------NERISTMYGEKPQGCGDDMRPMPYIVIIVDEMA 539 (744)
Q Consensus 473 ~~~~~~~~l~~---~~~em~~r-~~~~~~~~~~~i~~~---------n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a 539 (744)
-.+.....+.+ -..++.+| .+++...|..+..+. .+|+.-.+. +-.-|. +++.||=.
T Consensus 103 v~env~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~p~~LSgGq~QRvaiAra---------l~~~p~-vlllDEPT 172 (648)
T PRK10535 103 AAQNVEVPAVYAGLERKQRLERAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARA---------LMNGGQ-VILADEPT 172 (648)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHH---------HHHCCC-EEEECCCC
T ss_conf 99999989987799989999999999997799667557823389999999999999---------972898-99956885
Q ss_pred -HHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf -767531035899999999964201358999851654
Q gi|254780606|r 540 -DLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 540 -~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
.|-....+++-+.|.+|. .-|.-+|+.|-.+.
T Consensus 173 ~~LD~~~~~~v~~ll~~l~----~~G~tii~vtHd~~ 205 (648)
T PRK10535 173 GALDSHSGEEVMAILHQLR----DRGHTVIIVTHDPQ 205 (648)
T ss_pred CCCCHHHHHHHHHHHHHHH----HCCCEEEEECCCHH
T ss_conf 5579999999999999999----77999999764869
No 191
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.30 E-value=0.13 Score=30.02 Aligned_cols=156 Identities=17% Similarity=0.295 Sum_probs=71.2
Q ss_pred CCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCC-----EE-CCCCCCCCEEE--
Q ss_conf 887321120----1148469970787534479999999999856801107999723421-----00-01257752000--
Q gi|254780606|r 401 SGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKML-----EL-SVYDGIPHLLT-- 468 (744)
Q Consensus 401 ~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~-----~~-~~~~~~ph~~~-- 468 (744)
.|++++-|+ .+.--+.|.|-.|+|||++|+ +|.+|+ .|+.=++. +|-+.+ +. ..|++ +.++.
T Consensus 12 g~~~~L~dvsl~i~~Ge~~~lvGpnGaGKSTLl~-~i~Gl~---~p~~G~I~-~~G~~i~~~~~~~g~vfQ~-~~l~p~~ 85 (255)
T PRK11248 12 GGKPALEDINLTLESGELLVVLGPSGCGKTTLLN-LIAGFV---PPQHGSIT-LDGKPVEGPGAERGVVFQN-EGLLPWR 85 (255)
T ss_pred CCEEEEECEEEEECCCCEEEEECCCCCHHHHHHH-HHHCCC---CCCCCEEE-ECCCCCCCCCHHCEEEECC-CCCCCCC
T ss_conf 9998881317798699899999999846999999-997599---88997185-7996478862110699455-7547568
Q ss_pred EEEECHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHH
Q ss_conf 044441787689999998667699-9999807786799---------999886420267766654323386799984456
Q gi|254780606|r 469 PVVTNPKKAVMALKWAVREMEERY-RKMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDEM 538 (744)
Q Consensus 469 ~v~~~~~~~~~~l~~~~~em~~r~-~~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~ 538 (744)
.|..+..........-..+++.+. +++...|..+... -.+|+.-.+.- -.-|.| ++.||=
T Consensus 86 tv~env~~~l~~~g~~~~~~~~~~~~~L~~vgL~~~~~~~p~~LSGGqkQRVaiArAL---------~~~P~i-LllDEP 155 (255)
T PRK11248 86 NVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARAL---------AANPQL-LLLDEP 155 (255)
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHH---------HCCCCE-EEEECC
T ss_conf 7999999899874898789999999999976990244189334999999999999999---------729999-998088
Q ss_pred -HHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf -8767531035899999999964201358999851654
Q gi|254780606|r 539 -ADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 539 -a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
+-|-.....++... |.++-+..|+-+|+.|..-+
T Consensus 156 t~~LD~~~r~~l~~l---l~~l~~~~g~Til~vTHdl~ 190 (255)
T PRK11248 156 FGALDAFTREQMQEL---LLKLWQETGKQVLLITHDIE 190 (255)
T ss_pred CCCCCHHHHHHHHHH---HHHHHHHCCCEEEEECCCHH
T ss_conf 777998999999999---99999961999999886899
No 192
>PRK06904 replicative DNA helicase; Validated
Probab=95.29 E-value=0.19 Score=28.99 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=71.3
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEEC-------CCCCCCC--EEEE-EEECHHHHH
Q ss_conf 01148469970787534479999999999856801107999723421000-------1257752--0000-444417876
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELS-------VYDGIPH--LLTP-VVTNPKKAV 478 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~-------~~~~~ph--~~~~-v~~~~~~~~ 478 (744)
|.+.--++|||.+|+|||.|..+|....+.++. ...+++-.-|..-. ...+++. +... ..++. + .
T Consensus 218 l~~g~LiViAaRPsmGKTa~alnia~n~A~~~~---~~V~~fSLEM~~~~l~~R~ls~~s~v~~~~i~~g~~l~~~-e-~ 292 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAMNLCENAAMASE---KPVLVFSLEMPAEQIMMRMLASLSRVDQTKIRTGQNLDQQ-D-W 292 (472)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC---CCEEEECCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHH-H-H
T ss_conf 875757999737987568999999999999559---9579977879999999999998649998886468856099-9-9
Q ss_pred HHHHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC----H--HHHH
Q ss_conf 89999998667699999-980778679999988642026776665432338679998445687675310----3--5899
Q gi|254780606|r 479 MALKWAVREMEERYRKM-SHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG----K--EIEG 551 (744)
Q Consensus 479 ~~l~~~~~em~~r~~~~-~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~----~--~~e~ 551 (744)
..+..+..++.....++ .....-++.....+.+...... .. + =+||||=+. ||...+ . ++..
T Consensus 293 ~~~~~~~~~l~~~~~l~idd~~~~t~~~i~~~~r~~~~~~-----~~---l--~~vvIDYLq-L~~~~~~~~~r~~ei~~ 361 (472)
T PRK06904 293 AKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYREN-----GG---L--SLIMVDYLQ-LMRAPGFEDNRTLEIAE 361 (472)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC-----CC---C--CEEEEEHHH-HCCCCCCCCCHHHHHHH
T ss_conf 9999999998468981684699999999999999999873-----89---9--789963886-60488877778899999
Q ss_pred HHHHHHHHHHCCEEEEEEEEC
Q ss_conf 999999964201358999851
Q gi|254780606|r 552 AIQRLAQMARAAGIHLIMATQ 572 (744)
Q Consensus 552 ~~~~la~~~ra~GihlilatQ 572 (744)
.-..|-++|+.++|.+|+..|
T Consensus 362 isr~LK~lAkel~ipvi~LsQ 382 (472)
T PRK06904 362 ISRSLKALAKELKVPVVALSQ 382 (472)
T ss_pred HHHHHHHHHHHHCCCEEEECC
T ss_conf 999999999997998899732
No 193
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.28 E-value=0.24 Score=28.19 Aligned_cols=53 Identities=9% Similarity=0.141 Sum_probs=41.8
Q ss_pred CHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCC
Q ss_conf 20114846997078753447999999999985680110799972342100012
Q gi|254780606|r 408 DLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVY 460 (744)
Q Consensus 408 dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~ 460 (744)
-+.|.=-.+|.|-.|.|||++|..|+.++...++-..+-+.+|+-++-|...|
T Consensus 12 pigkGQR~gI~g~~gvGKT~Ll~~i~~~~~~~~~~~~~v~~lIGER~rEv~e~ 64 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDM 64 (249)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHH
T ss_conf 61678677887899988999999999999985898499999971657999999
No 194
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=95.28 E-value=0.18 Score=29.02 Aligned_cols=33 Identities=30% Similarity=0.394 Sum_probs=23.4
Q ss_pred EEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 3211201148469970787534479999999999
Q gi|254780606|r 404 SVIADLANMPHILVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 404 ~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
-|-+++.+.--+-|.|..|||||+++++| ++|+
T Consensus 342 ~vsf~i~~GE~l~lvG~sGsGKSTl~r~l-~gl~ 374 (623)
T PRK10261 342 KVSFDLWPGETLSLVGESGSGKSTTGRAL-LRLV 374 (623)
T ss_pred CCCCCCCCCCEEEEECCCCCCHHHHHHHH-HCCC
T ss_conf 34003589958999767876689999998-5664
No 195
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.27 E-value=0.052 Score=32.78 Aligned_cols=54 Identities=26% Similarity=0.339 Sum_probs=32.5
Q ss_pred CCEEECC----HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEE
Q ss_conf 8732112----0114846997078753447999999999985680110799972342100
Q gi|254780606|r 402 GESVIAD----LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLEL 457 (744)
Q Consensus 402 g~~~~~d----l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~ 457 (744)
++++.-| +.+.-.+-|-|.||||||++++. |+.+ |....-++.+--+|-+....
T Consensus 353 ~~~vL~~is~~I~~Ge~vaIVG~SGsGKSTL~~L-L~rl-y~p~~G~I~idG~di~~i~~ 410 (593)
T PRK10790 353 DNLVLKNINLSVPSRNFVALVGHTGSGKSTLASL-LMGY-YPLTEGEIRLDGRPLSSLSH 410 (593)
T ss_pred CCHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHH-HHHH-CCCCCCCCCCCCEECCCCCH
T ss_conf 9801426010448997899879998868999999-9985-56789941659932442468
No 196
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.23 E-value=0.25 Score=28.08 Aligned_cols=160 Identities=17% Similarity=0.259 Sum_probs=79.3
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCC------------CEECCCCCCCCEEEEEEE
Q ss_conf 21120114846997078753447999999999985680110799972342------------100012577520000444
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKM------------LELSVYDGIPHLLTPVVT 472 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~------------~~~~~~~~~ph~~~~v~~ 472 (744)
+-+++.+.--+-|-|-+|||||++|+. |.+| ..|+.=++++-+ |. .-|-.|.-.||+ |
T Consensus 21 is~~v~~Ge~~~iiGpSGsGKSTll~~-i~Gl---~~p~~G~I~~~g-~~i~~~~~~~r~ig~vfQ~~~Lfp~l-----t 90 (239)
T cd03296 21 VSLDIPSGELVALLGPSGSGKTTLLRL-IAGL---ERPDSGTILFGG-EDATDVPVQERNVGFVFQHYALFRHM-----T 90 (239)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHH-HHCC---CCCCCEEEEECC-EECCCCCHHHCCEEEECCCCCCCCCC-----C
T ss_conf 386988998999999999779999999-9769---999863999999-99999996567767981782106799-----6
Q ss_pred CHHHHHHHHHH-------HHHHHHHH-HHHHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEH
Q ss_conf 41787689999-------99866769-99999807786799---------999886420267766654323386799984
Q gi|254780606|r 473 NPKKAVMALKW-------AVREMEER-YRKMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIV 535 (744)
Q Consensus 473 ~~~~~~~~l~~-------~~~em~~r-~~~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvvi 535 (744)
-.+..+..|+. -..|+.+| .+++...+..++.. -.+|++-.+.- ..-|. |++.
T Consensus 91 V~eNi~~~l~~~~~~~~~~~~e~~~rv~~~l~~v~l~~~~~~~p~eLSGGq~QRVaiARAl---------~~~P~-vlll 160 (239)
T cd03296 91 VFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL---------AVEPK-VLLL 160 (239)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH---------HCCCC-EEEE
T ss_conf 9999987997335456998999999999998654997677489666999898999999987---------64999-8997
Q ss_pred HH-HHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEE
Q ss_conf 45-687675310358999999999642013589998516544441467885056305720
Q gi|254780606|r 536 DE-MADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQ 594 (744)
Q Consensus 536 DE-~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~ 594 (744)
|| ++.|-- ...+..+..|..+-+..||-.|+.|..+. +++ .+.-||++-
T Consensus 161 DEP~s~LD~---~~~~~i~~~l~~l~~e~~~T~i~vTHd~~-~a~------~laDri~vm 210 (239)
T cd03296 161 DEPFGALDA---KVRKELRRWLRRLHDELHVTTVFVTHDQE-EAL------EVADRVVVM 210 (239)
T ss_pred CCCCCCCCH---HHHHHHHHHHHHHHHHHCCEEEEECCCHH-HHH------HHCCEEEEE
T ss_conf 388664699---99999999999999985998999988999-999------969999999
No 197
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.23 E-value=0.046 Score=33.16 Aligned_cols=138 Identities=20% Similarity=0.244 Sum_probs=62.7
Q ss_pred CCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHH
Q ss_conf 87321120----11484699707875344799999999998568011079997234210001257752000044441787
Q gi|254780606|r 402 GESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKA 477 (744)
Q Consensus 402 g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~ 477 (744)
.++++-|+ .+.-.+-|.|.+|||||++++. |++++ ...--++.+--.|.+......+.. + +.-+--|..-.
T Consensus 14 ~~~vL~~i~l~i~~G~~vaIvG~sGsGKSTLl~l-l~gl~-~p~~G~i~i~g~~~~~~~~~~~~~--~-i~~v~Q~~~lf 88 (173)
T cd03246 14 EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARL-ILGLL-RPTSGRVRLDGADISQWDPNELGD--H-VGYLPQDDELF 88 (173)
T ss_pred CCCCEECEEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC-CCCCCEEEECCEECCCCCHHHHHC--C-EEEEECCCEEC
T ss_conf 9864547699985999999999999809999999-96666-679998999999933289989842--0-89990888367
Q ss_pred HHHHH-H-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 68999-9-998667699999980778679999988642026776665432338679998445687675310358999999
Q gi|254780606|r 478 VMALK-W-AVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQR 555 (744)
Q Consensus 478 ~~~l~-~-~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~ 555 (744)
...++ + +..-...|.. +++ .-. .-|. +++.||----+. .+.+..+.+
T Consensus 89 ~~ti~eNiLSGGQkQRva-lAR-----------------al~---------~~p~-ililDEpts~LD---~~~e~~i~~ 137 (173)
T cd03246 89 SGSIAENILSGGQRQRLG-LAR-----------------ALY---------GNPR-ILVLDEPNSHLD---VEGERALNQ 137 (173)
T ss_pred CCCHHHHCCCHHHHHHHH-HHH-----------------HHH---------CCCC-EEEEECCCCCCC---HHHHHHHHH
T ss_conf 775899767699999999-999-----------------982---------7999-999968766899---899999999
Q ss_pred HHHHHHCCEEEEEEEECCCC
Q ss_conf 99964201358999851654
Q gi|254780606|r 556 LAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 556 la~~~ra~GihlilatQrp~ 575 (744)
+-..-+..|.-+|+.|.|++
T Consensus 138 ~l~~l~~~~~Tvi~vtH~~~ 157 (173)
T cd03246 138 AIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred HHHHHHHCCCEEEEECCCHH
T ss_conf 99978648989999847999
No 198
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.21 E-value=0.13 Score=30.15 Aligned_cols=145 Identities=17% Similarity=0.269 Sum_probs=83.5
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCC---E-ECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHH
Q ss_conf 9970787534479999999999856801107999723421---0-00125775200004444178768999999866769
Q gi|254780606|r 416 LVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKML---E-LSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEER 491 (744)
Q Consensus 416 lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~---~-~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r 491 (744)
...|-||.|||+.|-=|-....+++....|-||=+|-=+. | |..|..|-.+-..++.++++...+|. ++..
T Consensus 180 alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv~~~~eL~~aL~----~l~~- 254 (404)
T PRK06995 180 ALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALA----ELRN- 254 (404)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH----HHCC-
T ss_conf 98668887637589999999999838983799976875478999999999875955999599999999999----7089-
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEE
Q ss_conf 99999807786799999886420267766654323386799984456876753103589999999996420135899985
Q gi|254780606|r 492 YRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMAT 571 (744)
Q Consensus 492 ~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihlilat 571 (744)
+=+|.||=-. + ..........+..|...+...-+||+|..
T Consensus 255 --------------------------------------~dlILIDTaG-r-s~rD~~~~e~l~~l~~~~~~~~~~LVLsa 294 (404)
T PRK06995 255 --------------------------------------KHIVLIDTVG-M-SQRDRMVSEQIAMLHGAGAPVQRLLLLNA 294 (404)
T ss_pred --------------------------------------CCEEEEECCC-C-CCCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf --------------------------------------9999980999-8-97688899999999735788528999779
Q ss_pred CCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCC
Q ss_conf 16544441467885056305720368111003267
Q gi|254780606|r 572 QRPSVDVITGTIKANFPIRISFQVTSKIDSRTILG 606 (744)
Q Consensus 572 Qrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~ 606 (744)
-.=.. .+...++.=-...+.--+-++.|--.-+|
T Consensus 295 t~~~~-dl~~i~~~f~~~~~~~~I~TKLDEt~~~G 328 (404)
T PRK06995 295 TSHGD-TLNEVVQAYRGPGLAGCILTKLDEAASLG 328 (404)
T ss_pred CCCHH-HHHHHHHHHCCCCCCEEEEECCCCCCCHH
T ss_conf 89999-99999998446999839983040679723
No 199
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.20 E-value=0.034 Score=34.07 Aligned_cols=56 Identities=34% Similarity=0.554 Sum_probs=33.0
Q ss_pred EEECCCCCEEECCHHHCCC--EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEE-EECCCCC
Q ss_conf 4205788732112011484--6997078753447999999999985680110799-9723421
Q gi|254780606|r 396 LGKTISGESVIADLANMPH--ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMI-MVDPKML 455 (744)
Q Consensus 396 ~g~~~~g~~~~~dl~~~PH--~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~-liD~k~~ 455 (744)
||....-.-.+..+.+.|| +||+|.||||||..|.+++..+ +.++ .+++ +=||=..
T Consensus 62 LG~~~~~~~~l~~~~~~~~GlilitGptGSGKtTtl~a~l~~~---~~~~-~~i~tiEdPvE~ 120 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL---NTPE-KNIITVEDPVEY 120 (264)
T ss_pred HCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH---CCCC-CEEEEEECCCCC
T ss_conf 5799999999999970899889997899997799999999864---3688-508998676314
No 200
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=95.19 E-value=0.24 Score=28.18 Aligned_cols=183 Identities=18% Similarity=0.209 Sum_probs=80.8
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCC--HHHEEEEEECCC---CCEEC---------CCCCCCCEEEEE
Q ss_conf 2112011484699707875344799999999998568--011079997234---21000---------125775200004
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLR--PDECRMIMVDPK---MLELS---------VYDGIPHLLTPV 470 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~--p~~~~~~liD~k---~~~~~---------~~~~~ph~~~~v 470 (744)
|-+++.+.=-+-|.|..|||||+++++| ++|+.... -.++.|.-.|.- .-++. .|++--.-+.+.
T Consensus 35 Vsf~i~~GEilgivGeSGsGKSTl~~~i-~gll~~~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~I~~vfQdp~~sLnP~ 113 (330)
T PRK09473 35 LNFSLRAGETLGIVGESGSGKSQTAFAL-MGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPY 113 (330)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHH-HCCCCCCCCEEEEEEECCEECCCCCHHHHHHHHCCCEEEEEECCCHHCCCC
T ss_conf 4768889989999868987799999999-768888883358999999986658999999863066799960750113841
Q ss_pred EECHHHHHHHHHHH----H-HHHHHHHHHHHHCCCCCHHH------------HHHHHHHHHCCCCCCCCCCCCCCCEEEE
Q ss_conf 44417876899999----9-86676999999807786799------------9998864202677666543233867999
Q gi|254780606|r 471 VTNPKKAVMALKWA----V-REMEERYRKMSHLSVRNIKS------------YNERISTMYGEKPQGCGDDMRPMPYIVI 533 (744)
Q Consensus 471 ~~~~~~~~~~l~~~----~-~em~~r~~~~~~~~~~~i~~------------~n~~~~~~~~~~~~~~~~~~~~~p~ivv 533 (744)
.+=.+.....+... . +..++..+++...+..+... -.+|+...+. +---|. ++
T Consensus 114 ~~i~~~l~e~l~~~~~~~~~~~~~~~~~lL~~v~l~~~~~~l~~yP~eLSGGq~QRV~IArA---------L~~~P~-lL 183 (330)
T PRK09473 114 MRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMA---------LLCRPK-LL 183 (330)
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHCCHHHHHHHHHHHH---------HHCCCC-EE
T ss_conf 04566555789885389989999999988887607217888734815339889999999999---------970999-99
Q ss_pred EHHHHHH-HHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEE----ECCCHHHCCHHCCCC
Q ss_conf 8445687-67531035899999999964201358999851654444146788505630572----036811100326763
Q gi|254780606|r 534 IVDEMAD-LMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISF----QVTSKIDSRTILGEH 608 (744)
Q Consensus 534 viDE~a~-l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~----~v~~~~dsr~il~~~ 608 (744)
|.||=.- |-.....++-+ -|..+-+..|+-+|+-|-..+ + + ..+--||+. ++-...+...|+..+
T Consensus 184 I~DEPTsaLDv~~q~~Il~---ll~~l~~e~g~til~ITHDl~--~----v-~~~~DrI~VMy~G~iVE~G~~~~i~~~P 253 (330)
T PRK09473 184 IADEPTTALDVTVQAQIMT---LLNELKREFNTAIIMITHDLG--V----V-AGICDKVLVMYAGRTMEYGNARDVFYQP 253 (330)
T ss_pred EECCCCCCCCHHHHHHHHH---HHHHHHHHCCCCEEEECCCHH--H----H-HHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 9738755479999999999---999999974994799828899--9----9-9869989999898899978899997379
No 201
>KOG0735 consensus
Probab=95.19 E-value=0.0088 Score=38.07 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=43.0
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCE
Q ss_conf 0114846997078753447999999999985680110799972342100012577520
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHL 466 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~ 466 (744)
.-..+|+|+.|.-|+|||+++++++-- ...+...++.++|++.....-++.+-|+
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~---~~k~~~~hv~~v~Cs~l~~~~~e~iQk~ 482 (952)
T KOG0735 428 VFRHGNILLNGPKGSGKTNLVKALFDY---YSKDLIAHVEIVSCSTLDGSSLEKIQKF 482 (952)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHH---HCCCCCEEEEEEECHHCCCHHHHHHHHH
T ss_conf 334661898679987776999999987---5156506999975221042048999999
No 202
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.16 E-value=0.22 Score=28.45 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=28.5
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE
Q ss_conf 211201148469970787534479999999999856801107999
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM 449 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l 449 (744)
+-+++.+.-.+-|.|..|||||+++++| ++| ..|+.=++.+
T Consensus 24 isl~i~~Gei~~iiG~sGsGKSTLl~~i-~gl---~~p~~G~I~~ 64 (257)
T PRK10619 24 VSLQANAGDVISIIGSSGSGKSTFLRCI-NFL---EKPSEGSIVV 64 (257)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHH-HCC---CCCCCCEEEE
T ss_conf 0668879979999989998199999999-659---9999818999
No 203
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.14 E-value=0.11 Score=30.42 Aligned_cols=45 Identities=22% Similarity=0.418 Sum_probs=29.0
Q ss_pred CCCEEECC----HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE
Q ss_conf 88732112----01148469970787534479999999999856801107999
Q gi|254780606|r 401 SGESVIAD----LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM 449 (744)
Q Consensus 401 ~g~~~~~d----l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l 449 (744)
.+..++-| +.+.--+-+.|..|||||++++. |++++ .|+.=++.+
T Consensus 11 g~~~~L~~vs~~v~~Gei~~liG~nGaGKSTLl~~-i~Gl~---~p~~G~I~~ 59 (222)
T cd03224 11 GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKT-IMGLL---PPRSGSIRF 59 (222)
T ss_pred CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHH-HHCCC---CCCCEEEEE
T ss_conf 99999814089988998999999999859999999-97798---899609999
No 204
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=95.14 E-value=0.15 Score=29.71 Aligned_cols=50 Identities=10% Similarity=0.164 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf 76603899999999749862322000001007899999999998797570
Q gi|254780606|r 680 ERSNLYAKAVDLVIDNQRCSTSFIQRRLQIGYNRAALLVERMEQEGLVSE 729 (744)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~s~s~~qr~~~~g~~ra~~~~~~~e~~g~~~~ 729 (744)
..|+|-+-..++...++-.++.-+..+|.+|-..+...++.|+.+|.|-.
T Consensus 972 ~~d~l~~lv~r~art~GPft~~~~a~~~gl~~~~~~~aL~~L~~~G~v~~ 1021 (1490)
T PRK09751 972 VSYPLRDLFLRYLRAHALVTAEQLAHEFSLGIAIVEEQLQQLREQGLVMN 1021 (1490)
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEC
T ss_conf 51589999999987169866999998868988999999999996697752
No 205
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.13 E-value=0.051 Score=32.82 Aligned_cols=68 Identities=24% Similarity=0.393 Sum_probs=47.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCC---C-EECCCCCCCCEEEEEEECHHHHHHHHH
Q ss_conf 6997078753447999999999985680110799972342---1-000125775200004444178768999
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKM---L-ELSVYDGIPHLLTPVVTNPKKAVMALK 482 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~---~-~~~~~~~~ph~~~~v~~~~~~~~~~l~ 482 (744)
+.+.|-||.|||+.|-=|-..+.+++....|-|+=+|-=+ + -|..|..+-.+-..++.++.+...+|.
T Consensus 197 i~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRigA~eQLk~ya~il~vp~~vv~~~~~l~~~l~ 268 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELAKALE 268 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHH
T ss_conf 999778887578899999999999738996799980777678999999999995974899399999999998
No 206
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=95.13 E-value=0.047 Score=33.07 Aligned_cols=19 Identities=16% Similarity=0.424 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHCCEEEEEE
Q ss_conf 9999999964201358999
Q gi|254780606|r 551 GAIQRLAQMARAAGIHLIM 569 (744)
Q Consensus 551 ~~~~~la~~~ra~Gihlil 569 (744)
+.|..|.++||---|-+++
T Consensus 4511 dsi~kllrra~e~kvmivf 4529 (4600)
T COG5271 4511 DSIRKLLRRAQEEKVMIVF 4529 (4600)
T ss_pred HHHHHHHHHHHHCCEEEEE
T ss_conf 8999999986546459999
No 207
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.13 E-value=0.074 Score=31.73 Aligned_cols=32 Identities=31% Similarity=0.413 Sum_probs=23.9
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 211201148469970787534479999999999
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
+-+++.+.-.+.|.|.+|||||++++. |++++
T Consensus 27 isl~i~~Ge~v~ivG~sGsGKSTLl~l-l~g~~ 58 (207)
T cd03369 27 VSFKVKAGEKIGIVGRTGAGKSTLILA-LFRFL 58 (207)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHH-HHHHC
T ss_conf 588986999999999999879999999-99872
No 208
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=95.12 E-value=0.038 Score=33.69 Aligned_cols=153 Identities=17% Similarity=0.265 Sum_probs=73.3
Q ss_pred CEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCC------------EECCCCCCCCEEEEE
Q ss_conf 73211201148469970787534479999999999856801107999723421------------000125775200004
Q gi|254780606|r 403 ESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKML------------ELSVYDGIPHLLTPV 470 (744)
Q Consensus 403 ~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~------------~~~~~~~~ph~~~~v 470 (744)
+-+-+++.+.--+.+-|-.|+|||++|+. |.+|. .|+.=.+ ++|-+.+ -|-.|.-.||+- |
T Consensus 20 ~~vsl~i~~Ge~~~llGpsG~GKSTllr~-i~Gl~---~p~~G~I-~i~g~~v~~~~~~~r~ig~vfQ~~~L~p~lt--V 92 (369)
T PRK11000 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRM-IAGLE---DITSGDL-FIGEKRMNDVPPAERGVGMVFQSYALYPHLS--V 92 (369)
T ss_pred CCCEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCEEE-EECCEECCCCCHHHCCEEEEECCCCCCCCCC--H
T ss_conf 64388987998999999997369999999-97799---9995499-9999999879977878699940785478989--9
Q ss_pred EECHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHH-HH
Q ss_conf 4441787689999998667699999-9807786799---------99988642026776665432338679998445-68
Q gi|254780606|r 471 VTNPKKAVMALKWAVREMEERYRKM-SHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDE-MA 539 (744)
Q Consensus 471 ~~~~~~~~~~l~~~~~em~~r~~~~-~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE-~a 539 (744)
..+..........-..++.+|...+ ...+..++.+ -.+|++-.+.- -.-|.| ++.|| ++
T Consensus 93 ~eNi~~~l~~~~~~~~e~~~rv~~~l~~~~l~~~~~r~p~~LSGGq~QRvaiARAL---------~~~P~i-lllDEP~s 162 (369)
T PRK11000 93 AENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTL---------VAEPSV-FLLDEPLS 162 (369)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHCCHHHCCHHHHHHHHHHHHH---------HCCCCE-EEECCCCC
T ss_conf 99997788763898899999999999863745355588746694277999999886---------259985-88436667
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 767531035899999999964201358999851654
Q gi|254780606|r 540 DLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 540 ~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
.|-.....+ ....|.++-+..|+-.|+.|-...
T Consensus 163 ~LD~~~r~~---~~~~l~~l~~~~g~T~i~vTHD~~ 195 (369)
T PRK11000 163 NLDAALRVQ---MRIEISRLHKRLGRTMIYVTHDQV 195 (369)
T ss_pred CCCHHHEEH---HHHHHHHHHHHHCCEEEEEECCHH
T ss_conf 888666524---789999999986985999908999
No 209
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.09 E-value=0.22 Score=28.53 Aligned_cols=207 Identities=16% Similarity=0.170 Sum_probs=97.9
Q ss_pred CCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC-------CCEE--------CCCCCCC-CEEEEE
Q ss_conf 12011484699707875344799999999998568011079997234-------2100--------0125775-200004
Q gi|254780606|r 407 ADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK-------MLEL--------SVYDGIP-HLLTPV 470 (744)
Q Consensus 407 ~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k-------~~~~--------~~~~~~p-h~~~~v 470 (744)
+++.+.=-+.|-|.+|||||++++. |.+|+ .|+.=++++-|.. ..++ ..|+.-. +++...
T Consensus 32 l~i~~Ge~~aIiG~nGsGKSTL~~~-l~Gll---~p~~G~v~~~~~~i~~~~~~~~~~~~~r~~vG~vfQ~P~~qlf~~t 107 (289)
T PRK13645 32 LTFKKNKVTCVIGTTGSGKSTMIQL-TNGLI---ISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQET 107 (289)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCCEEEECCEECCCCCCCHHHHHHHHCCEEEEEECCCCCCCHHH
T ss_conf 8988998999999999579999999-96598---8999859999998347653155789976367999667764626637
Q ss_pred E-ECHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHHHH------------HHHHHHHCCCCCCCCCCCCCCCEEEEEHH
Q ss_conf 4-44178768999999866769-9999980778679999------------98864202677666543233867999844
Q gi|254780606|r 471 V-TNPKKAVMALKWAVREMEER-YRKMSHLSVRNIKSYN------------ERISTMYGEKPQGCGDDMRPMPYIVIIVD 536 (744)
Q Consensus 471 ~-~~~~~~~~~l~~~~~em~~r-~~~~~~~~~~~i~~~n------------~~~~~~~~~~~~~~~~~~~~~p~ivvviD 536 (744)
+ .|.......+..-..|+.+| .+.+...+.. ..|- +|++-... +.--|.| ++.|
T Consensus 108 V~~~iafg~~n~g~~~~e~~~rv~~~l~~v~L~--~~~~~~~p~~LSGGqkqRVaiA~a---------La~~P~i-LilD 175 (289)
T PRK13645 108 IEKDIAFGPVNLGENKQEAYKKVPELLKLVQLP--EDYVKRSPFELSGGQKRRVALAGI---------IAMDGNT-LVLD 175 (289)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC--HHHHCCCCCCCCHHHHHHHHHHHH---------HHCCCCE-EEEE
T ss_conf 999998679876999999999999999876998--667418901099999999999999---------9639999-9995
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCC
Q ss_conf 56876753103589999999996420135899985165444414678850563057203681110032676316885689
Q gi|254780606|r 537 EMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGR 616 (744)
Q Consensus 537 E~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~ 616 (744)
|=..-+. ....+..+.-|-++.+..|+-+|+.|...+ .+ +++--||..- .+-++|.+ +-.+.++.+
T Consensus 176 EPTagLD--p~~~~~i~~ll~~L~~~~g~Tvi~vtHdm~--~v-----~~~aDrviVm----~~G~iv~~-G~p~evf~~ 241 (289)
T PRK13645 176 EPTGGLD--PKGEEDFINLFERLNKEYKKRIIMVTHNMD--QV-----LRIADEVIVM----HEGKVISI-GSPFEIFSN 241 (289)
T ss_pred CCCCCCC--HHHHHHHHHHHHHHHHHCCCEEEEECCCHH--HH-----HHHCCEEEEE----ECCEEEEE-CCHHHHHCC
T ss_conf 8876489--899999999999999956999999915999--99-----9979999999----89989998-788998679
Q ss_pred CCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
Q ss_conf 84686468984389993438988999999999840887
Q gi|254780606|r 617 GDMLYMSGGGRIQRVHGPLVSDIEIEKVVQHLKKQGCP 654 (744)
Q Consensus 617 gd~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 654 (744)
-|+|-..+ +.-..+.++...++..|-.
T Consensus 242 ~~~l~~~~-----------l~~P~~~~l~~~L~~~g~~ 268 (289)
T PRK13645 242 QELLTKIE-----------IDPPKLYQLMYKLKNKGID 268 (289)
T ss_pred HHHHHHCC-----------CCCCHHHHHHHHHHHCCCC
T ss_conf 99999779-----------9998599999999976998
No 210
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.08 E-value=0.068 Score=31.98 Aligned_cols=68 Identities=25% Similarity=0.394 Sum_probs=49.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCC---CE-ECCCCCCCCEEEEEEECHHHHHHHHH
Q ss_conf 6997078753447999999999985680110799972342---10-00125775200004444178768999
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKM---LE-LSVYDGIPHLLTPVVTNPKKAVMALK 482 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~---~~-~~~~~~~ph~~~~v~~~~~~~~~~l~ 482 (744)
+.+.|-||+|||+.|-=|-....+++....|-||=+|.=+ +| |..|..+-.+=..++.++.+...+|.
T Consensus 213 valVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp~~v~~~~~~l~~al~ 284 (412)
T PRK05703 213 VALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGIPVKVAYDPKELAKALE 284 (412)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH
T ss_conf 999888887567699999999999729981799983767777999999999971973798479999999998
No 211
>PRK06526 transposase; Provisional
Probab=95.08 E-value=0.28 Score=27.79 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 484699707875344799999999998
Q gi|254780606|r 412 MPHILVAGTTGSGKSVAINTMIMSLLY 438 (744)
Q Consensus 412 ~PH~lvaG~TgsGKS~~l~~~i~sl~~ 438 (744)
.=++++.|.||.|||-+-.++-...+.
T Consensus 98 ~~Nvil~G~~GtGKThLA~Alg~~A~~ 124 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 887899899998689999999999998
No 212
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.06 E-value=0.17 Score=29.17 Aligned_cols=45 Identities=24% Similarity=0.356 Sum_probs=30.2
Q ss_pred EEEEEEECCCCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 689842057887321120----1148469970787534479999999999
Q gi|254780606|r 392 LALCLGKTISGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 392 l~~~~g~~~~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
|....|+.-...+++-|+ .+.-.+.+-|..|||||++|+.| ++++
T Consensus 9 ls~~y~~~~~~~~vL~~is~~i~~Gei~~llG~nGsGKSTLl~~l-~G~~ 57 (202)
T cd03233 9 ISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKAL-ANRT 57 (202)
T ss_pred EEEEECCCCCEEEEEECEEEEECCCEEEEEECCCCCCHHHHHHHH-HCCC
T ss_conf 699978998268999770889809849999989999889999998-3787
No 213
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.05 E-value=0.036 Score=33.91 Aligned_cols=207 Identities=18% Similarity=0.311 Sum_probs=96.0
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEEC-------------CCCCCCC-EEEE-
Q ss_conf 211201148469970787534479999999999856801107999723421000-------------1257752-0000-
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELS-------------VYDGIPH-LLTP- 469 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~-------------~~~~~ph-~~~~- 469 (744)
+-+++.+.=.+.|-|.+|||||++++. |.+|+ .|+.=++ ++|-+.+++. .|+..-+ ++..
T Consensus 25 isl~I~~Ge~~aiiG~NGaGKSTLl~~-i~Gll---~p~~G~I-~~~G~~i~~~~~~~~~~r~~ig~vfQ~p~~~l~~~t 99 (285)
T PRK13636 25 ININIKKGEVTAILGGNGAGKSTLFQN-LNGIL---KPSSGRI-LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSAS 99 (285)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCCEE-EECCEECCCCHHHHHHHHHHEEEEEECCCCCCCCCC
T ss_conf 378987998999999999809999999-96598---8886089-999999874434499998740699707642447574
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHH
Q ss_conf 444417876899999986676999-999807786799---------9998864202677666543233867999844568
Q gi|254780606|r 470 VVTNPKKAVMALKWAVREMEERYR-KMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMA 539 (744)
Q Consensus 470 v~~~~~~~~~~l~~~~~em~~r~~-~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a 539 (744)
|..+.......+..-..|+.+|.. .+...|..++.. -.+|+.-... +..-|. +++.||=.
T Consensus 100 V~e~v~~g~~~~g~~~~e~~~rv~~~L~~~gl~~~~~~~~~~LSGGqkqRvaIA~a---------La~~P~-iLlLDEPT 169 (285)
T PRK13636 100 VYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGV---------LVMEPK-VLVLDEPT 169 (285)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHH---------HHCCCC-EEEEECCC
T ss_conf 99999999998599999999999999987598866528800199999999999999---------974998-99997875
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCCCCE
Q ss_conf 76753103589999999996420135899985165444414678850563057203681110032676316885689846
Q gi|254780606|r 540 DLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDM 619 (744)
Q Consensus 540 ~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~gd~ 619 (744)
.-+. .......+..|.++.+..|+-+|+.|...+ .+ +.+--||.+=- +.++|.+.. .+.++.+-|+
T Consensus 170 agLD--p~~~~~i~~ll~~l~~e~g~TiilvtHd~~--~v-----~~~aDrvivl~----~G~iv~~G~-p~evf~~~~~ 235 (285)
T PRK13636 170 AGLD--PMGVSEIMKLLVEMQKELGLTIIIATHDID--IV-----PLYCDNVFVMK----EGRVILQGN-PKEVFAEKEM 235 (285)
T ss_pred CCCC--HHHHHHHHHHHHHHHHHCCCEEEEECCCHH--HH-----HHHCCEEEEEE----CCEEEEECC-HHHHHCCHHH
T ss_conf 5599--999999999999999844989999948899--99-----99699999998----998999869-9999669999
Q ss_pred EEECCCCCEEEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 86468984389993438988999999999840
Q gi|254780606|r 620 LYMSGGGRIQRVHGPLVSDIEIEKVVQHLKKQ 651 (744)
Q Consensus 620 l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 651 (744)
|...+= .-..+-+++..++..
T Consensus 236 l~~~~l-----------~~P~~~~l~~~L~~~ 256 (285)
T PRK13636 236 LRKVNL-----------RLPRIGHLMEILKEK 256 (285)
T ss_pred HHHCCC-----------CCCCHHHHHHHHHHH
T ss_conf 997799-----------999699999999883
No 214
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.05 E-value=0.11 Score=30.62 Aligned_cols=139 Identities=22% Similarity=0.294 Sum_probs=67.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEE-----EECCC-C-----------CEECCCCCCCCEEEEEEECHHHH
Q ss_conf 6997078753447999999999985680110799-----97234-2-----------10001257752000044441787
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMI-----MVDPK-M-----------LELSVYDGIPHLLTPVVTNPKKA 477 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~-----liD~k-~-----------~~~~~~~~~ph~~~~v~~~~~~~ 477 (744)
.-+.|-.|||||.||| ||.+|+ .||+=++. |+|-. + .-|-.++-+||+- |-.|....
T Consensus 27 TAlFG~SGsGKTslin-~IaGL~---rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t--VrgNL~YG 100 (352)
T COG4148 27 TALFGPSGSGKTSLIN-MIAGLT---RPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT--VRGNLRYG 100 (352)
T ss_pred EEEECCCCCCHHHHHH-HHHCCC---CCCCCEEEECCEEEECCCCCCCCCHHHHEEEEEEECCCCCCCEE--EECCHHHH
T ss_conf 9996478887161898-974347---76661899898886515667446754611356740020166517--73220010
Q ss_pred HHHHHHHHHHHHHHHH------HHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHH
Q ss_conf 6899999986676999------9998077867999998864202677666543233867999844568767531035899
Q gi|254780606|r 478 VMALKWAVREMEERYR------KMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEG 551 (744)
Q Consensus 478 ~~~l~~~~~em~~r~~------~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~ 551 (744)
...- ...++++--. ++.++-.+--.+-.+|++..+. +---|.|+..-.-||-|-+.-+.|+--
T Consensus 101 ~~~~--~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRA---------LLt~P~LLLmDEPLaSLD~~RK~Eilp 169 (352)
T COG4148 101 MWKS--MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRA---------LLTAPELLLMDEPLASLDLPRKREILP 169 (352)
T ss_pred CCCC--CHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHH---------HHCCCCEEEECCCHHHCCCCHHHHHHH
T ss_conf 1435--36779999998484867850877567615567778888---------754977343068403236510467789
Q ss_pred HHHHHHHHHHCCEEEEEEEECC
Q ss_conf 9999999642013589998516
Q gi|254780606|r 552 AIQRLAQMARAAGIHLIMATQR 573 (744)
Q Consensus 552 ~~~~la~~~ra~GihlilatQr 573 (744)
++.||.+. .-|-++.-|-.
T Consensus 170 ylERL~~e---~~IPIlYVSHS 188 (352)
T COG4148 170 YLERLRDE---INIPILYVSHS 188 (352)
T ss_pred HHHHHHHH---CCCCEEEEECC
T ss_conf 99998762---18878999368
No 215
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.04 E-value=0.24 Score=28.27 Aligned_cols=155 Identities=19% Similarity=0.296 Sum_probs=81.0
Q ss_pred CEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHH--
Q ss_conf 732112011484699707875344799999999998568011079997234210001257752000044441787689--
Q gi|254780606|r 403 ESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMA-- 480 (744)
Q Consensus 403 ~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~-- 480 (744)
++|-+-|.+.--+-|.|.-|||||.+.+ ||.+++ .|.. -=++++-.-..|..|.....+.--+.-|+..+..-
T Consensus 30 ~~vSFtL~~~QTlaiIG~NGSGKSTLak-MlaGmi---~PTs-G~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl 104 (267)
T COG4167 30 KPVSFTLREGQTLAIIGENGSGKSTLAK-MLAGMI---EPTS-GEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRL 104 (267)
T ss_pred CCEEEEECCCCEEEEECCCCCCHHHHHH-HHHCCC---CCCC-CEEEECCCCCCCCCHHHHHHHEEEEECCCCCCCCCHH
T ss_conf 4157896079679998269974758999-983555---8988-5487888413123467664444345418865568022
Q ss_pred -----HH---HHHH------HHHHHHHHHHHCCCC-CHHHHH---------HHHHHHHCCCCCCCCCCCCCCCEEEEEHH
Q ss_conf -----99---9998------667699999980778-679999---------98864202677666543233867999844
Q gi|254780606|r 481 -----LK---WAVR------EMEERYRKMSHLSVR-NIKSYN---------ERISTMYGEKPQGCGDDMRPMPYIVIIVD 536 (744)
Q Consensus 481 -----l~---~~~~------em~~r~~~~~~~~~~-~i~~~n---------~~~~~~~~~~~~~~~~~~~~~p~ivvviD 536 (744)
|+ .++. .|++-|..+...|.- +-..|+ +|++-.+.- ---|.|+|+-|
T Consensus 105 ~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARAL---------IL~P~iIIaDe 175 (267)
T COG4167 105 RIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARAL---------ILRPKIIIADE 175 (267)
T ss_pred HHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHH---------HCCCCEEEEHH
T ss_conf 144563453340356883888999999999865576302345554061157789999987---------55973797354
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCC
Q ss_conf 56876753103589999999996420135899985165
Q gi|254780606|r 537 EMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRP 574 (744)
Q Consensus 537 E~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp 574 (744)
-++.|-|.....+-.++..|- -..||-.|.-+|.-
T Consensus 176 Al~~LD~smrsQl~NL~LeLQ---ek~GiSyiYV~Qhl 210 (267)
T COG4167 176 ALASLDMSMRSQLINLMLELQ---EKQGISYIYVTQHI 210 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHCCEEEEEECHH
T ss_conf 340000899999999999999---97295399981202
No 216
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.04 E-value=0.031 Score=34.35 Aligned_cols=154 Identities=19% Similarity=0.342 Sum_probs=77.2
Q ss_pred CCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC--C------C---CCEECCCCCCCCE
Q ss_conf 87321120----114846997078753447999999999985680110799972--3------4---2100012577520
Q gi|254780606|r 402 GESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD--P------K---MLELSVYDGIPHL 466 (744)
Q Consensus 402 g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD--~------k---~~~~~~~~~~ph~ 466 (744)
+..++-|+ .+.--+-+-|-.|||||++|+ ||.++- .|+.=++.+-+ - | +.-|-.|.-.||+
T Consensus 17 ~~~al~~isl~i~~Gef~tlLGPSGcGKTTlLR-~IAGfe---~p~~G~I~l~g~~i~~lpp~kR~ig~VFQ~YALFPHm 92 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLR-MIAGFE---QPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHM 92 (352)
T ss_pred CEEEEECCEEEECCCCEEEEECCCCCCHHHHHH-HHHCCC---CCCCCEEEECCEECCCCCHHHCCCCEEECCCCCCCCC
T ss_conf 726773214454488689998998888899999-996777---8888659999999888994226523260676668888
Q ss_pred EEEEEECHHHHHHHHHH--HHHHHHHHHHHH-HH-----CCCCCHH----HHHHHHHHHHCCCCCCCCCCCCCCCEEEEE
Q ss_conf 00044441787689999--998667699999-98-----0778679----999988642026776665432338679998
Q gi|254780606|r 467 LTPVVTNPKKAVMALKW--AVREMEERYRKM-SH-----LSVRNIK----SYNERISTMYGEKPQGCGDDMRPMPYIVII 534 (744)
Q Consensus 467 ~~~v~~~~~~~~~~l~~--~~~em~~r~~~~-~~-----~~~~~i~----~~n~~~~~~~~~~~~~~~~~~~~~p~ivvv 534 (744)
- |..|...... +++ ...|..+|...+ +. +.-|... +=++|++-.+. +..-|.+ +.
T Consensus 93 t--V~~NVafGLk-~~~~~~~~ei~~rV~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARA---------L~~~P~v-LL 159 (352)
T COG3842 93 T--VEENVAFGLK-VRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARA---------LVPEPKV-LL 159 (352)
T ss_pred C--HHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHCCCHHHHHHCHHHHCHHHHHHHHHHHH---------HHCCCCH-HH
T ss_conf 5--8997553331-05778778999999999987485444442766648278999999997---------4218354-43
Q ss_pred HHH-HHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 445-68767531035899999999964201358999851654
Q gi|254780606|r 535 VDE-MADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 535 iDE-~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
.|| |..|-. +--+.+-..|-++-+.+||-.|+-|.-..
T Consensus 160 LDEPlSaLD~---kLR~~mr~Elk~lq~~~giT~i~VTHDqe 198 (352)
T COG3842 160 LDEPLSALDA---KLREQMRKELKELQRELGITFVYVTHDQE 198 (352)
T ss_pred HCCCCCCHHH---HHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 4274002318---99999999999999855972999978989
No 217
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=95.02 E-value=0.15 Score=29.63 Aligned_cols=153 Identities=16% Similarity=0.316 Sum_probs=75.9
Q ss_pred CEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCC------------------CEECCCCCCC
Q ss_conf 7321120114846997078753447999999999985680110799972342------------------1000125775
Q gi|254780606|r 403 ESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKM------------------LELSVYDGIP 464 (744)
Q Consensus 403 ~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~------------------~~~~~~~~~p 464 (744)
+-|-+++.+.--+-|-|-+|||||++|+. |..|+ .|+.=++++ |-+. .-|-.|.-.|
T Consensus 45 ~dVsl~I~~GEi~~ivG~SGsGKSTLlr~-i~gL~---~Pt~G~I~i-~G~di~~~~~~~l~~~rrr~igmVFQ~~aL~P 119 (400)
T PRK10070 45 KDASLAIEEGEIFVIMGLSGSGKSTMVRL-LNRLI---EPTRGQVLI-DGVDIAKISDAELREVRRKKIAMVFQSFALMP 119 (400)
T ss_pred ECCEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCCEEEE-CCEECCCCCHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 74076887999999999998469999999-97599---989818999-99999989978987651465599957974143
Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHH-H--------HHHHHHHHCCCCCCCCCCCCCCCEEEEE
Q ss_conf 200004444178768999999866769-99999807786799-9--------9988642026776665432338679998
Q gi|254780606|r 465 HLLTPVVTNPKKAVMALKWAVREMEER-YRKMSHLSVRNIKS-Y--------NERISTMYGEKPQGCGDDMRPMPYIVII 534 (744)
Q Consensus 465 h~~~~v~~~~~~~~~~l~~~~~em~~r-~~~~~~~~~~~i~~-~--------n~~~~~~~~~~~~~~~~~~~~~p~ivvv 534 (744)
|+- |..+.........|-..|..+| .+++...|..+... | .+|+.-.+. +..-|.|+ +
T Consensus 120 ~~T--V~eNi~~~l~~~~~~~~e~~~ra~e~L~~VgL~~~~~~yP~eLSGGqqQRVaiARA---------La~~P~iL-L 187 (400)
T PRK10070 120 HMT--VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARA---------LAINPDIL-L 187 (400)
T ss_pred CCC--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHH---------HHCCCCEE-E
T ss_conf 888--88878789998499989999999999997499024218934489999999999999---------86299999-9
Q ss_pred HHH-HHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 445-68767531035899999999964201358999851654
Q gi|254780606|r 535 VDE-MADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 535 iDE-~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
.|| |+.|-.....++.+ .|..+-+..|.-.|+-|.-.+
T Consensus 188 ~DEP~SALDp~~r~~i~~---~l~~L~~~~~~TiifVTHDl~ 226 (400)
T PRK10070 188 MDEAFSALDPLIRTEMQD---ELVKLQAKHQRTIVFISHDLD 226 (400)
T ss_pred EECCCCCCCHHHHHHHHH---HHHHHHHHHCCEEEEECCCHH
T ss_conf 708765459899999999---999999985999999899999
No 218
>PRK13542 consensus
Probab=95.01 E-value=0.29 Score=27.65 Aligned_cols=49 Identities=29% Similarity=0.460 Sum_probs=31.8
Q ss_pred EEECCCCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEE
Q ss_conf 42057887321120----114846997078753447999999999985680110799
Q gi|254780606|r 396 LGKTISGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMI 448 (744)
Q Consensus 396 ~g~~~~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~ 448 (744)
|.+...|++++-++ .+.=.+.|.|-.|+|||++|+. |++++ .|+.=++.
T Consensus 24 ls~~~g~~~il~~isl~i~~Gei~~liGpNGaGKTTLlk~-l~Gll---~p~~G~I~ 76 (224)
T PRK13542 24 LGFSRGGRAVFRGIDISLAPGDLLQVMGPNGSGKTSLLRV-LSGLM---PPAEGDLY 76 (224)
T ss_pred EEEEECCEEEEECCEEEECCCCEEEEECCCCCCHHHHHHH-HHCCC---CCCCEEEE
T ss_conf 6999999998846167875997999999999999999999-95797---88852899
No 219
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.01 E-value=0.11 Score=30.49 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=27.9
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC
Q ss_conf 14846997078753447999999999985680110799972
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD 451 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD 451 (744)
+.--.||+|.+|+|||+|-..++...+.+ -+.+-++..+
T Consensus 31 ~g~~~li~G~~G~GKt~~~~~f~~~~~~~--g~~~~~~~~e 69 (241)
T PRK06067 31 FGSLILIEGENDTGKSVLSQQFVWGALNQ--GKRGLAITTE 69 (241)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEEEC
T ss_conf 99089998079988799999999999867--9829999942
No 220
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.00 E-value=0.047 Score=33.09 Aligned_cols=146 Identities=19% Similarity=0.273 Sum_probs=69.9
Q ss_pred CHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE--ECCCC---------CEECCCCCCCCEEEEEEECHHH
Q ss_conf 201148469970787534479999999999856801107999--72342---------1000125775200004444178
Q gi|254780606|r 408 DLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM--VDPKM---------LELSVYDGIPHLLTPVVTNPKK 476 (744)
Q Consensus 408 dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l--iD~k~---------~~~~~~~~~ph~~~~v~~~~~~ 476 (744)
++.+.-.+-|-|..|||||++|| +|.+|+ .|+.=++++ .|... .-|-.+.-+||+- |..+
T Consensus 20 ~i~~Ge~~~ilGpSGsGKSTLl~-li~Gl~---~p~sG~I~i~G~di~~~~~~~r~ig~vfQ~~~L~p~lt--V~eN--- 90 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKSTLLN-LIAGFE---TPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLT--VEQN--- 90 (211)
T ss_pred EECCCCEEEEECCCCCHHHHHHH-HHHCCC---CCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCC--HHHH---
T ss_conf 98899899999999955999999-997699---98852999999999999988986799953886689994--9999---
Q ss_pred HHHHHH---HHHHHHHHH-HHHHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHH-HHHHH
Q ss_conf 768999---999866769-99999807786799---------99988642026776665432338679998445-68767
Q gi|254780606|r 477 AVMALK---WAVREMEER-YRKMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDE-MADLM 542 (744)
Q Consensus 477 ~~~~l~---~~~~em~~r-~~~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE-~a~l~ 542 (744)
..-.+. ....+..+| .+++...|..+... -.+|++-.+.-. .-|. +++.|| ++-|-
T Consensus 91 i~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~~~p~~LSGGqkQRvaiARAL~---------~~P~-ilLlDEPts~LD 160 (211)
T cd03298 91 VGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLV---------RDKP-VLLLDEPFAALD 160 (211)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHH---------CCCC-EEEECCCCCCCC
T ss_conf 875886468882999999999998769987872894558989999999999986---------5999-999718876559
Q ss_pred HHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 531035899999999964201358999851654
Q gi|254780606|r 543 MVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 543 ~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
..... ..+.-|..+-+..|+-+|+.|-.+.
T Consensus 161 ~~~~~---~l~~~l~~l~~~~~~Tvi~vTHd~~ 190 (211)
T cd03298 161 PALRA---EMLDLVLDLHAETKMTVLMVTHQPE 190 (211)
T ss_pred HHHHH---HHHHHHHHHHHHHCCEEEEECCCHH
T ss_conf 89999---9999999999974998999988999
No 221
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.99 E-value=0.084 Score=31.36 Aligned_cols=41 Identities=24% Similarity=0.419 Sum_probs=30.0
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE
Q ss_conf 211201148469970787534479999999999856801107999
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM 449 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l 449 (744)
+-+++.+.-.+-|.|..|||||++++ +|.+|+ .|+.=++++
T Consensus 28 vs~~i~~GE~v~iiG~sGsGKSTLl~-~i~Gl~---~p~~G~I~~ 68 (233)
T PRK11629 28 VSFSIGEGEMMAIVGSSGSGKSTLLH-LLGGLD---TPTSGDVIF 68 (233)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHH-HHHCCC---CCCCEEEEE
T ss_conf 28998899899999999940999999-996699---998639999
No 222
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.99 E-value=0.13 Score=30.04 Aligned_cols=189 Identities=16% Similarity=0.208 Sum_probs=82.5
Q ss_pred ECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECC-CCCCCCEEEEEEECHH---------
Q ss_conf 112011484699707875344799999999998568011079997234210001-2577520000444417---------
Q gi|254780606|r 406 IADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSV-YDGIPHLLTPVVTNPK--------- 475 (744)
Q Consensus 406 ~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~-~~~~ph~~~~v~~~~~--------- 475 (744)
-+++.+.=.+.|.|.+|||||++++. |.+|+ .-+-..+.+--+|.....-.. ...+-..++-|.-+++
T Consensus 27 sl~I~~Ge~~aiiG~nGsGKSTLl~~-l~GLl-~p~~G~I~~~g~~i~~~~~~~~~~~~r~~ig~VfQ~P~~ql~~~tV~ 104 (286)
T PRK13646 27 NTEFEQGKYYAIVGQTGSGKSTLIQN-INALL-KPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVE 104 (286)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHH-HHCCC-CCCCCEEEECCEECCCCCHHHHHHHHHHCEEEEEECCHHHHHHHHHH
T ss_conf 77986998999999999819999999-97078-88887599998987555746789998740899998840222077899
Q ss_pred -HHHHHHH---HHHHHHHHH-HHHHHHCCCC-CHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHH
Q ss_conf -8768999---999866769-9999980778-6799---------99988642026776665432338679998445687
Q gi|254780606|r 476 -KAVMALK---WAVREMEER-YRKMSHLSVR-NIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMAD 540 (744)
Q Consensus 476 -~~~~~l~---~~~~em~~r-~~~~~~~~~~-~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~ 540 (744)
..+..++ +-..|+.+| ...+...|.. ++.. -.+|++-... +.--|- +++.||=..
T Consensus 105 ~~i~fg~~~~g~~~~e~~~r~~~~l~~~gl~~~~~~~~p~~LSGGqkqRVaiA~a---------La~~P~-iLilDEPTa 174 (286)
T PRK13646 105 REMIFGPKNFKMNLDEAKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSI---------LAMNPD-IIVVDEPTA 174 (286)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHH---------HHCCCC-EEEEECCCC
T ss_conf 9998679777999999999999999984994757756943299999999999999---------851989-999838744
Q ss_pred -HHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCCCCE
Q ss_conf -6753103589999999996420135899985165444414678850563057203681110032676316885689846
Q gi|254780606|r 541 -LMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDM 619 (744)
Q Consensus 541 -l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~gd~ 619 (744)
|-.....++.. -|-++-+..|+-+|+.|...+ .+ +.+--||.+- .+.+ |+-++..+.++..-+.
T Consensus 175 gLDp~~~~~i~~---ll~~l~~~~g~TiI~iTHdm~--~v-----~~~adrv~vm----~~G~-Iv~~G~p~evf~~~~~ 239 (286)
T PRK13646 175 GLDPQSKRQVMR---LLKSLQTDENKAIILISHDMN--EV-----ARYADEVIVM----KEGS-IVSQTSPKELFKDKKK 239 (286)
T ss_pred CCCHHHHHHHHH---HHHHHHHHCCCEEEEECCCHH--HH-----HHHCCEEEEE----ECCE-EEEECCHHHHHCCHHH
T ss_conf 389899999999---999999953989999913899--99-----9969999999----8989-9997789999779657
Q ss_pred EE
Q ss_conf 86
Q gi|254780606|r 620 LY 621 (744)
Q Consensus 620 l~ 621 (744)
|.
T Consensus 240 l~ 241 (286)
T PRK13646 240 LA 241 (286)
T ss_pred HH
T ss_conf 98
No 223
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=94.98 E-value=0.023 Score=35.16 Aligned_cols=163 Identities=15% Similarity=0.218 Sum_probs=83.7
Q ss_pred CEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEE------CCC---------------CCEECCCC
Q ss_conf 732112011484699707875344799999999998568011079997------234---------------21000125
Q gi|254780606|r 403 ESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMV------DPK---------------MLELSVYD 461 (744)
Q Consensus 403 ~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~li------D~k---------------~~~~~~~~ 461 (744)
+-+-+++.+.--+-|-|-+|||||++|+.| .+|. .|+.=++++- |.. +.-|-.|.
T Consensus 41 ~dvsl~I~~GEi~~lvGpSGsGKSTLLr~i-~GL~---~pt~G~I~i~~~~~~~d~~~~~~~~lr~~R~~~IgmVFQ~~a 116 (382)
T TIGR03415 41 ANASLDIEEGEICVLMGLSGSGKSSLLRAV-NGLN---PVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred ECCEEEECCCCEEEEECCCCCHHHHHHHHH-HCCC---CCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCC
T ss_conf 651748879989999999973499999999-7599---988529999268642245659989987630576699963786
Q ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHHHHH------------HHHHHHCCCCCCCCCCCCCC
Q ss_conf 775200004444178768999999866769-99999807786799999------------88642026776665432338
Q gi|254780606|r 462 GIPHLLTPVVTNPKKAVMALKWAVREMEER-YRKMSHLSVRNIKSYNE------------RISTMYGEKPQGCGDDMRPM 528 (744)
Q Consensus 462 ~~ph~~~~v~~~~~~~~~~l~~~~~em~~r-~~~~~~~~~~~i~~~n~------------~~~~~~~~~~~~~~~~~~~~ 528 (744)
-+||+- |..+.........|-..|..+| .+++...|. .+|-. |+.-.+. +..-
T Consensus 117 L~P~~T--V~eNia~~L~~~g~~~~e~~~rv~e~L~~VgL---~~~~~~yP~eLSGGqqQRVaIARA---------La~~ 182 (382)
T TIGR03415 117 LMPWLT--VEENVAFGLEMQGMPEAERRKRVDEQLELVGL---AQWADKKPGELSGGMQQRVGLARA---------FAMD 182 (382)
T ss_pred CCCCCC--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC---HHHHHCCHHHCCHHHHHHHHHHHH---------HHCC
T ss_conf 465681--99999899988699999999999999873598---465547955579889999999999---------8638
Q ss_pred CEEEEEHHH-HHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEE
Q ss_conf 679998445-687675310358999999999642013589998516544441467885056305720
Q gi|254780606|r 529 PYIVIIVDE-MADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQ 594 (744)
Q Consensus 529 p~ivvviDE-~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~ 594 (744)
|-|+ +.|| |+.|--....++ ...|-++-+..|+-.|+-|-..+ ..+ .+.-||+.-
T Consensus 183 P~iL-LmDEPfsaLD~~~r~~l---~~~l~~L~~~~~~TiifVTHD~~-EA~------~laDRIaVM 238 (382)
T TIGR03415 183 ADIL-LMDEPFSALDPLIRTQL---QDELLELQAKLNKTIIFVSHDLD-EAL------KIGNRIAIM 238 (382)
T ss_pred CCEE-EEECCCCCCCHHHHHHH---HHHHHHHHHHHCCEEEEECCCHH-HHH------HHCCEEEEE
T ss_conf 9989-97088765599999999---99999999986998999879999-999------868989999
No 224
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=94.97 E-value=0.028 Score=34.60 Aligned_cols=42 Identities=21% Similarity=0.413 Sum_probs=29.8
Q ss_pred ECCCCCEEECCHHH-----CCCEEEEECCCCCHHHHHHHHHHHHHHHC
Q ss_conf 05788732112011-----48469970787534479999999999856
Q gi|254780606|r 398 KTISGESVIADLAN-----MPHILVAGTTGSGKSVAINTMIMSLLYRL 440 (744)
Q Consensus 398 ~~~~g~~~~~dl~~-----~PH~lvaG~TgsGKS~~l~~~i~sl~~~~ 440 (744)
....-.+-+.|.+. .+-.+|.|.||+|||.+|.+|-..| |..
T Consensus 11 ~~~y~~~~~~dfT~~~fasl~~f~i~G~tGAGKtsLldAI~yAL-YGk 57 (1063)
T TIGR00618 11 FTSYKGESVIDFTALGFASLKLFVICGKTGAGKTSLLDAITYAL-YGK 57 (1063)
T ss_pred CCCCCCCCEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH-CCC
T ss_conf 35345761010278872125736777889983545999999987-288
No 225
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.95 E-value=0.026 Score=34.80 Aligned_cols=217 Identities=14% Similarity=0.191 Sum_probs=96.2
Q ss_pred ECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEEC--------CCCCCC-CEEEEEEECHHH
Q ss_conf 11201148469970787534479999999999856801107999723421000--------125775-200004444178
Q gi|254780606|r 406 IADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELS--------VYDGIP-HLLTPVVTNPKK 476 (744)
Q Consensus 406 ~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~--------~~~~~p-h~~~~v~~~~~~ 476 (744)
-+++.+.-.+-+-|..|||||++++. |++|+ +-+.-++.+.-.|.+..... .|++.- +++...+. +.
T Consensus 24 s~~i~~Ge~~aliG~NGaGKSTLl~~-i~Gll-~p~~G~I~i~G~~i~~~~~~~~r~~ig~vfQ~p~~~l~~~tv~--~~ 99 (277)
T PRK13652 24 NFIAGRKQRIAVIGPNGAGKSTLFKH-FNGIL-KPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVE--QD 99 (277)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHH-HHCCC-CCCCEEEEECCEECCCCCHHHHHHCCEEEEECCCHHHCCCHHH--HH
T ss_conf 87998998999999999479999999-96699-9984699999999998999999713289987762221325599--99
Q ss_pred HHHHHHH---HHHHHHHH-HHHHHHCCCCCHHHHHHHHHHHHCCCCCCC---CCCCCCCCEEEEEHHHHHHHHHHCCHHH
Q ss_conf 7689999---99866769-999998077867999998864202677666---5432338679998445687675310358
Q gi|254780606|r 477 AVMALKW---AVREMEER-YRKMSHLSVRNIKSYNERISTMYGEKPQGC---GDDMRPMPYIVIIVDEMADLMMVAGKEI 549 (744)
Q Consensus 477 ~~~~l~~---~~~em~~r-~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~---~~~~~~~p~ivvviDE~a~l~~~~~~~~ 549 (744)
....+.. -..++..| .+.+...|. ..|..+....-+...+.. ..-+-.-|. +++.||=..-+ .....
T Consensus 100 i~~~~~~~g~~~~~~~~~v~~~l~~~gL---~~~~~~~~~~LSGGqkqRvaiA~aL~~~P~-lLlLDEPtagL--Dp~~~ 173 (277)
T PRK13652 100 IAFGPINLGLDEETVAHRVDEALHMLGL---EELRDRVPHHLSGGEKKRVAIAGILAMEPQ-VLVLDEPTAGL--DPQGV 173 (277)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCC---HHHHHCCHHHCCHHHHHHHHHHHHHHHCCC-EEEECCCCCCC--CHHHH
T ss_conf 9988988698999999999999986799---788718954489999999999999982999-99983974548--99999
Q ss_pred HHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCCCCEEEECCCCCEE
Q ss_conf 99999999964201358999851654444146788505630572036811100326763168856898468646898438
Q gi|254780606|r 550 EGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDMLYMSGGGRIQ 629 (744)
Q Consensus 550 e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~gd~l~~~~~~~~~ 629 (744)
...+.-|-++.+..|+-+|+.|.+-+ .+ ..+-.||.+= .+-++|.+..- +.++.+=|.|...+
T Consensus 174 ~~i~~~l~~l~~~~g~Tii~vtHdl~--~v-----~~~aDri~vl----~~G~ii~~Gtp-~ev~~~p~~l~~~~----- 236 (277)
T PRK13652 174 KELFDFLNALPETYGMTVIFSTHQVE--LV-----AEMADYIYVM----EKGEIVGYGTV-QEIFLQPDLLARAR----- 236 (277)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCHH--HH-----HHHCCEEEEE----ECCEEEEECCH-HHHHHCHHHHHHCC-----
T ss_conf 99999999999850989999914899--99-----9979999999----89999998789-99974989999779-----
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99934389889999999998408875
Q gi|254780606|r 630 RVHGPLVSDIEIEKVVQHLKKQGCPE 655 (744)
Q Consensus 630 r~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (744)
+....+-++...++++|-+-
T Consensus 237 ------l~~p~~~~l~~~L~~~g~~i 256 (277)
T PRK13652 237 ------LDLPSLPKLIQSLRAQGIAI 256 (277)
T ss_pred ------CCCCHHHHHHHHHHHCCCCC
T ss_conf ------99983999999999759999
No 226
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=94.95 E-value=0.077 Score=31.61 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=23.9
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 1484699707875344799999999998568011079997234
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK 453 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k 453 (744)
+.=.++|.+.||||||..---.+...+..+.....-++++.-|
T Consensus 13 ~g~~~iv~~pTGsGKT~~~~~~~l~~~~~~~~~~~~v~l~Pt~ 55 (167)
T pfam00270 13 EGKDVLVQAPTGSGKTLAFLLPALQALLKNPDGPQALVLAPTR 55 (167)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 6997899889997589999999999987477898799990608
No 227
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.94 E-value=0.086 Score=31.28 Aligned_cols=123 Identities=22% Similarity=0.314 Sum_probs=60.5
Q ss_pred CEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC--CCCCEECCCCCCCCEEEEEEECHHHHHHH
Q ss_conf 7321120114846997078753447999999999985680110799972--34210001257752000044441787689
Q gi|254780606|r 403 ESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD--PKMLELSVYDGIPHLLTPVVTNPKKAVMA 480 (744)
Q Consensus 403 ~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD--~k~~~~~~~~~~ph~~~~v~~~~~~~~~~ 480 (744)
+.+-+++.+.-.+.|.|..|+|||++++. |++++ .|+.=++.+-+ .+......+.. + +. .+.
T Consensus 16 ~~i~~~i~~Ge~~~i~G~nGaGKSTLl~~-l~gl~---~~~~G~i~~~g~~~~~~~~~~~~~--~-i~-~v~-------- 79 (157)
T cd00267 16 DNVSLTLKAGEIVALVGPNGSGKSTLLRA-IAGLL---KPTSGEILIDGKDIAKLPLEELRR--R-IG-YVP-------- 79 (157)
T ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHH-HHCCC---CCCCCEEEECCEECCCCCHHHHHH--C-CC-CCC--------
T ss_conf 21178987997999987889998999999-95884---799628999999999799999994--0-60-876--------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHH-HHHHCCHHHHHHHHHHHHH
Q ss_conf 999998667699999980778679999988642026776665432338679998445687-6753103589999999996
Q gi|254780606|r 481 LKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMAD-LMMVAGKEIEGAIQRLAQM 559 (744)
Q Consensus 481 l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~-l~~~~~~~~e~~~~~la~~ 559 (744)
-+..-|.+|..+-... . .-|. +++.||-.. |-.....++...|.++.+.
T Consensus 80 --QLSgGqkqrv~iA~al-----------~----------------~~p~-ililDEPtsgLD~~~~~~l~~~i~~l~~~ 129 (157)
T cd00267 80 --QLSGGQRQRVALARAL-----------L----------------LNPD-LLLLDEPTSGLDPASRERLLELLRELAEE 129 (157)
T ss_pred --CCCHHHHHHHHHHHHH-----------H----------------CCCC-EEEEECCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf --6886999999999999-----------7----------------0999-99996987668999999999999999968
Q ss_pred HHCCEEEEEEEECCCC
Q ss_conf 4201358999851654
Q gi|254780606|r 560 ARAAGIHLIMATQRPS 575 (744)
Q Consensus 560 ~ra~GihlilatQrp~ 575 (744)
|.-+|+.|..++
T Consensus 130 ----g~tii~vtH~~~ 141 (157)
T cd00267 130 ----GRTVIIVTHDPE 141 (157)
T ss_pred ----CCEEEEEECCHH
T ss_conf ----999999908999
No 228
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.93 E-value=0.033 Score=34.17 Aligned_cols=204 Identities=18% Similarity=0.206 Sum_probs=99.2
Q ss_pred CHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHH--EEEEEECCC---CCEEC--------CCCCCC--CEEEEEEE
Q ss_conf 2011484699707875344799999999998568011--079997234---21000--------125775--20000444
Q gi|254780606|r 408 DLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDE--CRMIMVDPK---MLELS--------VYDGIP--HLLTPVVT 472 (744)
Q Consensus 408 dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~--~~~~liD~k---~~~~~--------~~~~~p--h~~~~v~~ 472 (744)
.+.+.-.+.|-|.+|||||++++. |.+|+ .|+. --.+.+|-+ ...+. .|++ | .++.. |
T Consensus 30 ~I~~Ge~vaiiG~nGsGKSTL~~~-l~Gll---~P~~~~~G~i~~~g~~i~~~~~~~lr~~vg~VfQ~-P~~q~~~~--t 102 (283)
T PRK13640 30 SIPRGSWTALIGHNGSGKSTISKL-INGLL---LPDDNPKSKITVDGITLTAKTVWDIREKVGIVFQN-PDNQFVGA--T 102 (283)
T ss_pred EECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCCCEEEEEECCEECCCCCHHHHHHCEEEEEEC-CCCCCCCC--C
T ss_conf 998999999999999879999999-96403---78888617999999999967988996261899868-87618878--2
Q ss_pred CHHHHHHHHH---HHHHHHHHHHH-HHHHCCCCCHHHH---------HHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHH
Q ss_conf 4178768999---99986676999-9998077867999---------998864202677666543233867999844568
Q gi|254780606|r 473 NPKKAVMALK---WAVREMEERYR-KMSHLSVRNIKSY---------NERISTMYGEKPQGCGDDMRPMPYIVIIVDEMA 539 (744)
Q Consensus 473 ~~~~~~~~l~---~~~~em~~r~~-~~~~~~~~~i~~~---------n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a 539 (744)
=.+..+-.+. .-..++.+|.+ .+...|..+..+- .+|++-... +.--|- +++.||=.
T Consensus 103 V~e~iafgl~n~~~~~~e~~~~v~~~l~~vgl~~~~~~~p~~LSGGqkQRvaiA~a---------La~~P~-iLllDEPT 172 (283)
T PRK13640 103 VGDDVAFGLENRGVPRPEMIKIVADVLSDVGMLDYIDSEPANLSGGQKQRVAIAGI---------LAVEPQ-IIILDEST 172 (283)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHH---------HHCCCC-EEEECCCC
T ss_conf 99999845753799999999999999987799777647922299999999999999---------971999-99976874
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCCCCE
Q ss_conf 76753103589999999996420135899985165444414678850563057203681110032676316885689846
Q gi|254780606|r 540 DLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDM 619 (744)
Q Consensus 540 ~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~gd~ 619 (744)
.-+. ....+..+.-|-++.+..|+-+|+.|.+.+ . +. +--||.+=- +-|+|.+. -.+.++.+-|+
T Consensus 173 s~LD--~~~~~~i~~~l~~l~~e~g~TvI~itHd~~--~----a~--~aDrv~vm~----~G~iv~~G-~p~evf~~~~~ 237 (283)
T PRK13640 173 SMLD--PAGKEQILKLIRKLMKDNNLTIISITHDID--E----AA--GADQVLVLD----DGKLLAQG-SPVEIFPKVEL 237 (283)
T ss_pred CCCC--HHHHHHHHHHHHHHHHCCCCEEEEEEECHH--H----HH--HCCEEEEEE----CCEEEEEC-CHHHHHCCHHH
T ss_conf 5489--899999999999999706989999978878--9----97--099899999----99999977-78998579999
Q ss_pred EEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
Q ss_conf 86468984389993438988999999999840887
Q gi|254780606|r 620 LYMSGGGRIQRVHGPLVSDIEIEKVVQHLKKQGCP 654 (744)
Q Consensus 620 l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 654 (744)
|-. +.+....+-++...++.+|-.
T Consensus 238 l~~-----------~~l~~P~~~~l~~~L~~~g~~ 261 (283)
T PRK13640 238 LKR-----------IGLDIPFVYKLKLKLKEKGIS 261 (283)
T ss_pred HHH-----------CCCCCCHHHHHHHHHHHCCCC
T ss_conf 997-----------799999699999999974999
No 229
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=94.92 E-value=0.017 Score=36.17 Aligned_cols=51 Identities=20% Similarity=0.349 Sum_probs=31.7
Q ss_pred CCCEEEEEEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEE
Q ss_conf 78368984205788732112011484699707875344799999999998568011079997
Q gi|254780606|r 389 KANLALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMV 450 (744)
Q Consensus 389 ~~~l~~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~li 450 (744)
...||++-+ |-+.+...=-+.+.|.+|||||++|++|- -+|.||-=++..=
T Consensus 18 G~~LpVl~~-------v~l~V~aGEcv~L~G~SGaGKSTlLk~lY----aNYlp~~G~i~~~ 68 (224)
T TIGR02324 18 GVRLPVLKN-------VSLTVNAGECVALSGPSGAGKSTLLKSLY----ANYLPDSGRILVR 68 (224)
T ss_pred CEEEEECCC-------CEEEEECCCEEEEECCCCCCHHHHHHHHH----HCCCCCCCEEEEE
T ss_conf 865000067-------43787367358853688876789999766----3047468677776
No 230
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.91 E-value=0.023 Score=35.22 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=22.8
Q ss_pred CCHHHCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 1201148469970787534479999999999
Q gi|254780606|r 407 ADLANMPHILVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 407 ~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
+.+.+.=.+-|.|.+|||||++++. |++|+
T Consensus 35 ~~i~~Ge~vaIvG~sGsGKSTL~~l-l~gl~ 64 (226)
T cd03248 35 FTLHPGEVTALVGPSGSGKSTVVAL-LENFY 64 (226)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHH-HHCCC
T ss_conf 9982999999999999849999999-96454
No 231
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR); InterPro: IPR005291 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are integral membrane proteins and they are involved in the transport of chloride ions. Many of these proteins are the cystis fibrosis transmembrane conductor regulators (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.; GO: 0005254 chloride channel activity, 0006811 ion transport, 0016020 membrane.
Probab=94.89 E-value=0.018 Score=35.89 Aligned_cols=190 Identities=23% Similarity=0.368 Sum_probs=106.7
Q ss_pred EEEEECCCCCEEECCHH----HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCC----CCCC
Q ss_conf 98420578873211201----148469970787534479999999999856801107999723421000125----7752
Q gi|254780606|r 394 LCLGKTISGESVIADLA----NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYD----GIPH 465 (744)
Q Consensus 394 ~~~g~~~~g~~~~~dl~----~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~----~~ph 465 (744)
+-.-.+.+|+.|.-||+ -.=.+=+-|.||||||++|-+++. +.++-.++.+--|-..-+.|-.++ -+|+
T Consensus 1264 LT~KYT~~G~avL~dlSFsv~~GQ~VGlLGRTGsGKSTLLSAlLR---L~~T~GEI~IDGvSW~SvtLQ~WRKAFGViPQ 1340 (1534)
T TIGR01271 1264 LTAKYTEAGRAVLQDLSFSVEAGQRVGLLGRTGSGKSTLLSALLR---LLSTEGEIQIDGVSWNSVTLQKWRKAFGVIPQ 1340 (1534)
T ss_pred CEEEECCCCHHHHHHCCEEECCCCEEEEEECCCCCHHHHHHHHHH---HCCCCCCEEECCEEECCCCHHHHHHHCCCCCC
T ss_conf 402321020555641341443883577530268767899999999---60779816762335052122003444131563
Q ss_pred EEEEEEEC--HHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHH
Q ss_conf 00004444--178768999999866769999998077867-999998864202677666543233867999844568767
Q gi|254780606|r 466 LLTPVVTN--PKKAVMALKWAVREMEERYRKMSHLSVRNI-KSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLM 542 (744)
Q Consensus 466 ~~~~v~~~--~~~~~~~l~~~~~em~~r~~~~~~~~~~~i-~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~ 542 (744)
=+ .|.+- .+...=--+|--+|+ -+.-.+.|.|.+ +.|-. +|- ++.+|=.--|.
T Consensus 1341 Kv-Fi~sGTFR~NLDPy~~~SD~E~---WkVaeEVGLkSvIEQFPd------------------KLd--F~L~DGGyvLS 1396 (1534)
T TIGR01271 1341 KV-FIFSGTFRKNLDPYEQWSDEEI---WKVAEEVGLKSVIEQFPD------------------KLD--FVLVDGGYVLS 1396 (1534)
T ss_pred EE-EEECCCCCCCCCHHHHCCHHHH---HHHHHHCCCEEEEECCCC------------------CCC--EEEECCCEEEE
T ss_conf 47-8831551136881342260356---666543154311000888------------------412--48862867831
Q ss_pred HHCCHHHHHHHHH-HHHHHHCCEEEEEEEECCCCCC-------CCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHC
Q ss_conf 5310358999999-9996420135899985165444-------4146788505630572036811100326763168856
Q gi|254780606|r 543 MVAGKEIEGAIQR-LAQMARAAGIHLIMATQRPSVD-------VITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLL 614 (744)
Q Consensus 543 ~~~~~~~e~~~~~-la~~~ra~GihlilatQrp~~~-------vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~ 614 (744)
..+ |... .++| |-.||| ||----|++- ||...+|..| .|-.+||-|.--|.||
T Consensus 1397 ~GH-KQLM-CLARSiLSKAk------ILLLDEPsA~LDPvT~Qi~RkTLK~~F-----------s~CTVILsEHRvEalL 1457 (1534)
T TIGR01271 1397 NGH-KQLM-CLARSILSKAK------ILLLDEPSAHLDPVTLQIIRKTLKQSF-----------SNCTVILSEHRVEALL 1457 (1534)
T ss_pred CCH-HHHH-HHHHHHHHHHH------HHHCCCCCHHCCHHHHHHHHHHHHHHH-----------CCCEEEEECCCHHHHH
T ss_conf 641-6899-99988886533------222148710103168999999985322-----------1574875112222466
Q ss_pred CCCCEEEECCCCCEEE
Q ss_conf 8984686468984389
Q gi|254780606|r 615 GRGDMLYMSGGGRIQR 630 (744)
Q Consensus 615 g~gd~l~~~~~~~~~r 630 (744)
---.+|..-+. ...|
T Consensus 1458 ECQ~FL~IE~~-~~k~ 1472 (1534)
T TIGR01271 1458 ECQQFLVIEGS-SVKQ 1472 (1534)
T ss_pred HHCCEEEEECC-CCHH
T ss_conf 40310144256-4303
No 232
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=94.88 E-value=0.31 Score=27.43 Aligned_cols=126 Identities=21% Similarity=0.338 Sum_probs=68.8
Q ss_pred EEEEEECCCCCE------EECCH-HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCC
Q ss_conf 898420578873------21120-11484699707875344799999999998568011079997234210001257752
Q gi|254780606|r 393 ALCLGKTISGES------VIADL-ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPH 465 (744)
Q Consensus 393 ~~~~g~~~~g~~------~~~dl-~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph 465 (744)
-++...+.+|+- +.+.+ .+.+=.||.|..|.|||..+.-||..|.-.. +. .+-|.
T Consensus 216 ~f~~~~~~~~~~~~D~Q~~a~~~aL~~~f~li~GGPGTGKTTTv~~LL~al~~~~-~~-----------------~G~~~ 277 (753)
T TIGR01447 216 LFPLLNEQNGRKVTDWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALIKQS-PK-----------------QGKPR 277 (753)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHH-HH-----------------CCCCC
T ss_conf 8542104544311379999999986087689987988977899999999999989-86-----------------49974
Q ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHHHH---------HHHC--CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEE
Q ss_conf 00004444178768999999866769999---------9980--778679999988642026776665432338679998
Q gi|254780606|r 466 LLTPVVTNPKKAVMALKWAVREMEERYRK---------MSHL--SVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVII 534 (744)
Q Consensus 466 ~~~~v~~~~~~~~~~l~~~~~em~~r~~~---------~~~~--~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvv 534 (744)
+...++--..||+.-|......-..+... +... .+..|+. ...........-..+.-.+||+=|+|
T Consensus 278 ~~I~l~APTGKAa~RL~esl~~~~~~L~~~~~aid~~~~~~~~~~~~TiHr---LLG~~~I~~~~fr~h~~N~L~~DVLv 354 (753)
T TIGR01447 278 LRIALAAPTGKAAARLAESLRKAVKKLAAENMAIDEDLIAALPSEATTIHR---LLGIKPIDTKRFRHHERNPLPLDVLV 354 (753)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHH---HHCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 047886684479999999999886322342366587985487204568888---61661478767767777889855278
Q ss_pred HHHHH
Q ss_conf 44568
Q gi|254780606|r 535 VDEMA 539 (744)
Q Consensus 535 iDE~a 539 (744)
|||-.
T Consensus 355 vDEaS 359 (753)
T TIGR01447 355 VDEAS 359 (753)
T ss_pred ECCCH
T ss_conf 70600
No 233
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.88 E-value=0.31 Score=27.45 Aligned_cols=68 Identities=21% Similarity=0.253 Sum_probs=35.3
Q ss_pred EEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEE-CCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCC
Q ss_conf 799984456876753103589999999996420135899985-16544441467885056305720368111003267
Q gi|254780606|r 530 YIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMAT-QRPSVDVITGTIKANFPIRISFQVTSKIDSRTILG 606 (744)
Q Consensus 530 ~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihlilat-Qrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~ 606 (744)
..|++|||..-|.. .-.+.+...--.|. |-||.|| ..|+-.+... |..-+ ..+.|+--+..|=..||.
T Consensus 93 ~tilfiDEIHRfnK----~QQD~LLp~vE~g~---iiLIgATTENP~f~in~a-LlSRc-~vf~l~~L~~~di~~iL~ 161 (417)
T PRK13342 93 RTILFIDEIHRFNK----AQQDALLPHVEDGT---ITLIGATTENPSFEVNPA-LLSRA-QVFELKPLSEEDLEQLLK 161 (417)
T ss_pred CEEEEEECHHHCCH----HHHHHHHHHHHCCC---EEEEEECCCCCHHHCCHH-HHHHH-HHEECCCCCHHHHHHHHH
T ss_conf 65999978200588----99999987511265---699974157922534898-98565-700205899999999999
No 234
>COG3596 Predicted GTPase [General function prediction only]
Probab=94.88 E-value=0.018 Score=35.90 Aligned_cols=24 Identities=38% Similarity=0.656 Sum_probs=19.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 469970787534479999999999
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
.+|+.|+||+|||.++|++..+..
T Consensus 41 nvLi~G~TG~GKSSliNALF~~~~ 64 (296)
T COG3596 41 NVLLMGATGAGKSSLINALFQGEV 64 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 589743777768899999970267
No 235
>PRK08233 hypothetical protein; Provisional
Probab=94.88 E-value=0.021 Score=35.42 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHH
Q ss_conf 6997078753447999999999
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSL 436 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl 436 (744)
+.|||.||||||.+.+.|+-.|
T Consensus 6 IgIaGgSgSGKTtla~~l~~~l 27 (182)
T PRK08233 6 ITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9996888678999999999974
No 236
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=94.87 E-value=0.11 Score=30.56 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=34.2
Q ss_pred CCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECC
Q ss_conf 887321120----11484699707875344799999999998568011079997234210001
Q gi|254780606|r 401 SGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSV 459 (744)
Q Consensus 401 ~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~ 459 (744)
..+++.-|+ .+.=.+.|-|.||||||++++ +|+.+ |.....++.+--+|-+...+..
T Consensus 353 ~~~~vL~~isl~I~~G~~vaiVG~SGsGKSTL~~-LL~gl-y~p~~G~I~idg~di~~~~~~~ 413 (581)
T PRK11176 353 KEVPALRNINFKIPAGKTVALVGRSGSGKSTIAN-LLTRF-YDIDEGEILLDGHDLRDYTLAS 413 (581)
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHH-HHHHH-CCCCCCEEEECCEEHHHCCHHH
T ss_conf 9862010663357999443122899986789999-99853-6678874878988512147666
No 237
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.85 E-value=0.096 Score=30.96 Aligned_cols=62 Identities=15% Similarity=0.210 Sum_probs=36.6
Q ss_pred EEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEE--EECCCCCEECC-------CCCCCCEEEE
Q ss_conf 321120114846997078753447999999999985680110799--97234210001-------2577520000
Q gi|254780606|r 404 SVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMI--MVDPKMLELSV-------YDGIPHLLTP 469 (744)
Q Consensus 404 ~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~--liD~k~~~~~~-------~~~~ph~~~~ 469 (744)
.+-+.+.+.-++-|.|.||||||++++-+ +. -+.|++=++. -+|.+...+.. -..-+|++..
T Consensus 359 ~isl~i~~Ge~vaiVG~SGsGKSTL~~LL-~r---~ydp~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~ 429 (575)
T PRK11160 359 GLSLQIKAGEKVALLGRTGCGKSTLLQLL-TR---AWDPQQGEILLNGQPIASYSEAALRQAISVVSQRVHLFSG 429 (575)
T ss_pred CEEEEECCCCEEEEECCCCCCHHHHHHHH-HC---CCCCCCCEEEECCEECCCCCHHHHHHHHCCCCCCCCCCCC
T ss_conf 71589769988999889997599999998-62---3678998899998975638889998761356777602588
No 238
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB; InterPro: IPR013363 Proteins in this entry are the DotB component of Dot/Icm secretion systems, as found in the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This family is most closely related to the TraJ proteins of plasmid transfer (IPR013364 from INTERPRO), rather than to proteins of other type IV secretion systems..
Probab=94.82 E-value=0.027 Score=34.71 Aligned_cols=126 Identities=24% Similarity=0.355 Sum_probs=66.6
Q ss_pred CCCCEEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCCCCEEEHHHHHCCH
Q ss_conf 35513898676489258999754888639999859999998714776327751898345442688888707658751281
Q gi|254780606|r 304 FGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVIGLADDIARSMSSLSARVAVIPKRNAIGIELPNETRETVYLRQIIESR 383 (744)
Q Consensus 304 ~~~~~~~~~~~~gp~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~pg~~~~~~~~p~~~~~~v~~~~~~~~~ 383 (744)
||-++..-=..---.=|.||++|..++|..--.| +.++ -+-|...|-|.+- .+=. .
T Consensus 58 yGPn~ttq~~~G~didthye~rPnr~~r~ryr~n----------~t~C---~v~Gh~~iqit~r----------~iP~-~ 113 (358)
T TIGR02524 58 YGPNATTQLLRGKDIDTHYEIRPNRNVRYRYRVN----------ATAC---LVEGHEAIQITLR----------AIPA-E 113 (358)
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEE----------CEEE---EEECCCCEEEEEE----------ECCC-C
T ss_conf 1875211232045222100004677750467870----------4044---5205550477876----------4279-8
Q ss_pred HHCCCCCCEEEEEEECCCCCEEECCHH-HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCC
Q ss_conf 211467836898420578873211201-1484699707875344799999999998568011079997234210001257
Q gi|254780606|r 384 SFSHSKANLALCLGKTISGESVIADLA-NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDG 462 (744)
Q Consensus 384 ~~~~~~~~l~~~~g~~~~g~~~~~dl~-~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~ 462 (744)
...-++..||-.+ +.-++ ..-=+.|.|+||||||.+|-++|..|+- .+|.-+-+|.--.-.|| .|+.
T Consensus 114 PP~ls~~~lP~~i---------~~aiaPqeG~v~~tGatGsGkstlla~iirel~e--~~ds~rk~ltye~Pie~-vyd~ 181 (358)
T TIGR02524 114 PPKLSKLDLPDAI---------VEAIAPQEGVVYVTGATGSGKSTLLAAIIRELIE--ASDSNRKVLTYEAPIEY-VYDE 181 (358)
T ss_pred CCCCCCCCCHHHH---------HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--CCCCCCEEEEECCCHHH-HHHC
T ss_conf 8744311341799---------9851788866998626776368899999999860--67656414642263233-2211
Q ss_pred CCC
Q ss_conf 752
Q gi|254780606|r 463 IPH 465 (744)
Q Consensus 463 ~ph 465 (744)
+--
T Consensus 182 ~~t 184 (358)
T TIGR02524 182 LET 184 (358)
T ss_pred CCC
T ss_conf 010
No 239
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.81 E-value=0.047 Score=33.05 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=32.0
Q ss_pred ECCCCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCE
Q ss_conf 057887321120----11484699707875344799999999998568011079997234210
Q gi|254780606|r 398 KTISGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLE 456 (744)
Q Consensus 398 ~~~~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~ 456 (744)
..-++++++-|+ .+.-.+-|.|.+|||||++++. |+++ |...--.+.+--.|.....
T Consensus 10 Y~~~~~~~L~~is~~i~~G~~vaivG~sGsGKSTll~l-l~gl-~~p~~G~I~i~g~di~~~~ 70 (237)
T cd03252 10 YKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKL-IQRF-YVPENGRVLVDGHDLALAD 70 (237)
T ss_pred ECCCCCCCEECCEEEECCCCEEEEECCCCCHHHHHHHH-HHCC-CCCCCCEEEECCEECCCCC
T ss_conf 79899572515089987999999999999859999999-9677-6579878999999955189
No 240
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.79 E-value=0.034 Score=34.03 Aligned_cols=207 Identities=19% Similarity=0.268 Sum_probs=100.6
Q ss_pred ECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC---CCEEC--------CCCCCCCEEEEEEECH
Q ss_conf 112011484699707875344799999999998568011079997234---21000--------1257752000044441
Q gi|254780606|r 406 IADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK---MLELS--------VYDGIPHLLTPVVTNP 474 (744)
Q Consensus 406 ~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k---~~~~~--------~~~~~ph~~~~v~~~~ 474 (744)
-+++.+.-.+.|-|..|||||++++. |.+|+ .|+.=++ ++|-+ ..... .|++.-+.+. -.|-.
T Consensus 24 sl~i~~GE~vaivG~nGsGKSTL~~~-l~Gll---~p~~G~I-~i~G~~i~~~~~~~lr~~ig~VfQ~p~~~~~-~~tV~ 97 (276)
T PRK13650 24 SFHVKQGEWLSIIGHNGSGKSTTVRL-IDGLL---EAESGSI-IIDGDLLTEENVWEIRHKIGMVFQNPDNQFV-GATVE 97 (276)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCEEE-EECCEECCCCCHHHHHHCEEEEEECCCHHCC-CCCHH
T ss_conf 87998998999999999879999999-97388---9886089-9999999867768876414699767201056-36399
Q ss_pred HHHHHHHHH---HHHHHHHHHH-HHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHH
Q ss_conf 787689999---9986676999-999807786799---------999886420267766654323386799984456876
Q gi|254780606|r 475 KKAVMALKW---AVREMEERYR-KMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADL 541 (744)
Q Consensus 475 ~~~~~~l~~---~~~em~~r~~-~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l 541 (744)
+.....+.. -..++.+|.. .+...|..+... -.+|++-.+. +..-|. +++.||=---
T Consensus 98 e~i~fgl~~~g~~~~e~~~rv~~~l~~~gl~~~~~r~p~~LSGGQrQRvaIA~a---------La~~P~-lLilDEPTs~ 167 (276)
T PRK13650 98 DDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGA---------VAMRPK-IIILDEATSM 167 (276)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHH---------HHCCCC-EEEEECCCCC
T ss_conf 999879987799999999999999987799245538903389999999999999---------973999-9998388665
Q ss_pred HHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCCCCEEE
Q ss_conf 75310358999999999642013589998516544441467885056305720368111003267631688568984686
Q gi|254780606|r 542 MMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDMLY 621 (744)
Q Consensus 542 ~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~gd~l~ 621 (744)
+. ..-....+..|.++.+..|+-+|+.|.+.+ . + + +..||.+-- +-| |+..+-.+.++.+-|.|.
T Consensus 168 LD--~~~~~~i~~~l~~l~~~~g~Tvi~iTHdl~--~----v-~-~aDrvivm~----~G~-Iv~~Gtp~evf~~p~~l~ 232 (276)
T PRK13650 168 LD--PEGRLELIKTIKNIRDDYQLTVISITHDLD--E----V-A-LSDRVLVMK----DGQ-VESTSTPRELFSRGDELL 232 (276)
T ss_pred CC--HHHHHHHHHHHHHHHHHCCCEEEEEEECHH--H----H-H-CCCEEEEEE----CCE-EEEECCHHHHHCCHHHHH
T ss_conf 89--999999999999999842989999957789--9----9-6-099999998----999-999768999974989999
Q ss_pred ECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
Q ss_conf 468984389993438988999999999840887
Q gi|254780606|r 622 MSGGGRIQRVHGPLVSDIEIEKVVQHLKKQGCP 654 (744)
Q Consensus 622 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 654 (744)
..+=. ...+-+++..++.+|..
T Consensus 233 ~~~l~-----------~P~~~~~~~~L~~~g~~ 254 (276)
T PRK13650 233 QLGLD-----------IPFTTSLVQMLQEEGYD 254 (276)
T ss_pred HCCCC-----------CCHHHHHHHHHHHCCCC
T ss_conf 77999-----------98699999999965999
No 241
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.74 E-value=0.3 Score=27.52 Aligned_cols=191 Identities=14% Similarity=0.231 Sum_probs=109.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCC----EECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHH
Q ss_conf 469970787534479999999999856801107999723421----0001257752000044441787689999998667
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKML----ELSVYDGIPHLLTPVVTNPKKAVMALKWAVREME 489 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~----~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~ 489 (744)
-+-.-|-||.|||+-|--|-.-..++|..+.|-||-.|--++ -|..|-.|-.+-..++.|..+...+|.. +.
T Consensus 350 v~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~~~l~~~l~~----l~ 425 (557)
T PRK12727 350 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER----LR 425 (557)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHH----HC
T ss_conf 47874377767311799999999997399818999726640879999999999839757982899999999998----36
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEE
Q ss_conf 69999998077867999998864202677666543233867999844568767531035899999999964201358999
Q gi|254780606|r 490 ERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIM 569 (744)
Q Consensus 490 ~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihlil 569 (744)
. +-+|.||-.. |..........+..|. -++..-.||+|
T Consensus 426 ~---------------------------------------~~lvliDTaG--~~~rd~~~~~~~~~l~-~~~~~~~~Lvl 463 (557)
T PRK12727 426 D---------------------------------------YKLVLIDTAG--MGQRDRALAAQLNWLR-AARQVTSLLVL 463 (557)
T ss_pred C---------------------------------------CCEEEEECCC--CCCCCHHHHHHHHHHH-CCCCCCEEEEE
T ss_conf 9---------------------------------------9989994999--8846999999999875-14776359999
Q ss_pred EECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCCCCEEEECCCCC-E---EEEEECCCCHHHHHHHH
Q ss_conf 8516544441467885056305720368111003267631688568984686468984-3---89993438988999999
Q gi|254780606|r 570 ATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDMLYMSGGGR-I---QRVHGPLVSDIEIEKVV 645 (744)
Q Consensus 570 atQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~gd~l~~~~~~~-~---~r~~~~~~~~~~~~~~~ 645 (744)
..--=. +++...++.--...+.-.+-++.|--.-||.-=---+-.+=-..|+..|-+ | .+..+.|+ |+|..
T Consensus 464 ~a~~~~-~~l~~~~~~~~~~~~~~~i~TKlDE~~~~G~~l~~~~~~~lp~~y~t~GQ~VPeDi~~a~~~~L----v~Ra~ 538 (557)
T PRK12727 464 PANAHF-SDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASL----VLRLE 538 (557)
T ss_pred ECCCCH-HHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCHHHCCHHHH----HHHHH
T ss_conf 688998-9999999985379987489961436787039999999968982897589828523643899999----99999
Q ss_pred HHHHHCCCCC
Q ss_conf 9998408875
Q gi|254780606|r 646 QHLKKQGCPE 655 (744)
Q Consensus 646 ~~~~~~~~~~ 655 (744)
+-|+.-.+|-
T Consensus 539 ~L~~~~~~~~ 548 (557)
T PRK12727 539 DLRRAADKPC 548 (557)
T ss_pred HHHHHCCCCC
T ss_conf 9764115899
No 242
>KOG0733 consensus
Probab=94.74 E-value=0.13 Score=30.01 Aligned_cols=13 Identities=46% Similarity=0.779 Sum_probs=7.3
Q ss_pred CEEEEEEEECCCC
Q ss_conf 1358999851654
Q gi|254780606|r 563 AGIHLIMATQRPS 575 (744)
Q Consensus 563 ~GihlilatQrp~ 575 (744)
.|+++|-||.||+
T Consensus 646 ~gV~viaATNRPD 658 (802)
T KOG0733 646 RGVYVIAATNRPD 658 (802)
T ss_pred CCEEEEEECCCCC
T ss_conf 4259995068976
No 243
>pfam04157 EAP30 EAP30/Vps36 family. This family includes EAP30 as well as the Vps36 protein. Vps36 is involved in Golgi to endosome trafficking. EAP30 is a subunit of the ELL complex. The ELL is an 80-kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity.
Probab=94.73 E-value=0.086 Score=31.29 Aligned_cols=91 Identities=26% Similarity=0.283 Sum_probs=64.0
Q ss_pred EEEEC-CCCHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 99934-38988999999999840887531-11124555544445667777777660389999999974986232200000
Q gi|254780606|r 630 RVHGP-LVSDIEIEKVVQHLKKQGCPEYL-NTVTTDTDTDKDGNNFDSEEKKERSNLYAKAVDLVIDNQRCSTSFIQRRL 707 (744)
Q Consensus 630 r~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~qr~~ 707 (744)
|..|. .||.+++.+.+..|+..|.+ |. ..+. ++..- .-.....+.+..-...++++-..+.+|.+.|.++|
T Consensus 124 r~~g~~lvSp~Dl~~A~~~l~~Lg~~-~~l~~~~-----sg~~~-v~s~~~~e~~~~~~~il~~~~~~~~vt~~~l~~~l 196 (219)
T pfam04157 124 RARGTELVSPDDLLKACKKLEKLGLG-FKLVKVG-----SGVLV-VQSVPDSELSTDQTKILELAEELGGVTASELAEKL 196 (219)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEEC-----CCCEE-EEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 72388878999999999999975999-6999977-----97289-98568410468999999999727994899999997
Q ss_pred CCCHHHHHHHHHHHHHCCCC
Q ss_conf 10078999999999987975
Q gi|254780606|r 708 QIGYNRAALLVERMEQEGLV 727 (744)
Q Consensus 708 ~~g~~ra~~~~~~~e~~g~~ 727 (744)
.+-+.||-..++.||.+|++
T Consensus 197 ~ws~~~a~e~L~~~~~~G~l 216 (219)
T pfam04157 197 GWSIGRAKEVLEKAEKEGLL 216 (219)
T ss_pred CCCHHHHHHHHHHHHHCCCE
T ss_conf 98899999999999974997
No 244
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=94.71 E-value=0.024 Score=35.08 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=63.4
Q ss_pred EEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHC----CEE-------EEEEEECCCCCCCCHHHHHHCCCCEEEEECCCH
Q ss_conf 799984456876753103589999999996420----135-------899985165444414678850563057203681
Q gi|254780606|r 530 YIVIIVDEMADLMMVAGKEIEGAIQRLAQMARA----AGI-------HLIMATQRPSVDVITGTIKANFPIRISFQVTSK 598 (744)
Q Consensus 530 ~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra----~Gi-------hlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~ 598 (744)
+=|+-|||+++| .+.+.+.|-..+.+|+. -|| +|+++|=.|..+-|..+|++-|...|--.-.+.
T Consensus 145 RGIlYvDEvnlL----~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~ 220 (423)
T COG1239 145 RGILYVDEVNLL----DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLD 220 (423)
T ss_pred CCEEEEECCCCC----CHHHHHHHHHHHHHCCCEEEECCEEECCCCCEEEEEECCCCCCCCCHHHHHHHCCEEECCCCCC
T ss_conf 887987233435----1899999999997177403357503136761799964485446632466754111562347887
Q ss_pred HHCCHHCCCCCHHH
Q ss_conf 11003267631688
Q gi|254780606|r 599 IDSRTILGEHGAEQ 612 (744)
Q Consensus 599 ~dsr~il~~~gae~ 612 (744)
.+-|+.+-...++.
T Consensus 221 ~~~rv~Ii~r~~~f 234 (423)
T COG1239 221 LEERVEIIRRRLAF 234 (423)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 88889999998875
No 245
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=94.70 E-value=0.11 Score=30.63 Aligned_cols=187 Identities=17% Similarity=0.295 Sum_probs=84.6
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE--ECCC---------CCEECCCCCCCCEEEEEEEC
Q ss_conf 211201148469970787534479999999999856801107999--7234---------21000125775200004444
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM--VDPK---------MLELSVYDGIPHLLTPVVTN 473 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l--iD~k---------~~~~~~~~~~ph~~~~v~~~ 473 (744)
+-+++.+.--+-+-|-.|||||++|+ +|.+|+ .|+.=++++ .|-. +.-|-.|.-.||+- |..+
T Consensus 38 vsl~I~~GE~~~llGpsGsGKSTllr-~i~Gl~---~p~~G~I~i~G~di~~~~~~~r~ig~vfQ~~~L~p~lt--V~eN 111 (377)
T PRK11607 38 VSLTIYKGEIFALLGASGCGKSTLLR-MLAGFE---QPSAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMT--VEQN 111 (377)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHH-HHHCCC---CCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCC--HHHH
T ss_conf 18799999899999999848999999-997699---99865999999998879866665046701265587757--5452
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHCCCCCHHHHHH------------HHHHHHCCCCCCCCCCCCCCCEEEEEHHHH-H
Q ss_conf 17876899999986676999-999807786799999------------886420267766654323386799984456-8
Q gi|254780606|r 474 PKKAVMALKWAVREMEERYR-KMSHLSVRNIKSYNE------------RISTMYGEKPQGCGDDMRPMPYIVIIVDEM-A 539 (744)
Q Consensus 474 ~~~~~~~l~~~~~em~~r~~-~~~~~~~~~i~~~n~------------~~~~~~~~~~~~~~~~~~~~p~ivvviDE~-a 539 (744)
........+.-..|+.+|.. ++...+ +.+|-. |+.-.+. +-.-|.+ ++.||= +
T Consensus 112 i~~~l~~~~~~~~e~~~rv~e~l~~v~---L~~~~~~~p~~LSGGqrQRVaiArA---------L~~~P~l-LllDEPts 178 (377)
T PRK11607 112 IAFGLKQDKLPKAEIASRVNEMLGLVH---MQEFAKRKPHQLSGGQRQRVALARS---------LAKRPKL-LLLDEPMG 178 (377)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCC---CHHHHHCCHHHCCHHHHHHHHHHHH---------HHCCCCE-EEECCCCC
T ss_conf 454786659998999999999985446---2766658965789868789999998---------7449978-99648754
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEE----CCCHHHCCHHCCCCCH---HH
Q ss_conf 7675310358999999999642013589998516544441467885056305720----3681110032676316---88
Q gi|254780606|r 540 DLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQ----VTSKIDSRTILGEHGA---EQ 612 (744)
Q Consensus 540 ~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~----v~~~~dsr~il~~~ga---e~ 612 (744)
.|- .+--+.....|-++-+..|+-+|+.|-... +++ .+.-||+.- +.....-+.|...+-- -.
T Consensus 179 ~LD---~~~r~~l~~~l~~l~~~~g~Tii~VTHD~~-eA~------~laDrI~Vm~~G~Ivq~GtP~Eiy~~P~~~fva~ 248 (377)
T PRK11607 179 ALD---KKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAM------TMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAE 248 (377)
T ss_pred CCC---HHHHHHHHHHHHHHHHHHCCEEEEECCCHH-HHH------HHCCEEEEEECCEEEEEECHHHHHHCCCCHHHHH
T ss_conf 479---999999999999999973999999998999-999------8699999998999999968899986899858987
Q ss_pred HCCCCCEE
Q ss_conf 56898468
Q gi|254780606|r 613 LLGRGDML 620 (744)
Q Consensus 613 l~g~gd~l 620 (744)
++|.--+|
T Consensus 249 f~G~~N~l 256 (377)
T PRK11607 249 FIGSVNVF 256 (377)
T ss_pred HCCCCCEE
T ss_conf 27935057
No 246
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.69 E-value=0.32 Score=27.41 Aligned_cols=147 Identities=15% Similarity=0.213 Sum_probs=66.4
Q ss_pred CCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCC-CE----E-CCCCCCCCEEEEEEECHHHHHHH
Q ss_conf 120114846997078753447999999999985680110799972342-10----0-01257752000044441787689
Q gi|254780606|r 407 ADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKM-LE----L-SVYDGIPHLLTPVVTNPKKAVMA 480 (744)
Q Consensus 407 ~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~-~~----~-~~~~~~ph~~~~v~~~~~~~~~~ 480 (744)
+++.+.=.+.+.|..|||||++++. |++|+ .|+.=+++ ++-+. .. . ..|++ ++++ +..+-.+.....
T Consensus 33 ~~I~~GEiv~LiG~nGaGKSTLlr~-i~Gl~---~p~~G~I~-~~~~~i~~~~~~i~~vfQ~-~~l~-~~~tV~eni~~g 105 (257)
T PRK11247 33 LHIPAGQFVAVVGRSGCGKSTLLRL-LAGLE---TPTAGDLL-AGTAPLAEAQEDTRLMFQD-ARLL-PWKKVIDNVGLG 105 (257)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCCEEE-ECCEEHHHHHHCEEEEECC-CCCC-CCCCHHHHHHHH
T ss_conf 5887998999998998889999999-96589---88887089-8987554431100799325-6447-677899998632
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHH-HHHHCCHHHH
Q ss_conf 9999986676999999807786799---------99988642026776665432338679998445687-6753103589
Q gi|254780606|r 481 LKWAVREMEERYRKMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMAD-LMMVAGKEIE 550 (744)
Q Consensus 481 l~~~~~em~~r~~~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~-l~~~~~~~~e 550 (744)
++.. ..++-.+.+...|..+... -.+|+.-.+.- -.-|. +++.||=.. |-. ...+
T Consensus 106 l~~~--~~~~~~e~l~~vgL~~~~~~~p~~LSGGqkQRvaiAraL---------~~~P~-lLlLDEPtsgLD~---~~~~ 170 (257)
T PRK11247 106 LKGQ--WRDAALQALAAVGLADRANEWPAALSGGQKQRVALARAL---------IHRPR-LLLLDEPLGALDA---LTRI 170 (257)
T ss_pred CCCC--HHHHHHHHHHHCCCCHHHHCCHHHCCHHHHHHHHHHHHH---------HCCCC-EEEEECCCCCCCH---HHHH
T ss_conf 1410--699999999985991355369444899999999999998---------45999-9998098765799---9999
Q ss_pred HHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 9999999964201358999851654
Q gi|254780606|r 551 GAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 551 ~~~~~la~~~ra~GihlilatQrp~ 575 (744)
..+.-|.+..+..|+-+|+.|...+
T Consensus 171 ~i~~ll~~L~~e~g~TIi~vTHdl~ 195 (257)
T PRK11247 171 EMQDLIESLWQQHGFTVLLVTHDVS 195 (257)
T ss_pred HHHHHHHHHHHHHCCEEEEECCCHH
T ss_conf 9999999999960989999887999
No 247
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.65 E-value=0.36 Score=27.05 Aligned_cols=155 Identities=16% Similarity=0.203 Sum_probs=79.0
Q ss_pred HHHCCC-EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCC--EECCCCCCCCEEEEEEECHHHHHHHHHHHH
Q ss_conf 011484-69970787534479999999999856801107999723421--000125775200004444178768999999
Q gi|254780606|r 409 LANMPH-ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKML--ELSVYDGIPHLLTPVVTNPKKAVMALKWAV 485 (744)
Q Consensus 409 l~~~PH-~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~--~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~ 485 (744)
-.+.|| .|+.|--|.||+.|-..+..+|+-.+ ++.. |+-+. .-..+..--|--..++. +++.....
T Consensus 18 ~~rl~HA~Lf~G~~G~GK~~lA~~~A~~LlC~~-~~~~-----~~Cg~C~sC~~~~~~~HPD~~~i~-pe~~~~~I---- 86 (328)
T PRK05707 18 RGRHAHAYLLHGPAGIGKRALAERLAAFLLCEA-PQGG-----GACGSCKGCQLLAAGSHPDNFVLE-PEEADKPI---- 86 (328)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCC-CCCC-----CCCCCCHHHHHHHCCCCCCEEEEE-CCCCCCCC----
T ss_conf 798220464479998679999999999984899-9998-----999888899998758999879984-26667769----
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEE
Q ss_conf 86676999999807786799999886420267766654323386799984456876753103589999999996420135
Q gi|254780606|r 486 REMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGI 565 (744)
Q Consensus 486 ~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gi 565 (744)
++..|.....++... ... =-|-|+|||+. |.|.... ..++-.+-- -=.-+.
T Consensus 87 -------------~IdqIR~l~~~~~~~---~~~--------g~~KV~iI~~A-e~m~~~A---aNALLKtLE-EPp~~t 137 (328)
T PRK05707 87 -------------KVDQVRELVSFVVQT---AQL--------GGRKVVLIEPA-EAMNRNA---ANALLKSLE-EPSGQT 137 (328)
T ss_pred -------------CHHHHHHHHHHHHHC---CCC--------CCCEEEEEEHH-HHHCHHH---HHHHHHHHH-CCCCCE
T ss_conf -------------799999999998317---667--------89579995028-7738999---999999850-789875
Q ss_pred EEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCC
Q ss_conf 89998516544441467885056305720368111003267
Q gi|254780606|r 566 HLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILG 606 (744)
Q Consensus 566 hlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~ 606 (744)
.+||.|..|+ .++++ |++=.- ++.|...+..+...-|-
T Consensus 138 ~fiL~t~~~~-~lLpT-I~SRCq-~~~~~~p~~e~~~~~L~ 175 (328)
T PRK05707 138 VLLLISHQPS-RLLPT-IKSRCQ-QLACPLPSNEPSLQWLQ 175 (328)
T ss_pred EEEEEECCHH-HCHHH-HHHCCE-EEECCCCCHHHHHHHHH
T ss_conf 9998609934-48258-874141-33489989999999999
No 248
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=94.63 E-value=0.36 Score=27.02 Aligned_cols=111 Identities=14% Similarity=0.298 Sum_probs=59.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46997078753447999999999985680110799972342100012577520000444417876899999986676999
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEERYR 493 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r~~ 493 (744)
.+.|-|.+|+|||-+|+++...+... .++ .+++.++.. .. ....+....
T Consensus 36 pl~i~G~~G~GKTHLLqA~~~~~~~~-~~~-~~v~yl~~~----------------------~~---~~~~~~~l~---- 84 (219)
T pfam00308 36 PLFIYGGVGLGKTHLLHAIGNYALRN-FPN-LRVVYLTSE----------------------EF---LNDFVDALR---- 84 (219)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHH-CCC-CEEEEEEHH----------------------HH---HHHHHHHHH----
T ss_conf 26998899998889999999999984-999-828884399----------------------99---998899998----
Q ss_pred HHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECC
Q ss_conf 99980778679999988642026776665432338679998445687675310358999999999642013589998516
Q gi|254780606|r 494 KMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQR 573 (744)
Q Consensus 494 ~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQr 573 (744)
-..+..+..+... .=+++||.+..+. .....+..+-.|--.-+..|-+||++..+
T Consensus 85 ------~~~~~~f~~~l~~-----------------~d~l~iDDi~~l~--~~~~~ee~lf~l~N~~~~~~~~lllts~~ 139 (219)
T pfam00308 85 ------DNKIEAFKKSYRN-----------------VDLLLIDDIQFLA--GKEKTQEEFFHTFNALHENNKQIVLTSDR 139 (219)
T ss_pred ------CCCHHHHHHHHHH-----------------CCHHHHCCHHHHC--CCHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf ------1888899999763-----------------2336522367656--86478999999999999729869997799
Q ss_pred CCCCCCHH
Q ss_conf 54444146
Q gi|254780606|r 574 PSVDVITG 581 (744)
Q Consensus 574 p~~~vi~~ 581 (744)
+-.+ +..
T Consensus 140 ~p~~-l~~ 146 (219)
T pfam00308 140 PPKE-LEG 146 (219)
T ss_pred CCCC-CCC
T ss_conf 8100-245
No 249
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=94.61 E-value=0.046 Score=33.13 Aligned_cols=44 Identities=27% Similarity=0.456 Sum_probs=31.5
Q ss_pred CCCCCEEECCHHH---CCCEEEEECCCCCHHHHHHHHHHHHHHHCCHH
Q ss_conf 5788732112011---48469970787534479999999999856801
Q gi|254780606|r 399 TISGESVIADLAN---MPHILVAGTTGSGKSVAINTMIMSLLYRLRPD 443 (744)
Q Consensus 399 ~~~g~~~~~dl~~---~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~ 443 (744)
...+.....|+.+ .+-.||.|.||||||.+|++|...| |-..|.
T Consensus 12 ~~y~g~~~IDF~~~~~~~lflI~G~nGsGKSTIlDAI~~aL-YGk~~r 58 (213)
T cd03279 12 GPFREEQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYAL-YGKTPR 58 (213)
T ss_pred CCCCCCEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCC
T ss_conf 04589717848767878889998899997889999999998-388823
No 250
>COG1158 Rho Transcription termination factor [Transcription]
Probab=94.59 E-value=0.041 Score=33.50 Aligned_cols=156 Identities=22% Similarity=0.300 Sum_probs=85.0
Q ss_pred ECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEE----CHHHH
Q ss_conf 1120----114846997078753447999999999985680110799972342100012577520000444----41787
Q gi|254780606|r 406 IADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVT----NPKKA 477 (744)
Q Consensus 406 ~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~----~~~~~ 477 (744)
+.|| .|.-..||..-..+||+++|+.|.-++...|+--.+=++|||-.--|-+..+..-. +-|+. .+-.-
T Consensus 163 viDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqrsV~--geViaSTFDepp~~ 240 (422)
T COG1158 163 VIDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTDMQRSVK--GEVVASTFDEPPSR 240 (422)
T ss_pred HHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHC--CEEEEECCCCCHHH
T ss_conf 7665265678846568669878733899999999863799649999993478067777887524--06986448886054
Q ss_pred HHHHHHHHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 689999998667-6999999807786799999886420267766654323386799984456876753103589999999
Q gi|254780606|r 478 VMALKWAVREME-ERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRL 556 (744)
Q Consensus 478 ~~~l~~~~~em~-~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~l 556 (744)
.. -|.||- +|.+.+-+ .++++--++..|
T Consensus 241 Hv----qVAE~viEkAKRlVE-----------------------------------------------~~kDVVILLDSI 269 (422)
T COG1158 241 HV----QVAEMVIEKAKRLVE-----------------------------------------------HGKDVVILLDSI 269 (422)
T ss_pred HH----HHHHHHHHHHHHHHH-----------------------------------------------CCCCEEEEEHHH
T ss_conf 68----999999999998887-----------------------------------------------178689996567
Q ss_pred HHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEE-----EEECCCHHHCCHHCCCC----C-------HHHHCCCCCE
Q ss_conf 99642013589998516544441467885056305-----72036811100326763----1-------6885689846
Q gi|254780606|r 557 AQMARAAGIHLIMATQRPSVDVITGTIKANFPIRI-----SFQVTSKIDSRTILGEH----G-------AEQLLGRGDM 619 (744)
Q Consensus 557 a~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri-----~~~v~~~~dsr~il~~~----g-------ae~l~g~gd~ 619 (744)
.++|||+-. +.-||-.+++|.+-+|.=.|= |-|--....|=|||... | -|-..|-|.|
T Consensus 270 TRLaRAYN~-----v~P~SGkvLsGGvD~nAL~~PKrFFGAARNIEeGGSLTIiATALVdTGSrMDeVIfEEFKGTGNm 343 (422)
T COG1158 270 TRLARAYNT-----VVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNM 343 (422)
T ss_pred HHHHHHHCC-----CCCCCCCEECCCCCHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCE
T ss_conf 789988536-----67997774048738566048355421220554586341111124414775112025342577750
No 251
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.59 E-value=0.03 Score=34.45 Aligned_cols=47 Identities=23% Similarity=0.475 Sum_probs=31.0
Q ss_pred CCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 87321120----11484699707875344799999999998568011079997234
Q gi|254780606|r 402 GESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK 453 (744)
Q Consensus 402 g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k 453 (744)
|+||.-|+ .+.=.+-|.|.||||||++++.| +++ +.|+.=++ .+|-+
T Consensus 49 ~~pVLk~Isf~I~~Ge~vaIVG~sGSGKSTLl~lL-~gl---~~p~~G~I-~~~g~ 99 (282)
T cd03291 49 GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLI-LGE---LEPSEGKI-KHSGR 99 (282)
T ss_pred CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHH-HCC---CCCCCCEE-EECCE
T ss_conf 89614164899849999999999998199999999-578---72786589-99999
No 252
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.57 E-value=0.066 Score=32.06 Aligned_cols=187 Identities=16% Similarity=0.174 Sum_probs=81.6
Q ss_pred EEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECH---------
Q ss_conf 32112011484699707875344799999999998568011079997234210001257752000044441---------
Q gi|254780606|r 404 SVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNP--------- 474 (744)
Q Consensus 404 ~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~--------- 474 (744)
-+-+++.+.--+.|-|..|||||++++. |++| +...--++.+--.|-+...+..+. +.++-|.-++
T Consensus 27 ~is~~i~~Ge~vaiiG~sGsGKSTLl~l-l~Gl-~~p~~G~I~~~g~~i~~~~~~~~~---~~ig~vfQ~p~~~~~~~tv 101 (269)
T PRK13648 27 DVSFNIPKGQWTSIVGHNGSGKSTIAKL-MIGI-EKVKSGEIFYNNQAITDDNFEKLR---KDIGIVFQNPDNQFVGSIV 101 (269)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHH-HHCC-CCCCCEEEEECCEECCCCCHHHHH---HHCEEEEECHHHHCCCCHH
T ss_conf 4589985998999999999979999999-9649-799850999999999988989997---5026998871320472179
Q ss_pred -HHHHHHHH---HHHHHHHHHHHH-HHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHH
Q ss_conf -78768999---999866769999-99807786799---------99988642026776665432338679998445687
Q gi|254780606|r 475 -KKAVMALK---WAVREMEERYRK-MSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMAD 540 (744)
Q Consensus 475 -~~~~~~l~---~~~~em~~r~~~-~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~ 540 (744)
+.....+. +-..++++|... +...+..+..+ -.+|++-.+. +-.-|- +++.||=--
T Consensus 102 ~~~i~~gl~~~~~~~~e~~~~v~~~L~~~~l~~~~~~~p~~LSGGqkQRvaiAra---------L~~~P~-iLilDEPTs 171 (269)
T PRK13648 102 KYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIASV---------LALNPS-VIILDEATS 171 (269)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHH---------HHHCCC-EEEECCCCC
T ss_conf 9999733644699999999999999987699134418964389999999999999---------975989-999818755
Q ss_pred -HHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCCCCE
Q ss_conf -6753103589999999996420135899985165444414678850563057203681110032676316885689846
Q gi|254780606|r 541 -LMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDM 619 (744)
Q Consensus 541 -l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~gd~ 619 (744)
|-....+++... |-++.+..|+-+|+.|.+.+. ++ + --||.+== +.+++.+ +-.+.++.+-+.
T Consensus 172 ~LD~~~~~~i~~l---l~~L~~~~~~TvI~itHdl~~------a~-~-aDrvivl~----~G~Iv~~-Gtp~Evf~~~~~ 235 (269)
T PRK13648 172 MLDPDARQNLLDL---VRKVKSEHNITIISITHDLSE------AM-E-ADHVIVMN----KGTVYKE-GTATEIFDHAEE 235 (269)
T ss_pred CCCHHHHHHHHHH---HHHHHHCCCCEEEEEEECHHH------HH-H-CCEEEEEE----CCEEEEE-CCHHHHHCCHHH
T ss_conf 4899999999999---999997379899999767899------97-1-99899998----9999997-589998779889
Q ss_pred EE
Q ss_conf 86
Q gi|254780606|r 620 LY 621 (744)
Q Consensus 620 l~ 621 (744)
|.
T Consensus 236 l~ 237 (269)
T PRK13648 236 LT 237 (269)
T ss_pred HH
T ss_conf 99
No 253
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.56 E-value=0.077 Score=31.62 Aligned_cols=139 Identities=24% Similarity=0.318 Sum_probs=65.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEE-----CCC------------CCEECCCCCCCCEEEEEEECHHHH
Q ss_conf 699707875344799999999998568011079997-----234------------210001257752000044441787
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMV-----DPK------------MLELSVYDGIPHLLTPVVTNPKKA 477 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~li-----D~k------------~~~~~~~~~~ph~~~~v~~~~~~~ 477 (744)
+-|.|.+|||||++|+. |.+|. .|+.=++++- |.+ +.-|-.|.-+||+- |..|...
T Consensus 26 ~~iiGpSGsGKSTll~~-i~GL~---~p~sG~I~~~G~~~~~~~~~~~~~~~~r~ig~VfQ~~~Lfp~lt--V~eNi~~- 98 (214)
T cd03297 26 TGIFGASGAGKSTLLRC-IAGLE---KPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN--VRENLAF- 98 (214)
T ss_pred EEEECCCCCHHHHHHHH-HHCCC---CCCCEEEEECCEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCC--HHHHHHH-
T ss_conf 99999997359999999-98499---99964999999997665412467713487589767876578891--9999988-
Q ss_pred HHHHHHH-HHHHHHH-HHHHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHH-HHHHHHHC
Q ss_conf 6899999-9866769-99999807786799---------99988642026776665432338679998445-68767531
Q gi|254780606|r 478 VMALKWA-VREMEER-YRKMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDE-MADLMMVA 545 (744)
Q Consensus 478 ~~~l~~~-~~em~~r-~~~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE-~a~l~~~~ 545 (744)
.|+.. ..+.+.| .+++...+..++.+ -.+|++-.+.- -.-|.+ ++.|| |+.|--..
T Consensus 99 --~l~~~~~~~~~~~v~e~l~~~gl~~~~~~~P~~LSGGq~QRVaiARAL---------~~~P~l-lLlDEP~saLD~~~ 166 (214)
T cd03297 99 --GLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARAL---------AAQPEL-LLLDEPFSALDRAL 166 (214)
T ss_pred --HHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH---------HCCCCE-EEEECCCCCCCHHH
T ss_conf --876798689999999999877997786089777992999999999998---------719999-99808876669999
Q ss_pred CHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 035899999999964201358999851654
Q gi|254780606|r 546 GKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 546 ~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
.. ..+..|-+.-+..|+-+|+.|-.+.
T Consensus 167 ~~---~i~~~l~~l~~~~~~t~i~VTHd~~ 193 (214)
T cd03297 167 RL---QLLPELKQIKKNLNIPVIFVTHDLS 193 (214)
T ss_pred HH---HHHHHHHHHHHHHCCEEEEECCCHH
T ss_conf 99---9999999999985998999989999
No 254
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.56 E-value=0.17 Score=29.23 Aligned_cols=49 Identities=24% Similarity=0.396 Sum_probs=30.2
Q ss_pred ECCCCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEE
Q ss_conf 057887321120----11484699707875344799999999998568011079997
Q gi|254780606|r 398 KTISGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMV 450 (744)
Q Consensus 398 ~~~~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~li 450 (744)
+...++.++-|+ .+.-=+.+-|.-|+|||++|+. |++++ .|+.=.+.+-
T Consensus 10 ~~~g~~~il~~vsf~i~~Gei~~l~G~NGaGKTTLlk~-i~Gl~---~p~~G~I~~~ 62 (206)
T PRK13539 10 CVRGGRVVFSGLSFTLAAGEALVLTGPNGSGKTTLLRL-LAGLL---PPAAGTIKLD 62 (206)
T ss_pred EEECCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHH-HHCCC---CCCCEEEEEC
T ss_conf 99999999815078986994999989999989999999-95887---8885189999
No 255
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.54 E-value=0.11 Score=30.56 Aligned_cols=20 Identities=20% Similarity=0.579 Sum_probs=10.6
Q ss_pred HHCCEEEEEEEECCCCCCCC
Q ss_conf 42013589998516544441
Q gi|254780606|r 560 ARAAGIHLIMATQRPSVDVI 579 (744)
Q Consensus 560 ~ra~GihlilatQrp~~~vi 579 (744)
|+-.|+.|||++-.||....
T Consensus 314 a~~~~~~liLgSaTPSlEs~ 333 (699)
T PRK05580 314 AKQEGCPVVLGSATPSLESL 333 (699)
T ss_pred HHHHCCCEEECCCCCCHHHH
T ss_conf 99849988961689999999
No 256
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=94.50 E-value=0.27 Score=27.88 Aligned_cols=32 Identities=13% Similarity=0.379 Sum_probs=24.2
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCH
Q ss_conf 14846997078753447999999999985680
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRP 442 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p 442 (744)
|.=-+||.|-.|+|||.+|+.+..+-.....|
T Consensus 14 k~~KililG~~~sGKTsil~~l~~~~~~~~~p 45 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSP 45 (174)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 77999999899998899999997399277167
No 257
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.45 E-value=0.29 Score=27.62 Aligned_cols=152 Identities=14% Similarity=0.167 Sum_probs=70.1
Q ss_pred HHCCCE-EEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEE--CCCCCCCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 114846-997078753447999999999985680110799972342100--01257752000044441787689999998
Q gi|254780606|r 410 ANMPHI-LVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLEL--SVYDGIPHLLTPVVTNPKKAVMALKWAVR 486 (744)
Q Consensus 410 ~~~PH~-lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~--~~~~~~ph~~~~v~~~~~~~~~~l~~~~~ 486 (744)
.+.||. |..|--|+||+.+-+.+...|+-.+ ++.. ++-+.-- ..+...-|--.-.+ .++... + -+.
T Consensus 25 ~rl~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~-~~~~-----~~Cg~C~~C~~~~~~~HPD~~~i-~p~~~~--i--~id 93 (329)
T PRK08058 25 NRLAHAYLFEGAKGTGKKATALWLAKSLFCLE-RNGV-----EPCGTCTNCKRIESGNHPDVHLV-APDGQS--I--KKD 93 (329)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-CCCC-----CCCCCCHHHHHHHCCCCCCEEEE-CCCCCC--C--CHH
T ss_conf 99661565578999889999999999973999-9999-----98878889999876999976774-566140--7--799
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEE
Q ss_conf 66769999998077867999998864202677666543233867999844568767531035899999999964201358
Q gi|254780606|r 487 EMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIH 566 (744)
Q Consensus 487 em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gih 566 (744)
.+. .+. +++.. .... =.|-|+|||+.-.|...+ ..++-.+-- -=..+..
T Consensus 94 qiR---~L~------------~~~~~---~p~~--------g~~KV~II~~Ae~m~~~A----aNALLKtLE-EPp~~t~ 142 (329)
T PRK08058 94 QIR---YLK------------EEFSK---SGVE--------SNKKVYIIEHADKMTASA----ANSLLKFLE-EPSGDTT 142 (329)
T ss_pred HHH---HHH------------HHHCC---CCCC--------CCCEEEEEECHHHHCHHH----HHHHHHHHH-CCCCCCE
T ss_conf 999---999------------99643---8757--------886799973477629999----999999864-6897867
Q ss_pred EEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCC
Q ss_conf 9998516544441467885056305720368111003267
Q gi|254780606|r 567 LIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILG 606 (744)
Q Consensus 567 lilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~ 606 (744)
.||+|..++ .++++ |++=. -+|-|+.-+..+-...|-
T Consensus 143 fIL~t~~~~-~lLpT-I~SRC-q~i~f~~~~~~~i~~~L~ 179 (329)
T PRK08058 143 AILLTENKH-QILPT-ILSRC-QVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred EEEEECCHH-HHHHH-HHHCC-EEEECCCCCHHHHHHHHH
T ss_conf 998729966-64368-86314-256588999999999999
No 258
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.44 E-value=0.04 Score=33.56 Aligned_cols=186 Identities=18% Similarity=0.245 Sum_probs=82.6
Q ss_pred ECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCC-------CEE--------CCCCCCCCEEEEE
Q ss_conf 1120114846997078753447999999999985680110799972342-------100--------0125775200004
Q gi|254780606|r 406 IADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKM-------LEL--------SVYDGIPHLLTPV 470 (744)
Q Consensus 406 ~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~-------~~~--------~~~~~~ph~~~~v 470 (744)
-+++.+.=-+.|.|.+|||||++++. |.+|+ .|+.=++.+ +-+. ..+ ..|++--+.+..-
T Consensus 14 sl~i~~Ge~vaiiG~sGsGKSTLl~~-l~GLl---~P~~G~i~~-~g~~i~~~~~~~~~~~lr~~vG~VfQ~P~~ql~~~ 88 (276)
T PRK13634 14 NVSIPSGSYVAIIGHTGSGKSTLLQH-LNGLL---KPTKGTVTI-GERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEE 88 (276)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCEEEEE-CCEECCCCCCHHHHHHHHHCEEEEEECCCHHCCHH
T ss_conf 77998998999999999699999999-97499---988749999-99988688866668998732689998762001551
Q ss_pred EECHHHHHHHHHH---HHHHHHHHH-HHHHHCCCC-CHHH-H--------HHHHHHHHCCCCCCCCCCCCCCCEEEEEHH
Q ss_conf 4441787689999---998667699-999980778-6799-9--------998864202677666543233867999844
Q gi|254780606|r 471 VTNPKKAVMALKW---AVREMEERY-RKMSHLSVR-NIKS-Y--------NERISTMYGEKPQGCGDDMRPMPYIVIIVD 536 (744)
Q Consensus 471 ~~~~~~~~~~l~~---~~~em~~r~-~~~~~~~~~-~i~~-~--------n~~~~~~~~~~~~~~~~~~~~~p~ivvviD 536 (744)
|-.+..+..+.. -..++++|. +++...|.. ++.. | .+|++-... +.--|. +++.|
T Consensus 89 -tV~e~iafg~~~~g~~~~e~~~rv~~~L~~vgL~~~~~~r~p~~LSGGqkQRVaIA~a---------La~~P~-iLllD 157 (276)
T PRK13634 89 -TVEKDICFGPMNFGVSEEEAKQKAKEMIELVGLPEELLARSPFELSGGQMRRVAIAGV---------LAMEPE-VLVLD 157 (276)
T ss_pred -HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHHCCHHHHHHHHHHHH---------HHCCCC-EEEEC
T ss_conf -5999999999986999999999999999976998778618900189999999999999---------972999-89976
Q ss_pred HHHH-HHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCC
Q ss_conf 5687-675310358999999999642013589998516544441467885056305720368111003267631688568
Q gi|254780606|r 537 EMAD-LMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLG 615 (744)
Q Consensus 537 E~a~-l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g 615 (744)
|=.. |-.....++ +.-|.++.+..|+-+|+.|...+ .+ +.+.-||.+- .+-++|.+.. .+.++.
T Consensus 158 EPTs~LD~~~~~~i---~~ll~~L~~e~g~Tii~vTHdl~--~~-----~~~aDrvivm----~~G~Iv~~G~-p~evf~ 222 (276)
T PRK13634 158 EPTAGLDPKGRKEI---MEMFYKLHKEKGLTTVLVTHSME--DA-----ARYADQIVVM----HKGTVFLQGT-PREIFS 222 (276)
T ss_pred CCCCCCCHHHHHHH---HHHHHHHHHHCCCEEEEECCCHH--HH-----HHHCCEEEEE----ECCEEEEECC-HHHHHC
T ss_conf 98542799999999---99999999961999999867999--99-----9979999999----8999999878-999972
Q ss_pred CCCEEEE
Q ss_conf 9846864
Q gi|254780606|r 616 RGDMLYM 622 (744)
Q Consensus 616 ~gd~l~~ 622 (744)
+-+.|..
T Consensus 223 ~p~~l~~ 229 (276)
T PRK13634 223 HPDELEA 229 (276)
T ss_pred CHHHHHH
T ss_conf 9999997
No 259
>pfam07088 GvpD GvpD gas vesicle protein. This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation.
Probab=94.44 E-value=0.068 Score=32.00 Aligned_cols=80 Identities=18% Similarity=0.193 Sum_probs=43.1
Q ss_pred EEEEHHHHHHHHH------HCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHH
Q ss_conf 9998445687675------3103589999999996420135899985165444414678850563057203681110032
Q gi|254780606|r 531 IVIIVDEMADLMM------VAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTI 604 (744)
Q Consensus 531 ivvviDE~a~l~~------~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~i 604 (744)
..|++|-+-.++. ..+..++....+|...+|..|+|||+-.-.-...-+.- -...=|.++|..-.+-|++
T Consensus 108 ~~Ia~DSW~~i~eyLa~r~d~pe~f~~~~n~lv~lar~~g~~Li~v~E~~~~~~LeY----ivDGVVtL~vk~d~~GR~~ 183 (484)
T pfam07088 108 LTIAFDSWELIYEYLAERHDIPPDILTVTNQLVALARGSGARLVLVLETAQNSRLEY----IVDGVVTLNVKNDERGRTR 183 (484)
T ss_pred CEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHH----EEEEEEEEEEEECCCCCEE
T ss_conf 479983289999987776168466756665677766525945999982366775121----2303899988625678376
Q ss_pred CCCCCHHHHCC
Q ss_conf 67631688568
Q gi|254780606|r 605 LGEHGAEQLLG 615 (744)
Q Consensus 605 l~~~gae~l~g 615 (744)
-.---|+|.|
T Consensus 184 -R~L~LeKLRG 193 (484)
T pfam07088 184 -RSLRLEKLRG 193 (484)
T ss_pred -EEEEHHHHCC
T ss_conf -7767234227
No 260
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=94.43 E-value=0.4 Score=26.70 Aligned_cols=183 Identities=17% Similarity=0.229 Sum_probs=82.2
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHC---CHHHEEEEEECCCCC---EEC---------CCCCCCCEEEE
Q ss_conf 211201148469970787534479999999999856---801107999723421---000---------12577520000
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRL---RPDECRMIMVDPKML---ELS---------VYDGIPHLLTP 469 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~---~p~~~~~~liD~k~~---~~~---------~~~~~ph~~~~ 469 (744)
|-+++.+.=-+-|.|.+|||||+++++|+ +|+-.. ....+.|--.|.... ++. .|++--.-+.|
T Consensus 26 Vsf~i~~GEilgivGeSGsGKSTl~~~il-gll~~~~~~~~g~i~~~g~dl~~~~~~~~~~~~g~~i~~vfQdp~~sLnP 104 (327)
T PRK11022 26 ISYSVKQGEVVGIVGESGSGKSVSSLAIM-GLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNP 104 (327)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHH-CCCCCCCCEEEEEEEECCEECCCCCHHHHHHHHCCCEEEEECCCHHHCCH
T ss_conf 18798899999999999878999999997-48898997654279999999774999999986377669996085132074
Q ss_pred EEECHHHHHHHHHHH----HHHH-HHHHHHHHHCCCCCHHHH-H-----------HHHHHHHCCCCCCCCCCCCCCCEEE
Q ss_conf 444417876899999----9866-769999998077867999-9-----------9886420267766654323386799
Q gi|254780606|r 470 VVTNPKKAVMALKWA----VREM-EERYRKMSHLSVRNIKSY-N-----------ERISTMYGEKPQGCGDDMRPMPYIV 532 (744)
Q Consensus 470 v~~~~~~~~~~l~~~----~~em-~~r~~~~~~~~~~~i~~~-n-----------~~~~~~~~~~~~~~~~~~~~~p~iv 532 (744)
..+--......++.. ..+. ++-.+++...|..+-..+ | +|+..... +---|. +
T Consensus 105 ~~tv~~~i~e~l~~~~~~~~~~~~~r~~elL~~vgl~~~~~~l~~yP~eLSGGq~QRV~IArA---------L~~~P~-l 174 (327)
T PRK11022 105 CYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMA---------IACRPK-L 174 (327)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHCCHHHHHHHHHHHH---------HHHCCC-E
T ss_conf 555557677788875278889999999999987158568889742855469999999999999---------970999-9
Q ss_pred EEHHHHHH-HHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEE----ECCCHHHCCHHCCC
Q ss_conf 98445687-67531035899999999964201358999851654444146788505630572----03681110032676
Q gi|254780606|r 533 IIVDEMAD-LMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISF----QVTSKIDSRTILGE 607 (744)
Q Consensus 533 vviDE~a~-l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~----~v~~~~dsr~il~~ 607 (744)
+|.||=.- |-.....++-+. |..+-+..|+-+|+-|-... ++ +.+--||+. ++-.......|+..
T Consensus 175 LIaDEPTsaLD~~~q~~Il~l---l~~l~~~~g~til~ITHDl~--~v-----~~~aDri~VMy~G~iVE~G~~~~i~~~ 244 (327)
T PRK11022 175 LIADEPTTALDVTIQAQIIEL---LLELQQKENMALVLITHDLA--LV-----AEAAHKIIVMYAGQVVETGDAHEIFRA 244 (327)
T ss_pred EEECCCCCCCCHHHHHHHHHH---HHHHHHHHCCCEEEEECCHH--HH-----HHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 998388765799999999999---99999971994899928899--99-----986998999989889997779999707
Q ss_pred C
Q ss_conf 3
Q gi|254780606|r 608 H 608 (744)
Q Consensus 608 ~ 608 (744)
+
T Consensus 245 P 245 (327)
T PRK11022 245 P 245 (327)
T ss_pred C
T ss_conf 9
No 261
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.36 E-value=0.41 Score=26.61 Aligned_cols=45 Identities=11% Similarity=0.304 Sum_probs=32.2
Q ss_pred EEEEHHHHHHHHH---HCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 9998445687675---31035899999999964201358999851654
Q gi|254780606|r 531 IVIIVDEMADLMM---VAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 531 ivvviDE~a~l~~---~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
-+||||=|+.+.. ....++...+..+.++++.+|.++|+..---.
T Consensus 113 ~LVViDpL~~~~~~dENd~~~m~~~i~~l~~ia~~tg~aVl~vHHt~K 160 (239)
T cd01125 113 DLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CEEEECCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 899983817748999788999999999999999971999999706887
No 262
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.32 E-value=0.049 Score=32.93 Aligned_cols=205 Identities=16% Similarity=0.289 Sum_probs=91.3
Q ss_pred CCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEEC-------------CCCCCC-CEEEEE-E
Q ss_conf 1201148469970787534479999999999856801107999723421000-------------125775-200004-4
Q gi|254780606|r 407 ADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELS-------------VYDGIP-HLLTPV-V 471 (744)
Q Consensus 407 ~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~-------------~~~~~p-h~~~~v-~ 471 (744)
+++.+.=-+.|.|..|||||++++. |.+|+ .|..=++.+ |-+.+... .|++.- .++... .
T Consensus 23 l~I~~Ge~vaiiG~nGsGKSTLl~~-l~Gll---~P~~G~I~v-~G~~i~~~~~~~~~~r~~vg~vfQ~p~~ql~~~tV~ 97 (275)
T PRK13639 23 FKAEEGEMIAILGPNGAGKSTLFLH-FNGIL---KPSSGSVLI-KGEPIKYDKKSLLNVRKTVGIVFQNPDDQLFAPTVE 97 (275)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCEEEEE-CCEECCCCCHHHHHHHHHCEEEECCCHHHHCCCCHH
T ss_conf 8998998999999999649999999-97398---999639999-999998880659999874159933835765627199
Q ss_pred ECHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCHHHH---------HHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHH-
Q ss_conf 4417876899999986676999-9998077867999---------9988642026776665432338679998445687-
Q gi|254780606|r 472 TNPKKAVMALKWAVREMEERYR-KMSHLSVRNIKSY---------NERISTMYGEKPQGCGDDMRPMPYIVIIVDEMAD- 540 (744)
Q Consensus 472 ~~~~~~~~~l~~~~~em~~r~~-~~~~~~~~~i~~~---------n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~- 540 (744)
.+.......+.+-..++++|.. .+...|..++... .+|++-... +.--|- +++.||=..
T Consensus 98 e~i~fg~~~~g~~~~e~~~rv~~~l~~~gL~~~~~~~p~~LSGGqkqRVaiA~a---------La~~P~-iliLDEPTag 167 (275)
T PRK13639 98 EDVAFGPMNLGLSKEEVEKRVKDALKAVGMEGFERKPPHHLSGGQKKRVAIAGI---------LAMNPE-IMVLDEPTSG 167 (275)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHH---------HHCCCC-EEEECCCCCC
T ss_conf 999999998599999999999999987799456657944499999999999888---------736998-9997797554
Q ss_pred HHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCCCCEE
Q ss_conf 67531035899999999964201358999851654444146788505630572036811100326763168856898468
Q gi|254780606|r 541 LMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDML 620 (744)
Q Consensus 541 l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~gd~l 620 (744)
|-.....++...|.+| .+ -|+-+|++|...+ . + +.+-.||.+=- +-++|.+..-. .++-+-|+|
T Consensus 168 LDp~~~~~i~~ll~~l---~~-~G~Tii~iTHdm~--~----~-~~~adrv~vl~----~G~iv~~G~p~-evf~~~~~l 231 (275)
T PRK13639 168 LDPMGASQIMKLLYDL---NK-EGITIIISTHDVD--L----V-PIYANKIYVLN----DGKIIKGGTPK-EIFSDSETI 231 (275)
T ss_pred CCHHHHHHHHHHHHHH---HH-CCCEEEEECCCHH--H----H-HHHCCEEEEEE----CCEEEEECCHH-HHHCCHHHH
T ss_conf 8999999999999999---97-6999999938999--9----9-99699999998----99899987889-987499999
Q ss_pred EECCCCCEEEEEECCCCHHHHHHHHHHHHHCCC
Q ss_conf 646898438999343898899999999984088
Q gi|254780606|r 621 YMSGGGRIQRVHGPLVSDIEIEKVVQHLKKQGC 653 (744)
Q Consensus 621 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 653 (744)
...+= .-..+-++...+++.+.
T Consensus 232 ~~~~l-----------~~P~~~~l~~~L~~~~~ 253 (275)
T PRK13639 232 RSANL-----------RLPRVAHLIELLNKEDN 253 (275)
T ss_pred HHCCC-----------CCCHHHHHHHHHHHCCC
T ss_conf 97799-----------99909999999975369
No 263
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=94.30 E-value=0.27 Score=27.85 Aligned_cols=152 Identities=14% Similarity=0.210 Sum_probs=70.7
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE--ECCC---------CCEECCCCCCCCEEEEEEEC
Q ss_conf 211201148469970787534479999999999856801107999--7234---------21000125775200004444
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM--VDPK---------MLELSVYDGIPHLLTPVVTN 473 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l--iD~k---------~~~~~~~~~~ph~~~~v~~~ 473 (744)
+-+++.+.--+-+-|-.|||||++|+. |.+|. .|+.=++.+ .|.. +.-|-.|.-.||+- |..+
T Consensus 21 vsl~i~~GE~~~llGpSGsGKSTLlr~-iaGL~---~p~sG~I~~~G~dv~~~~~~~r~Ig~vfQ~~~L~p~lt--V~eN 94 (352)
T PRK10851 21 ISLDIPSGQMVALLGPSGSGKTTLLRI-IAGLE---HQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMT--VFDN 94 (352)
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCEEEEECCEECCCCCCCCCCEEEEECCCHHCCCCC--HHHH
T ss_conf 376999998999999998469999999-97699---99956999999999989930084899940712145880--9999
Q ss_pred HHHHHHHHH----HHHHHHHHH-HHHHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHH-
Q ss_conf 178768999----999866769-99999807786799---------999886420267766654323386799984456-
Q gi|254780606|r 474 PKKAVMALK----WAVREMEER-YRKMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDEM- 538 (744)
Q Consensus 474 ~~~~~~~l~----~~~~em~~r-~~~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~- 538 (744)
.......+. .-..++++| .+++...+..++.+ -.+|++-.+.- -.-|. |++.||=
T Consensus 95 i~~gl~~~~~~~~~~~~~~~~rv~~~l~~vgL~~~~~r~p~~LSGGqrQRVaiARAL---------~~~P~-vLLLDEPt 164 (352)
T PRK10851 95 IAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL---------AVEPQ-ILLLDEPF 164 (352)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHH---------HCCCC-EEEEECCC
T ss_conf 987775422113768999999999999875994476099314999999999999998---------65999-99990887
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 8767531035899999999964201358999851654
Q gi|254780606|r 539 ADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 539 a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
+.|-.... ...+..|.++-+..|+-.|+.|-..+
T Consensus 165 s~LD~~~r---~~i~~~l~~L~~e~g~T~i~VTHD~~ 198 (352)
T PRK10851 165 GALDAQVR---KELRRWLRQLHEELKFTSVFVTHDQE 198 (352)
T ss_pred CCCCHHHH---HHHHHHHHHHHHHHCCEEEEECCCHH
T ss_conf 66898999---99999999999973998999988999
No 264
>PRK08181 transposase; Validated
Probab=94.27 E-value=0.43 Score=26.48 Aligned_cols=44 Identities=14% Similarity=0.308 Sum_probs=26.7
Q ss_pred EEEEEHHHHHHHHHHCCHHHHHHHHHHHHH-HHCCEEEEEEEECCCCCC
Q ss_conf 799984456876753103589999999996-420135899985165444
Q gi|254780606|r 530 YIVIIVDEMADLMMVAGKEIEGAIQRLAQM-ARAAGIHLIMATQRPSVD 577 (744)
Q Consensus 530 ~ivvviDE~a~l~~~~~~~~e~~~~~la~~-~ra~GihlilatQrp~~~ 577 (744)
+=++|||||.-+-+ ...+.+..+.-|... +|. -+|+.||+|-.+
T Consensus 168 ~dLLIiDe~G~~~~-~~~~~~~lf~lI~~Rye~~---S~IITSn~~~~~ 212 (269)
T PRK08181 168 FDLLILDDLAYVTK-DQAETSVLFELISARYERR---SILITANQPFGE 212 (269)
T ss_pred CCEEEEHHCCCCCC-CHHHHHHHHHHHHHHHCCC---CEEEECCCCHHH
T ss_conf 46012201056679-9899999999999985788---889988999778
No 265
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.27 E-value=0.092 Score=31.09 Aligned_cols=36 Identities=22% Similarity=0.420 Sum_probs=26.2
Q ss_pred CCCEEECCHH----HCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 8873211201----148469970787534479999999999
Q gi|254780606|r 401 SGESVIADLA----NMPHILVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 401 ~g~~~~~dl~----~~PH~lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
.|+++.-|+. ..--+.|.|..|||||++|+.|. +++
T Consensus 20 ~~k~iL~~vs~~v~~Gei~~ilGpnGaGKSTLl~~l~-Gl~ 59 (194)
T cd03213 20 SGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALA-GRR 59 (194)
T ss_pred CCCEEEECCEEEEECCEEEEEECCCCCHHHHHHHHHH-CCC
T ss_conf 9998788838899088199999899951999999985-777
No 266
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.26 E-value=0.17 Score=29.21 Aligned_cols=183 Identities=19% Similarity=0.280 Sum_probs=84.4
Q ss_pred ECCCCCEEECCH-------HHCCC-EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCC--CEE
Q ss_conf 057887321120-------11484-69970787534479999999999856801107999723421000125775--200
Q gi|254780606|r 398 KTISGESVIADL-------ANMPH-ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIP--HLL 467 (744)
Q Consensus 398 ~~~~g~~~~~dl-------~~~PH-~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~p--h~~ 467 (744)
.|+.|...+..+ .+.|| .|..|..|.||..+-..+...|+-.+.+.... ..|.... .-| |.+
T Consensus 4 ~~iiGq~~~~~~L~~ai~~~rl~hAyLF~Gp~G~GK~~~A~~fa~~Ll~~~~~~~~~----~~ri~~~----nHPDl~~i 75 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIEQNRIAPAYLFAGPEGVGRKLAALRFIEGLLSQGSPSKNI----RRRLEEG----NHPDLLWV 75 (314)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCH----HHHHHCC----CCCCEEEE
T ss_conf 312594999999999998599674487789998329999999999985789999766----5587518----99977886
Q ss_pred EEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCH
Q ss_conf 00444417876899999986676999999807786799999886420267766654323386799984456876753103
Q gi|254780606|r 468 TPVVTNPKKAVMALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGK 547 (744)
Q Consensus 468 ~~v~~~~~~~~~~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~ 547 (744)
.|......+....-.+...-..++. -...++..|........... .. =.|-|+|||+.- .|...
T Consensus 76 ~P~~~~~g~~~~~~~~~~~~~~~~~--~~~I~idqIR~l~~~l~~~p----------~~-~~~kVvII~~ae-~m~~~-- 139 (314)
T PRK07399 76 EPTYQHQGKLITASEAEEAGLKRKS--PPQIRLEQIREIKRFLSRPP----------LE-APRKVVVIEDAE-TMNEA-- 139 (314)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHCCCC----------CC-CCCEEEEECCHH-HCCHH--
T ss_conf 0562003454557789876530268--77787999999999973188----------56-884799988978-71999--
Q ss_pred HHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCH
Q ss_conf 589999999996420135899985165444414678850563057203681110032676316
Q gi|254780606|r 548 EIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGA 610 (744)
Q Consensus 548 ~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~ga 610 (744)
...++-.+--- =.-++ +||.|..|+ .++++ |++-. -+|-|+--+..+=..+|...|.
T Consensus 140 -AaNaLLKtLEE-P~~~~-fILit~~~~-~lLpT-I~SRC-Q~i~F~~l~~~~i~~~L~~~~~ 196 (314)
T PRK07399 140 -AANALLKTLEE-PGNGT-LILIAPSPE-SLLPT-IVSRC-QIIPFYRLSDEQLEQVLKRLGD 196 (314)
T ss_pred -HHHHHHHHHCC-CCCCE-EEEEECCHH-HCCHH-HHCCC-EEEECCCCCHHHHHHHHHHCCC
T ss_conf -99999986147-87856-999979936-49146-64187-5633899899999999997166
No 267
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.43 Score=26.46 Aligned_cols=74 Identities=22% Similarity=0.331 Sum_probs=50.0
Q ss_pred EEEEHHHHHHHHHHCCH--------HHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHH--CCCCEEEEECCCHHH
Q ss_conf 99984456876753103--------58999999999642013589998516544441467885--056305720368111
Q gi|254780606|r 531 IVIIVDEMADLMMVAGK--------EIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKA--NFPIRISFQVTSKID 600 (744)
Q Consensus 531 ivvviDE~a~l~~~~~~--------~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~--n~~~ri~~~v~~~~d 600 (744)
-||+|||+-.++...+. -+-..+..+-..-+.-++++|.||.||+ .|..-+.- -|.-+|-|-..+...
T Consensus 337 ~iifiDEiDs~~~~r~~~~~~~~~rv~~~ll~~~d~~e~~~~v~vi~aTN~p~--~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 337 SIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPD--DLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC--CCCHHHHCCCCCEEEEEECCCCHHH
T ss_conf 88974886667412899876379999999999974754437648996479833--2687562436630378717989899
Q ss_pred CCHHCC
Q ss_conf 003267
Q gi|254780606|r 601 SRTILG 606 (744)
Q Consensus 601 sr~il~ 606 (744)
...|+.
T Consensus 415 r~~i~~ 420 (494)
T COG0464 415 RLEIFK 420 (494)
T ss_pred HHHHHH
T ss_conf 999999
No 268
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.25 E-value=0.058 Score=32.43 Aligned_cols=36 Identities=31% Similarity=0.439 Sum_probs=22.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCC-HHHEEEEEEC
Q ss_conf 699707875344799999999998568-0110799972
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLR-PDECRMIMVD 451 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~-p~~~~~~liD 451 (744)
+-|||.+|||||++-+. |..++.+.. ...+.++-.|
T Consensus 2 IGIaG~sgSGKST~a~~-l~~~l~~~~~~~~v~ii~~D 38 (220)
T cd02025 2 IGIAGSVAVGKSTTARV-LQALLSRWPDHPNVELITTD 38 (220)
T ss_pred EEEECCCCCCHHHHHHH-HHHHHHHCCCCCCEEEEECC
T ss_conf 89788998779999999-99986002699948999787
No 269
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.24 E-value=0.092 Score=31.07 Aligned_cols=43 Identities=21% Similarity=0.441 Sum_probs=28.1
Q ss_pred CCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEE
Q ss_conf 887321120----11484699707875344799999999998568011079
Q gi|254780606|r 401 SGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRM 447 (744)
Q Consensus 401 ~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~ 447 (744)
.+++++-|+ .+.=.+.|.|.+|||||++++.| ++|+ .|.+=++
T Consensus 12 ~~~~iL~~isl~i~~Ge~v~ivG~sGsGKSTLl~ll-~gl~---~p~~G~I 58 (236)
T cd03253 12 PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLL-FRFY---DVSSGSI 58 (236)
T ss_pred CCCCEEECEEEEECCCCEEEEECCCCCCHHHHHHHH-CCCC---CCCCCEE
T ss_conf 799633056899869999999999999899999997-4385---4887489
No 270
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.22 E-value=0.051 Score=32.85 Aligned_cols=208 Identities=20% Similarity=0.249 Sum_probs=93.5
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC--CCCC----EEC--------CCCCCC-CEEEE
Q ss_conf 21120114846997078753447999999999985680110799972--3421----000--------125775-20000
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD--PKML----ELS--------VYDGIP-HLLTP 469 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD--~k~~----~~~--------~~~~~p-h~~~~ 469 (744)
|-+++.+.=-+.|.|..|||||++++. |.+|+ .|+.=++.+-+ .... .+. .|++-. .++..
T Consensus 26 Vsl~i~~Ge~~aiiG~nGsGKSTLl~~-l~Gl~---~p~~G~i~~~g~~i~~~~~~~~~~~~~~~iG~vfQ~p~~ql~~~ 101 (280)
T PRK13649 26 VNLDILDGSYTAFIGHTGSGKSTIMQL-LNGLH---VPTTGIVSVDDTDITSHSKNKEIKSIRKKVGLVFQFPESQLFEE 101 (280)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCEEEEECCEECCCCCCHHHHHHHHHHEEEEEECCCCCCCCC
T ss_conf 268987998999995999869999999-96699---98860899999998777820139999876469974652123603
Q ss_pred EEECHHHHHHHHH---HHHHHHHHHH-HHHHHCCCC-CHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEH
Q ss_conf 4444178768999---9998667699-999980778-6799---------999886420267766654323386799984
Q gi|254780606|r 470 VVTNPKKAVMALK---WAVREMEERY-RKMSHLSVR-NIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIV 535 (744)
Q Consensus 470 v~~~~~~~~~~l~---~~~~em~~r~-~~~~~~~~~-~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvvi 535 (744)
.+ .++.+-.++ .-..++++|. +.+...|.. ++.+ =.+|+.-... +.--|.| ++.
T Consensus 102 tV--~eev~fg~~~~g~~~~e~~~~v~~~l~~~gL~e~~~~r~p~~LSGGqkqRvaiA~a---------L~~~P~i-Lll 169 (280)
T PRK13649 102 TV--LKDVAFGPQNFGVSPEEAEALAREKLALVGISENLFEKNPFELSGGQMRRVAIAGI---------LAMEPKI-LVL 169 (280)
T ss_pred HH--HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHH---------HHCCCCE-EEE
T ss_conf 09--99998689886999999999999999876997466542900099999999999999---------9749999-998
Q ss_pred HHHH-HHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHC
Q ss_conf 4568-767531035899999999964201358999851654444146788505630572036811100326763168856
Q gi|254780606|r 536 DEMA-DLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLL 614 (744)
Q Consensus 536 DE~a-~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~ 614 (744)
||=. .|-....+++...|.+| +..|+-+|+.|.+.+ .+ +++--||.+=- +-++|.+..- +.++
T Consensus 170 DEPTsgLDp~~~~~i~~ll~~l----~~~G~Tii~vTHdl~--~v-----~~~aDrv~vl~----~G~iv~~G~p-~evf 233 (280)
T PRK13649 170 DEPTAGLDPKGRKELMTIFKKL----HQSGMTIVLVTHLMD--DV-----ANYADFVYVLE----KGKIVLSGKP-KDIF 233 (280)
T ss_pred ECCCCCCCHHHHHHHHHHHHHH----HHCCCEEEEECCCHH--HH-----HHHCCEEEEEE----CCEEEEECCH-HHHH
T ss_conf 4875548999999999999999----863999999875899--99-----99799999998----9999998789-9997
Q ss_pred CCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 89846864689843899934389889999999998408875
Q gi|254780606|r 615 GRGDMLYMSGGGRIQRVHGPLVSDIEIEKVVQHLKKQGCPE 655 (744)
Q Consensus 615 g~gd~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (744)
.+=|+| +...+.-..+-++...++..|.+.
T Consensus 234 ~~~~~l-----------~~~~l~~P~~~~~~~~L~~~g~~~ 263 (280)
T PRK13649 234 QQVSFL-----------EKKQLGVPKITKFAQRLVDRGIPF 263 (280)
T ss_pred CCHHHH-----------HHCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 598999-----------877999991999999999759999
No 271
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.18 E-value=0.43 Score=26.47 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=30.2
Q ss_pred ECCCCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEE
Q ss_conf 057887321120----114846997078753447999999999985680110799
Q gi|254780606|r 398 KTISGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMI 448 (744)
Q Consensus 398 ~~~~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~ 448 (744)
+...|+.++-|+ .+.-.+-|.|..|||||++++. |++++ .|+.=+++
T Consensus 19 ~~y~~~~vL~~vsl~i~~Ge~~~liG~NGaGKSTLl~~-l~gl~---~p~~G~I~ 69 (265)
T PRK10575 19 FRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKM-LGRHQ---PPSEGEIL 69 (265)
T ss_pred EEECCEEEEECEEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCCEEE
T ss_conf 99899998815088987998999999999809999999-95688---99873899
No 272
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.17 E-value=0.13 Score=30.02 Aligned_cols=153 Identities=20% Similarity=0.329 Sum_probs=67.4
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE--ECCCCCEEC--------CCCCCCC-EEEE-EEE
Q ss_conf 211201148469970787534479999999999856801107999--723421000--------1257752-0000-444
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM--VDPKMLELS--------VYDGIPH-LLTP-VVT 472 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l--iD~k~~~~~--------~~~~~ph-~~~~-v~~ 472 (744)
+-+.+.+.-.+-+.|..|+|||++|+.| ++|+ .|+.=++.+ .|.+..... .+++.-+ ++.. |..
T Consensus 20 vsl~i~~Gei~~iiG~nGaGKSTLlk~i-~Gl~---~p~~G~I~~~g~~i~~~~~~~~~~~ig~v~Q~p~~~~~~~tv~e 95 (211)
T cd03225 20 ISLTIKKGEFVLIVGPNGSGKSTLLRLL-NGLL---GPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEE 95 (211)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHH-HCCC---CCCCCCEEECCEECCCCCHHHHHCCEEEEEECCHHHCCCCCHHH
T ss_conf 1788849979999889999899999999-6467---79888778999999979989984038999778325305586999
Q ss_pred CHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHHH---------HHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHH-H
Q ss_conf 4178768999999866769-999998077867999---------9988642026776665432338679998445687-6
Q gi|254780606|r 473 NPKKAVMALKWAVREMEER-YRKMSHLSVRNIKSY---------NERISTMYGEKPQGCGDDMRPMPYIVIIVDEMAD-L 541 (744)
Q Consensus 473 ~~~~~~~~l~~~~~em~~r-~~~~~~~~~~~i~~~---------n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~-l 541 (744)
+.........+-..++.+| .+++...+..++... .+|+.-.+.- -.-|. +++.||=.- |
T Consensus 96 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGqkQrv~iAral---------~~~P~-ililDEPTsgL 165 (211)
T cd03225 96 EVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVL---------AMDPD-ILLLDEPTAGL 165 (211)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH---------HCCCC-EEEEECCCCCC
T ss_conf 999999986999999999999999986994666389545999899999999999---------75999-99997985558
Q ss_pred HHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 7531035899999999964201358999851654
Q gi|254780606|r 542 MMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 542 ~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
-.....++...|.+|.+ -|+-+|+.|.+.+
T Consensus 166 D~~~~~~i~~~l~~l~~----~g~tii~itHdl~ 195 (211)
T cd03225 166 DPAGRRELLELLKKLKA----EGKTIIIVTHDLD 195 (211)
T ss_pred CHHHHHHHHHHHHHHHH----CCCEEEEEECCHH
T ss_conf 99999999999999997----8999999925999
No 273
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=94.16 E-value=0.04 Score=33.58 Aligned_cols=64 Identities=30% Similarity=0.398 Sum_probs=43.8
Q ss_pred EEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC--CC---CCEE----CCCCCCCCEEEEEE
Q ss_conf 321120114846997078753447999999999985680110799972--34---2100----01257752000044
Q gi|254780606|r 404 SVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD--PK---MLEL----SVYDGIPHLLTPVV 471 (744)
Q Consensus 404 ~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD--~k---~~~~----~~~~~~ph~~~~v~ 471 (744)
-|-.||...=|+.|-|.+|+|||++|++ |++++ .|.+=++.|=| +. ..|+ +++..-+|+|.--|
T Consensus 379 ~V~L~l~~G~r~Ai~G~SG~GKsTLL~~-L~G~l---~P~~G~vtl~G~~~~~~~~~evrr~v~~~aQ~aHlF~ttv 451 (566)
T TIGR02868 379 GVSLDLPPGERVAILGPSGSGKSTLLAT-LAGLL---DPLQGEVTLDGVPVSSLSEDEVRRRVSVFAQDAHLFDTTV 451 (566)
T ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHH-HHHHC---CCCCCCEEECCCCHHHCCCCHHEHHEEECCCCCCCCCCCH
T ss_conf 7864113886089866887657899999-98402---8999917877732432573110000031278862110547
No 274
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=94.15 E-value=0.36 Score=27.03 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=19.3
Q ss_pred HCCC--EEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 1484--69970787534479999999999
Q gi|254780606|r 411 NMPH--ILVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 411 ~~PH--~lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
..|- +.|-|..|.|||.+|+++|-...
T Consensus 36 epPP~vVavvGPpgvGKtTLiksLvk~yt 64 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYT 64 (225)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99996999989899778899999999985
No 275
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=94.10 E-value=0.14 Score=29.78 Aligned_cols=68 Identities=26% Similarity=0.366 Sum_probs=39.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC----CCCCEE-------CCCCCCCCEEEEEEECHH--HHHHHH
Q ss_conf 6997078753447999999999985680110799972----342100-------012577520000444417--876899
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD----PKMLEL-------SVYDGIPHLLTPVVTNPK--KAVMAL 481 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD----~k~~~~-------~~~~~~ph~~~~v~~~~~--~~~~~l 481 (744)
+.|+|+|+||||.+ ...|..+ =.+.+|=+| .|+.+- .-..++||++.-++.-.+ .+...-
T Consensus 2 i~i~GpTAvGKs~L----~i~La~~---lnaEiI~~DS~qiYK~~dIgtaKp~~~e~~~ipH~l~Dildp~e~y~~~~F~ 74 (307)
T TIGR00174 2 IVIMGPTAVGKSNL----AIQLAKK---LNAEIISVDSMQIYKGMDIGTAKPSLQERKGIPHHLIDILDPSESYSAADFQ 74 (307)
T ss_pred EEEEECCCCCHHHH----HHHHHHH---CCEEEEECCCHHHHCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCHHHH
T ss_conf 67740885547789----9998876---8957874350232237875357889687534981585134712003708899
Q ss_pred HHHHHHHH
Q ss_conf 99998667
Q gi|254780606|r 482 KWAVREME 489 (744)
Q Consensus 482 ~~~~~em~ 489 (744)
..+..+|.
T Consensus 75 ~~~~~~~~ 82 (307)
T TIGR00174 75 TQALNAIA 82 (307)
T ss_pred HHHHHHHH
T ss_conf 99999999
No 276
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.10 E-value=0.47 Score=26.25 Aligned_cols=36 Identities=19% Similarity=0.394 Sum_probs=25.0
Q ss_pred HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE
Q ss_conf 1148469970787534479999999999856801107999
Q gi|254780606|r 410 ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM 449 (744)
Q Consensus 410 ~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l 449 (744)
.+.-=..+.|.-|||||++|+. |++++ .|+.=++.+
T Consensus 24 ~~G~i~~i~G~NGsGKSTLlk~-i~Gl~---~p~~G~I~~ 59 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRM-IAGIM---QPSSGNIYY 59 (195)
T ss_pred CCCCEEEEECCCCCCHHHHHHH-HHCCC---CCCCEEEEE
T ss_conf 7997999999999819999999-96798---898408999
No 277
>KOG1384 consensus
Probab=94.09 E-value=0.47 Score=26.25 Aligned_cols=53 Identities=30% Similarity=0.495 Sum_probs=31.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC----CCCCEE-------CCCCCCCCEEEEEEEC
Q ss_conf 46997078753447999999999985680110799972----342100-------0125775200004444
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD----PKMLEL-------SVYDGIPHLLTPVVTN 473 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD----~k~~~~-------~~~~~~ph~~~~v~~~ 473 (744)
-+.|.|+|||||| -+.+-|+.+..-+ +|--| .||.+. ..-.+.||++..++..
T Consensus 9 VvvI~G~TGsGKS----rLaVdLA~rf~~E---IINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~ 72 (348)
T KOG1384 9 VVVIMGATGAGKS----RLAVDLATRFPGE---IINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHP 72 (348)
T ss_pred EEEEECCCCCCHH----HHHHHHHHHCCCE---EECCCCEEEECCCCCCCCCCCHHHCCCCCHHHHCCCCH
T ss_conf 9999557777704----6678889757864---65156335632766201668755407987677076886
No 278
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA; InterPro: IPR005751 The DNA helicase PcrA is found mainly in Gram-positive bacteria and belongs to a superfamily of helicases, together with Rep and UvrD helicases from Escherichia coli. The action of the 3'5' bacterial DNA helicase is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilising the duplex and separating the two strands in an active process .; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=94.08 E-value=0.13 Score=30.05 Aligned_cols=31 Identities=32% Similarity=0.512 Sum_probs=26.7
Q ss_pred HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 11484699707875344799999999998568
Q gi|254780606|r 410 ANMPHILVAGTTGSGKSVAINTMIMSLLYRLR 441 (744)
Q Consensus 410 ~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~ 441 (744)
...|=|++||| |||||=.|-+=|..|+..+.
T Consensus 16 t~GPLLi~AGA-GSGKTRVLThRIA~L~~e~~ 46 (811)
T TIGR01073 16 TEGPLLIMAGA-GSGKTRVLTHRIAHLLAEKN 46 (811)
T ss_pred CCCCCEEEECC-CCCCCHHHHHHHHHHHHHCC
T ss_conf 37841010137-88731057899999997223
No 279
>PRK06893 DNA replication initiation factor; Validated
Probab=94.07 E-value=0.13 Score=29.96 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=23.7
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHC
Q ss_conf 148469970787534479999999999856
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRL 440 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~ 440 (744)
..+++.|.|..|+|||-+|+++.-.....+
T Consensus 38 ~~~~l~i~G~~gsGKTHLLqa~~~~~~~~~ 67 (229)
T PRK06893 38 KQPFFYIWGGKSSGKSHLLKAVSNHYLLNQ 67 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 698799989999988999999999999718
No 280
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=94.05 E-value=0.47 Score=26.19 Aligned_cols=43 Identities=28% Similarity=0.382 Sum_probs=29.0
Q ss_pred CEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE
Q ss_conf 73211201148469970787534479999999999856801107999
Q gi|254780606|r 403 ESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM 449 (744)
Q Consensus 403 ~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l 449 (744)
+-|-+++.+.=-+-|.|..|||||++++. |++++ .|+.=++.+
T Consensus 23 ~~Vs~~v~~GEi~~iiG~nGaGKSTLl~~-i~G~~---~p~~G~I~~ 65 (258)
T PRK11701 23 RDVSFDLYPGEVLGIVGESGSGKTTLLNA-LSARL---APDAGEVHY 65 (258)
T ss_pred CCEEEEECCCCEEEEECCCCCCHHHHHHH-HHCCC---CCCCCEEEE
T ss_conf 12277887997999988899889999999-85678---888873997
No 281
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.02 E-value=0.19 Score=28.87 Aligned_cols=152 Identities=15% Similarity=0.271 Sum_probs=68.1
Q ss_pred ECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC--CCC---CEE-------C-CCCCCCCEEE--EE
Q ss_conf 1120114846997078753447999999999985680110799972--342---100-------0-1257752000--04
Q gi|254780606|r 406 IADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD--PKM---LEL-------S-VYDGIPHLLT--PV 470 (744)
Q Consensus 406 ~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD--~k~---~~~-------~-~~~~~ph~~~--~v 470 (744)
-+++.+.=-+-|.|..|||||++|+. |.+|+ .|+.=++++-+ ... -++ + .|+ -++++. .|
T Consensus 21 sl~i~~Ge~~~iiGpsGsGKSTLl~~-i~gl~---~p~~G~I~~~g~~i~~~~~~~l~~~R~~ig~vfQ-~~~l~~~ltV 95 (241)
T cd03256 21 SLSINPGEFVALIGPSGAGKSTLLRC-LNGLV---EPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQ-QFNLIERLSV 95 (241)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCEEEEECCEECCCCCHHHHHHHHCCCEEECC-CCCCCCCCCH
T ss_conf 88999998999999998339999999-97499---9985599999999898998999998649189807-9978998899
Q ss_pred EECHHHHH----HHHHHH-----HHHHHHHHHHHHHCCCCCHHHH---------HHHHHHHHCCCCCCCCCCCCCCCEEE
Q ss_conf 44417876----899999-----9866769999998077867999---------99886420267766654323386799
Q gi|254780606|r 471 VTNPKKAV----MALKWA-----VREMEERYRKMSHLSVRNIKSY---------NERISTMYGEKPQGCGDDMRPMPYIV 532 (744)
Q Consensus 471 ~~~~~~~~----~~l~~~-----~~em~~r~~~~~~~~~~~i~~~---------n~~~~~~~~~~~~~~~~~~~~~p~iv 532 (744)
..+..... ..++.. ..+.++-...+...|..+.... .+|+.-.+. +-.-|.|
T Consensus 96 ~enV~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~~vgl~~~~~~~~~~LSGGq~QRVaIARA---------L~~~P~i- 165 (241)
T cd03256 96 LENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARA---------LMQQPKL- 165 (241)
T ss_pred HHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHH---------HHCCCCE-
T ss_conf 999863654133055776179959999999999997699778767844148028999999999---------8559998-
Q ss_pred EEHHHHH-HHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 9844568-767531035899999999964201358999851654
Q gi|254780606|r 533 IIVDEMA-DLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 533 vviDE~a-~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
++.||=. .|-.....++.+ -|..+.+..|+-+|+.|..++
T Consensus 166 ll~DEPts~LD~~~~~~i~~---ll~~l~~~~g~Tii~vtHdl~ 206 (241)
T cd03256 166 ILADEPVASLDPASSRQVMD---LLKRINREEGITVIVSLHQVD 206 (241)
T ss_pred EEECCCCCCCCHHHHHHHHH---HHHHHHHHCCCEEEEECCCHH
T ss_conf 99628766589999999999---999999851989999957989
No 282
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.00 E-value=0.24 Score=28.25 Aligned_cols=44 Identities=23% Similarity=0.401 Sum_probs=30.7
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 2112011484699707875344799999999998568011079997234
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK 453 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k 453 (744)
+-+++.+.-.+-+.|..|||||++|+ +|++|+ .|+.=.+ .++-+
T Consensus 41 isf~i~~GeivgilG~NGaGKSTLl~-~i~Gl~---~p~~G~I-~i~G~ 84 (224)
T cd03220 41 VSFEVPRGERIGLIGRNGAGKSTLLR-LLAGIY---PPDSGTV-TVRGR 84 (224)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHH-HHHCCC---CCCCCEE-EECCE
T ss_conf 07898389899999799981999999-997587---7787769-99989
No 283
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=93.97 E-value=0.49 Score=26.09 Aligned_cols=146 Identities=12% Similarity=0.106 Sum_probs=73.2
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHH
Q ss_conf 14846997078753447999999999985680110799972342100012577520000444417876899999986676
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEE 490 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~ 490 (744)
+.=-++|+|-.|.|||.++--+...|. .--+-+.-.++.|+++-.- ..-.+++.+..-|+.+..-|.
T Consensus 88 ~g~~~~~~gdsg~GKttllL~l~Iala--aG~~lfG~~v~epGkvlyv----------slEl~re~~L~Rl~~v~a~mg- 154 (402)
T COG3598 88 KGYVSILYGDSGVGKTTLLLYLCIALA--AGKNLFGNKVKEPGKVLYV----------SLELYREDILERLEPVRARMG- 154 (402)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH--HHHHHHCCCCCCCCEEEEE----------EECCCHHHHHHHHHHHHHHCC-
T ss_conf 170589844886237689999999998--6477745335588807999----------822686889999999998709-
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHCCCC-----CCCCCCCCCCCEEEEEHHHHHHHHHH---CCHHHHHHHHHHHHHHHC
Q ss_conf 9999998077867999998864202677-----66654323386799984456876753---103589999999996420
Q gi|254780606|r 491 RYRKMSHLSVRNIKSYNERISTMYGEKP-----QGCGDDMRPMPYIVIIVDEMADLMMV---AGKEIEGAIQRLAQMARA 562 (744)
Q Consensus 491 r~~~~~~~~~~~i~~~n~~~~~~~~~~~-----~~~~~~~~~~p~ivvviDE~a~l~~~---~~~~~e~~~~~la~~~ra 562 (744)
+.-..+||++..|...+......- ..-...+...-+-+||||-+.++... ....+...|...-+++|.
T Consensus 155 ----LsPadvrn~dltd~~Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~s~vqv~~fi~~~rkla~~ 230 (402)
T COG3598 155 ----LSPADVRNMDLTDVSGAADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYEGKSISDVQVKEFIKKTRKLARN 230 (402)
T ss_pred ----CCHHHHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf ----9857632200002456787200105899999999998747874997344542277411168999999999999986
Q ss_pred CEEEEEEEECC
Q ss_conf 13589998516
Q gi|254780606|r 563 AGIHLIMATQR 573 (744)
Q Consensus 563 ~GihlilatQr 573 (744)
.++|+|++.-.
T Consensus 231 l~caIiy~hHt 241 (402)
T COG3598 231 LECAIIYIHHT 241 (402)
T ss_pred CCCEEEEEECC
T ss_conf 27739999445
No 284
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.97 E-value=0.29 Score=27.63 Aligned_cols=152 Identities=18% Similarity=0.243 Sum_probs=69.6
Q ss_pred ECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEE--CCCC--CEEC-CCCCCCCEEE--EEEECHHHHH
Q ss_conf 112011484699707875344799999999998568011079997--2342--1000-1257752000--0444417876
Q gi|254780606|r 406 IADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMV--DPKM--LELS-VYDGIPHLLT--PVVTNPKKAV 478 (744)
Q Consensus 406 ~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~li--D~k~--~~~~-~~~~~ph~~~--~v~~~~~~~~ 478 (744)
-+++.+.--+-|.|..|||||++|+ +|.+|+ .|+.=++.+- |.+. -..+ .|++ +.++. .|..+.....
T Consensus 24 sl~i~~Ge~~~iiGpsGsGKSTLl~-~i~Gl~---~p~~G~I~~~G~~i~~~~~~ig~vfQ~-~~L~p~~tv~eni~~~l 98 (220)
T cd03293 24 SLSVEEGEFVALVGPSGCGKSTLLR-IIAGLE---RPTSGEVLVDGEPVTGPGPDRGYVFQQ-DALLPWLTVLDNVALGL 98 (220)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHH-HHHCCC---CCCCCEEEECCEECCCCCCCEEEEECC-CCCCCCCCHHHHHHHHH
T ss_conf 8898799899999999957999999-997599---988738999999678889887999248-85377887999998899
Q ss_pred HHHHHHHHHHHHH-HHHHHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHH-HHHHHCCH
Q ss_conf 8999999866769-99999807786799---------9998864202677666543233867999844568-76753103
Q gi|254780606|r 479 MALKWAVREMEER-YRKMSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMA-DLMMVAGK 547 (744)
Q Consensus 479 ~~l~~~~~em~~r-~~~~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a-~l~~~~~~ 547 (744)
....+-..++.+| .+++...|..+... -.+|++-.+.- -.-|. +++.||=. .|-.....
T Consensus 99 ~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL---------~~~P~-llllDEPts~LD~~~~~ 168 (220)
T cd03293 99 ELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARAL---------AVDPD-VLLLDEPFSALDALTRE 168 (220)
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH---------HCCCC-EEEEECCCCCCCHHHHH
T ss_conf 865999899999999999987895476189312999999999999998---------66999-99980887656999999
Q ss_pred HHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 5899999999964201358999851654
Q gi|254780606|r 548 EIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 548 ~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
..+..|...-+..|+-+|+.|...+
T Consensus 169 ---~i~~~l~~l~~~~g~tii~vTHdl~ 193 (220)
T cd03293 169 ---QLQEELLDIWRETGKTVLLVTHDID 193 (220)
T ss_pred ---HHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf ---9999999999851999999888899
No 285
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.97 E-value=0.23 Score=28.35 Aligned_cols=40 Identities=28% Similarity=0.458 Sum_probs=27.5
Q ss_pred ECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE
Q ss_conf 11201148469970787534479999999999856801107999
Q gi|254780606|r 406 IADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM 449 (744)
Q Consensus 406 ~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l 449 (744)
-+++.+.--+-|.|..|||||++++. |.+|+ .|+.=++.+
T Consensus 25 sl~i~~Ge~~~iiG~sGsGKSTLl~~-i~Gl~---~p~~G~I~~ 64 (228)
T cd03257 25 SFSIKKGETLGLVGESGSGKSTLARA-ILGLL---KPTSGSIIF 64 (228)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCCEEEE
T ss_conf 78986998999999999869999999-97289---878866998
No 286
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.94 E-value=0.29 Score=27.69 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=25.3
Q ss_pred ECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEE
Q ss_conf 1120114846997078753447999999999985680110799
Q gi|254780606|r 406 IADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMI 448 (744)
Q Consensus 406 ~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~ 448 (744)
-+++.+.-=+-+.|.-|||||++++. |++++ .|+.=++.
T Consensus 20 sl~i~~Gei~gl~G~NGaGKSTLl~~-i~Gl~---~p~~G~i~ 58 (173)
T cd03230 20 SLTVEKGEIYGLLGPNGAGKTTLIKI-ILGLL---KPDSGEIK 58 (173)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHH-HHCCC---CCCCCEEE
T ss_conf 87887993999987899799999999-97685---77878899
No 287
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.94 E-value=0.26 Score=27.96 Aligned_cols=32 Identities=13% Similarity=0.359 Sum_probs=22.7
Q ss_pred CCEEECCH----HHCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 87321120----114846997078753447999999
Q gi|254780606|r 402 GESVIADL----ANMPHILVAGTTGSGKSVAINTMI 433 (744)
Q Consensus 402 g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i 433 (744)
.+.++-|+ .+.--+.|-|..|||||++|+.|.
T Consensus 19 ~~~vL~~is~~i~~Ge~~~llGpnGaGKSTLl~~l~ 54 (192)
T cd03232 19 KRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLA 54 (192)
T ss_pred CEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHH
T ss_conf 679998838899288399999999998899999983
No 288
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.93 E-value=0.087 Score=31.25 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=33.0
Q ss_pred EECCCCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCE
Q ss_conf 2057887321120----11484699707875344799999999998568011079997234210
Q gi|254780606|r 397 GKTISGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLE 456 (744)
Q Consensus 397 g~~~~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~ 456 (744)
...-..++++.|+ .+.-++.|.|.+|||||++++. |++++ ...--.+.+--+|-+...
T Consensus 9 ~Y~~~~~~vL~ninl~i~~Ge~i~IvG~sGsGKSTLl~l-l~gl~-~p~~G~I~i~g~~i~~~~ 70 (234)
T cd03251 9 RYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNL-IPRFY-DVDSGRILIDGHDVRDYT 70 (234)
T ss_pred EECCCCCCCEECEEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC-CCCCCEEEECCEECCCCC
T ss_conf 969899673536089987999999998999829999999-96676-678868999999966089
No 289
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=93.90 E-value=0.19 Score=28.92 Aligned_cols=190 Identities=16% Similarity=0.227 Sum_probs=84.2
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC---CCEEC--------CCCCCCCEEE--EEE
Q ss_conf 2112011484699707875344799999999998568011079997234---21000--------1257752000--044
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK---MLELS--------VYDGIPHLLT--PVV 471 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k---~~~~~--------~~~~~ph~~~--~v~ 471 (744)
+-+++.+.--+-|.|..|||||+++++| ..| .+-+..++.|--.|.. ..++. .|++ .+++. .|.
T Consensus 24 Vsl~I~~Gei~giIG~SGaGKSTLlr~i-~gL-~~ptsG~I~~~G~dl~~l~~~~l~~~Rr~Ig~ifQ~-~~l~~~~tV~ 100 (343)
T PRK11153 24 VSLHVPAGQIYGVIGASGAGKSTLIRCV-NLL-ERPTSGSVIVDGQDLTTLSESELTKARRQIGMIFQH-FNLLSSRTVF 100 (343)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHH-HCC-CCCCCEEEEECCEECCCCCHHHHHHHHCCEEEEECC-CCCCCCCCHH
T ss_conf 1889989989999999998699999999-659-999963999999999879988999986386999506-6337887289
Q ss_pred ECHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCHHH-H--------HHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHH
Q ss_conf 44178768999999866769-99999807786799-9--------99886420267766654323386799984456876
Q gi|254780606|r 472 TNPKKAVMALKWAVREMEER-YRKMSHLSVRNIKS-Y--------NERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADL 541 (744)
Q Consensus 472 ~~~~~~~~~l~~~~~em~~r-~~~~~~~~~~~i~~-~--------n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l 541 (744)
.+.........|-..++++| .+++...|..+... | .+|+.-.+. +..-|.| ++.||----
T Consensus 101 env~~~l~~~~~~k~~~~~rv~elL~~vgL~~~~~~~p~~LSGGqkQRV~IArA---------La~~P~i-Ll~DEPTsa 170 (343)
T PRK11153 101 GNVALPLELDNTPKDEIKRRVTELLDLVGLGDKHDSYPANLSGGQKQRVAIARA---------LASNPKV-LLCDEATSA 170 (343)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHH---------HHCCCCE-EEEECCCCC
T ss_conf 999999997699999999999999987799447619751189999999999999---------8669999-999288765
Q ss_pred HHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEE----CCCHHHCCHHCCCCCH---HHHC
Q ss_conf 75310358999999999642013589998516544441467885056305720----3681110032676316---8856
Q gi|254780606|r 542 MMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQ----VTSKIDSRTILGEHGA---EQLL 614 (744)
Q Consensus 542 ~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~----v~~~~dsr~il~~~ga---e~l~ 614 (744)
+ ....-...+.-|..+-|-.|+-+|+-|...+ ++ + .+-.||+.- +-....-..|+..+.. ..|+
T Consensus 171 L--Dp~t~~~Il~lL~~l~~e~g~TivlITHdm~--~v----~-~icdrVaVm~~G~IVE~G~~~evf~~P~~~~tk~li 241 (343)
T PRK11153 171 L--DPATTRSILELLKDINRRLGLTILLITHEMD--VV----K-RICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFI 241 (343)
T ss_pred C--CHHHHHHHHHHHHHHHHHHCCEEEEECCCHH--HH----H-HHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHC
T ss_conf 8--9999999999999999961989999888999--99----9-869999999898899986889997389997999970
Q ss_pred CC
Q ss_conf 89
Q gi|254780606|r 615 GR 616 (744)
Q Consensus 615 g~ 616 (744)
|.
T Consensus 242 ~~ 243 (343)
T PRK11153 242 QS 243 (343)
T ss_pred CC
T ss_conf 88
No 290
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.88 E-value=0.31 Score=27.48 Aligned_cols=158 Identities=15% Similarity=0.182 Sum_probs=90.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46997078753447999999999985680110799972342100012577520000444417876899999986676999
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEERYR 493 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r~~ 493 (744)
-++|-|---.||||+|+++-+..++..+- -++-++. +..+.+|+. + ..-|.|.......|--....|.+-..
T Consensus 327 ~liITGPNtGGKTv~LKtvgL~~lMaq~G---l~vPa~e-~s~~~~f~~---i-~adIGD~QSie~~LSTFS~hm~~i~~ 398 (780)
T PRK00409 327 VLVITGPNTGGKTVTLKTLGLAALMAKSG---LPIPAAE-PSEIPVFKE---V-FADIGDEQSIEQSLSTFSGHMTNIVR 398 (780)
T ss_pred EEEEECCCCCCCEEHHHHHHHHHHHHHHC---CCCCCCC-CCCCCCCCE---E-EEEECCCHHHHHCHHHHHHHHHHHHH
T ss_conf 89996898888563799999999999829---9975168-980423463---8-99827712133265249999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECC
Q ss_conf 99980778679999988642026776665432338679998445687675310358999999999642013589998516
Q gi|254780606|r 494 KMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQR 573 (744)
Q Consensus 494 ~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQr 573 (744)
.+..++ +.-+|.+||+.- -+.+.|-..+-.-|...=+..|...|+.|-+
T Consensus 399 il~~a~-----------------------------~~sLVLlDElG~--GTDP~EGaALa~aile~l~~~~~~~i~TTH~ 447 (780)
T PRK00409 399 ILEKAD-----------------------------ENSLVLFDELGA--GTDPDEGAALAISILDYLRKRGAKIIATTHY 447 (780)
T ss_pred HHHHCC-----------------------------CCEEEEECCCCC--CCCHHHHHHHHHHHHHHHHHCCCEEEEECCH
T ss_conf 997389-----------------------------980881232358--9984565999999999999779979994776
Q ss_pred CCCCCCHHHHHHCCCCEEEEECCCH-HHCCHHCCCCCH
Q ss_conf 5444414678850563057203681-110032676316
Q gi|254780606|r 574 PSVDVITGTIKANFPIRISFQVTSK-IDSRTILGEHGA 610 (744)
Q Consensus 574 p~~~vi~~~ik~n~~~ri~~~v~~~-~dsr~il~~~ga 610 (744)
...+.+-..-..-..+-+-|-..+- =-.|.++|.+|.
T Consensus 448 ~~lK~~a~~~~~~~nas~~FD~~tl~PtYrl~~G~pG~ 485 (780)
T PRK00409 448 KELKALKYNREGVENASVEFDEETLRPTYRLLIGIPGR 485 (780)
T ss_pred HHHHHHHHCCCCCEEEEEEECCCCCCCCEEEECCCCCC
T ss_conf 99999972799818988887402378606870599976
No 291
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=93.84 E-value=0.03 Score=34.46 Aligned_cols=99 Identities=32% Similarity=0.476 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHCCCCCE-EE--EECCCCEEEEEC-------------CCCCCCEEEHHHHHCCHHHCCCCCCEEE-EEEE
Q ss_conf 85999999871477632-77--518983454426-------------8888870765875128121146783689-8420
Q gi|254780606|r 336 IGLADDIARSMSSLSAR-VA--VIPKRNAIGIEL-------------PNETRETVYLRQIIESRSFSHSKANLAL-CLGK 398 (744)
Q Consensus 336 ~~~~~d~~~~~~~~~~~-~~--~~pg~~~~~~~~-------------p~~~~~~v~~~~~~~~~~~~~~~~~l~~-~~g~ 398 (744)
.+|+.-||--|++.|-- || .||-=+-|=+.+ |=.-=+.|-|| ||++.+ ++|-| .||.
T Consensus 237 ~~l~~ri~aRiKvMS~LDIaEkR~PQDGRiKl~~sk~k~iDFRVStLPTLfGEKvVLR-iLDsS~-----a~Ldi~~LGF 310 (577)
T TIGR02538 237 LKLANRIAARIKVMSRLDIAEKRIPQDGRIKLKLSKSKAIDFRVSTLPTLFGEKVVLR-ILDSSA-----AKLDIDKLGF 310 (577)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCEEEEE-EECHHH-----CCCCCHHHCC
T ss_conf 8899999989999732671224568787367753784455125378742024446677-655221-----2267422068
Q ss_pred CCCCCEEECCHHHCC--CEEEEECCCCCHHHHHHHHHHHHHHHCCHH
Q ss_conf 578873211201148--469970787534479999999999856801
Q gi|254780606|r 399 TISGESVIADLANMP--HILVAGTTGSGKSVAINTMIMSLLYRLRPD 443 (744)
Q Consensus 399 ~~~g~~~~~dl~~~P--H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~ 443 (744)
.-+=+-.+.+=-+-| -+||-|=|||||||-|.|-+-. -|+++
T Consensus 311 eP~Qk~~fL~Ai~kPqGMvLVTGPTGSGKTVSLYTaLni---LN~~~ 354 (577)
T TIGR02538 311 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNI---LNTEE 354 (577)
T ss_pred CHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCC---CCCCC
T ss_conf 888999999997079972886266598416878763112---57767
No 292
>PRK12608 transcription termination factor Rho; Provisional
Probab=93.79 E-value=0.53 Score=25.88 Aligned_cols=54 Identities=9% Similarity=0.168 Sum_probs=41.9
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCC
Q ss_conf 011484699707875344799999999998568011079997234210001257
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDG 462 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~ 462 (744)
+.|.=-.||..-.++|||++|+.|..++...|+--++-.+|||-.--|-+.+..
T Consensus 129 IGkGQRgLIVAPPkaGKT~LLq~IA~aI~~NhPev~livLLIDERPEEVTdm~r 182 (379)
T PRK12608 129 IGKGQRGLIVAPPRAGKTILLQQIAQAVAANHPDIHLMVLLIDERPEEVTDMKR 182 (379)
T ss_pred CCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH
T ss_conf 345740127458986578999999999985799848999981689358888886
No 293
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=93.78 E-value=0.53 Score=25.86 Aligned_cols=46 Identities=17% Similarity=0.335 Sum_probs=29.8
Q ss_pred CEEEEEHHHHHHHHHHCC----------HHHHHHHHHHHHHHHCCEEEEEEEECCC
Q ss_conf 679998445687675310----------3589999999996420135899985165
Q gi|254780606|r 529 PYIVIIVDEMADLMMVAG----------KEIEGAIQRLAQMARAAGIHLIMATQRP 574 (744)
Q Consensus 529 p~ivvviDE~a~l~~~~~----------~~~e~~~~~la~~~ra~GihlilatQrp 574 (744)
+.-+||||-++.+..... ...-..+..|-.+|+..++-+|+..|==
T Consensus 138 ~v~LvVvDSiaalfR~e~~g~~~l~~R~~~L~~~l~~L~~lA~~~~~aVvvTNQV~ 193 (261)
T pfam08423 138 RFALLIVDSATALYRTDFSGRGELAERQQHLAKFLRSLQRLADEFGVAVVITNQVV 193 (261)
T ss_pred CCEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 83499983240023330036752899999999999999999998095899960479
No 294
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.75 E-value=0.54 Score=25.82 Aligned_cols=186 Identities=22% Similarity=0.269 Sum_probs=91.8
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEE--EEEECCCC-CEEC--------------CCCCCCCEE
Q ss_conf 211201148469970787534479999999999856801107--99972342-1000--------------125775200
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECR--MIMVDPKM-LELS--------------VYDGIPHLL 467 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~--~~liD~k~-~~~~--------------~~~~~ph~~ 467 (744)
|-+++.+.=-+-|.|.+|||||++.++++ .|+-. .+..+. =+++|-+. ..++ +|++--.-+
T Consensus 24 vs~~i~~GE~lgiVGESGsGKS~~~~aim-~llp~-~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sL 101 (316)
T COG0444 24 VSFELKKGEILGIVGESGSGKSVLAKAIM-GLLPK-PNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSL 101 (316)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHH-HCCCC-CCCEEEEEEEEECCCCCCCCCHHHHHHHCCCEEEEEECCCHHHC
T ss_conf 05887589689998389788999999998-46688-89748611899889646669999998631756899974815644
Q ss_pred EEEEECHHHHHHHHHHHH-----HH-HHHHHHHHHHCCCCCHHH-HHHHHHHHHCCCCCCCCCC--------CCCCCEEE
Q ss_conf 004444178768999999-----86-676999999807786799-9998864202677666543--------23386799
Q gi|254780606|r 468 TPVVTNPKKAVMALKWAV-----RE-MEERYRKMSHLSVRNIKS-YNERISTMYGEKPQGCGDD--------MRPMPYIV 532 (744)
Q Consensus 468 ~~v~~~~~~~~~~l~~~~-----~e-m~~r~~~~~~~~~~~i~~-~n~~~~~~~~~~~~~~~~~--------~~~~p~iv 532 (744)
.|+.+=-+.....++... +| +++-.++|...|..+-+. +|. +.+.-..|.- +..-|.|
T Consensus 102 nPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~------YPhelSGGMrQRV~IAmal~~~P~L- 174 (316)
T COG0444 102 NPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKS------YPHELSGGMRQRVMIAMALALNPKL- 174 (316)
T ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH------CCCCCCCCHHHHHHHHHHHHCCCCE-
T ss_conf 970349999999999851411368999999999997699987899861------9835587189999999998589988-
Q ss_pred EEHHHHHH-HHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEE----EECCCHHHCCHHCCC
Q ss_conf 98445687-6753103589999999996420135899985165444414678850563057----203681110032676
Q gi|254780606|r 533 IIVDEMAD-LMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRIS----FQVTSKIDSRTILGE 607 (744)
Q Consensus 533 vviDE~a~-l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~----~~v~~~~dsr~il~~ 607 (744)
+|-||=-. |-.+....+-+.|.+| -+-.|.-|||-|-... | -+.+--||+ -++-.......|+..
T Consensus 175 lIADEPTTALDvtvQaqIl~ll~~l---~~e~~~siilITHDl~--v-----va~~aDrv~VMYaG~iVE~g~~~~i~~~ 244 (316)
T COG0444 175 LIADEPTTALDVTVQAQILDLLKEL---QREKGTALILITHDLG--V-----VAEIADRVAVMYAGRIVEEGPVEEIFKN 244 (316)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHH---HHHCCCEEEEEECCHH--H-----HHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 9967986045199999999999999---9854978999948889--9-----9974566899877589986788887438
Q ss_pred CC
Q ss_conf 31
Q gi|254780606|r 608 HG 609 (744)
Q Consensus 608 ~g 609 (744)
+-
T Consensus 245 P~ 246 (316)
T COG0444 245 PK 246 (316)
T ss_pred CC
T ss_conf 99
No 295
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.75 E-value=0.08 Score=31.48 Aligned_cols=40 Identities=25% Similarity=0.486 Sum_probs=31.0
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 011484699707875344799999999998568011079997234
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK 453 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k 453 (744)
+.+.-+++|.|.|||||+.+||+++.- =|.+.+++-|+=.
T Consensus 140 ie~~~siii~G~t~sGKTt~lnall~~-----Ip~~~rivtIEdt 179 (312)
T COG0630 140 IEARKSIIICGGTASGKTTLLNALLDF-----IPPEERIVTIEDT 179 (312)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHH-----CCCCCCEEEECCC
T ss_conf 976994999888888649599999863-----7852218995255
No 296
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.71 E-value=0.22 Score=28.49 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=44.8
Q ss_pred CCCEEEEEEECCCC--CEEECCHHHCC--CEEEEECCCCCHHHHHHHHHHHHHHHCC-HHHEEEEEECCC
Q ss_conf 78368984205788--73211201148--4699707875344799999999998568-011079997234
Q gi|254780606|r 389 KANLALCLGKTISG--ESVIADLANMP--HILVAGTTGSGKSVAINTMIMSLLYRLR-PDECRMIMVDPK 453 (744)
Q Consensus 389 ~~~l~~~~g~~~~g--~~~~~dl~~~P--H~lvaG~TgsGKS~~l~~~i~sl~~~~~-p~~~~~~liD~k 453 (744)
.+.|++-+|+-..| +|.+-||...- ..|+-|-.|+||+.+|+-|-.-+.+--+ =-..+..+||-.
T Consensus 110 I~slniRv~r~v~Gt~~~li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDer 179 (308)
T COG3854 110 ISSLNIRVARQVFGTANPLIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDER 179 (308)
T ss_pred ECEEEEEEHHHHHCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf 0204554114565562188999984372246996599887077999999986315112677328997150
No 297
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.71 E-value=0.55 Score=25.77 Aligned_cols=191 Identities=15% Similarity=0.181 Sum_probs=90.4
Q ss_pred HHCCC-EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC-CCCCEECCCCCCCCEEEEEEECH-HHHHHHHHHHHH
Q ss_conf 11484-6997078753447999999999985680110799972-34210001257752000044441-787689999998
Q gi|254780606|r 410 ANMPH-ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD-PKMLELSVYDGIPHLLTPVVTNP-KKAVMALKWAVR 486 (744)
Q Consensus 410 ~~~PH-~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD-~k~~~~~~~~~~ph~~~~v~~~~-~~~~~~l~~~~~ 486 (744)
.+.+| +|+.|..|.||+.+.+.+...|+- ..|+.-+ -++ ++.-.+..-..-|.+. +++.. .+.
T Consensus 20 ~r~~HA~L~~G~~G~Gk~~la~~~a~~llC-~~~~~~~--~Cg~C~sC~l~~~g~HPD~~--~i~~~~~k~--------- 85 (324)
T PRK06871 20 GRGHHALLFKADSGLGTEQLIRALAQWLMC-QAPGDEQ--PCGQCHSCHLFQAGNHPDFH--ILEPIDGKD--------- 85 (324)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHC-CCCCCCC--CCCCCHHHHHHHCCCCCCEE--EEECCCCCC---------
T ss_conf 995437876899997899999999999828-9999999--88889899999738999879--984678887---------
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEE
Q ss_conf 66769999998077867999998864202677666543233867999844568767531035899999999964201358
Q gi|254780606|r 487 EMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIH 566 (744)
Q Consensus 487 em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gih 566 (744)
.++..|...+..+..... . -.+-|++||+ ||.|.... ..++-..-- -=..+.+
T Consensus 86 -----------I~vd~IR~l~~~~~~~~~---~--------g~~KV~iI~~-ae~m~~~A---aNALLKtLE-EPp~~~~ 138 (324)
T PRK06871 86 -----------IGVDQVREINEKVSQFAQ---Q--------GGNKVVYIQG-AERLTEAA---ANALLKTLE-EPRPNTY 138 (324)
T ss_pred -----------CCHHHHHHHHHHHHHCCC---C--------CCCEEEEECC-HHHHHHHH---HHHHHHHHC-CCCCCEE
T ss_conf -----------889999999999864622---0--------5966999758-88857999---999999833-8987838
Q ss_pred EEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCC-CCE--EEECCCCCEEEEEECCCCHHHHHH
Q ss_conf 99985165444414678850563057203681110032676316885689-846--864689843899934389889999
Q gi|254780606|r 567 LIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGR-GDM--LYMSGGGRIQRVHGPLVSDIEIEK 643 (744)
Q Consensus 567 lilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~-gd~--l~~~~~~~~~r~~~~~~~~~~~~~ 643 (744)
+||.|.+|+ .+++ .|+.-.- ++-|+..+..+...-|-+.+ -+. .+. .....+|.+.++. .|+.++..+.
T Consensus 139 fiL~t~~~~-~ll~-TI~SRCq-~~~~~~p~~~~~~~wL~~~~----~~~~~~~~~al~~~~g~pl~A~-~~~~~~~~~~ 210 (324)
T PRK06871 139 FLLQADLSA-SLLA-TIYSRCQ-TWLIHVPEEQIALDWLQAQS----SGEIQEIQTALRINYGRPLLAL-TFLEQGLLEQ 210 (324)
T ss_pred EEEEECCCC-CCCC-HHHHCCC-CEECCCCCHHHHHHHHHHHC----CCCHHHHHHHHHHCCCCHHHHH-HHHCCCHHHH
T ss_conf 999878701-0324-0862661-20089949999999999746----8872999999997699879999-9868779999
Q ss_pred HHHHHH
Q ss_conf 999998
Q gi|254780606|r 644 VVQHLK 649 (744)
Q Consensus 644 ~~~~~~ 649 (744)
--.+++
T Consensus 211 r~~~~~ 216 (324)
T PRK06871 211 RKTFLR 216 (324)
T ss_pred HHHHHH
T ss_conf 999999
No 298
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=93.70 E-value=0.55 Score=25.77 Aligned_cols=45 Identities=22% Similarity=0.161 Sum_probs=30.6
Q ss_pred EEEEEEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 6898420578873211201148469970787534479999999999
Q gi|254780606|r 392 LALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 392 l~~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
|.+-.|-...=+-+-+++.+.=++.+.|..|||||++++. |.+++
T Consensus 9 lt~~~g~~~~L~~vsl~i~~Ge~~~LvG~NGaGKSTL~k~-l~G~l 53 (490)
T PRK10938 9 GTFRLSDTKTLQLPSLTLNAGDSWAFVGSNGSGKSALARA-LAGEL 53 (490)
T ss_pred EEEEECCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC
T ss_conf 9999899888931598998998999997999779999999-95699
No 299
>KOG0951 consensus
Probab=93.70 E-value=0.03 Score=34.46 Aligned_cols=95 Identities=18% Similarity=0.264 Sum_probs=60.6
Q ss_pred EECCCCEEEEECCCCC-------CCEEEHHHH--HCCHHHCCCCCCEEEEEEECCCCCEEECCHHHCCCEEEEECCCCCH
Q ss_conf 5189834544268888-------870765875--1281211467836898420578873211201148469970787534
Q gi|254780606|r 355 VIPKRNAIGIELPNET-------RETVYLRQI--IESRSFSHSKANLALCLGKTISGESVIADLANMPHILVAGTTGSGK 425 (744)
Q Consensus 355 ~~pg~~~~~~~~p~~~-------~~~v~~~~~--~~~~~~~~~~~~l~~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGK 425 (744)
..-||++--|-||... -..+.+.++ |....|....+ | -+|.+...-.-|...-|+|+.|-||+||
T Consensus 265 rl~kk~yeevhVPa~~~~pf~~~Ekl~~iselP~Wnq~aF~g~~s-L-----NrIQS~V~daAl~~~EnmLlCAPTGaGK 338 (1674)
T KOG0951 265 RLKKKGYEEVHVPAPSYFPFHKEEKLVKISELPKWNQPAFFGKQS-L-----NRIQSKVYDAALRGDENMLLCAPTGAGK 338 (1674)
T ss_pred EEECCCCEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHCCCCHH-H-----HHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf 985588628967788888877662468604783110243034045-6-----6788777788755767378742678882
Q ss_pred HH-HHHHHHHHHHHHCCHHHEEEEEECCCCCE
Q ss_conf 47-99999999998568011079997234210
Q gi|254780606|r 426 SV-AINTMIMSLLYRLRPDECRMIMVDPKMLE 456 (744)
Q Consensus 426 S~-~l~~~i~sl~~~~~p~~~~~~liD~k~~~ 456 (744)
|+ .+.+||--| -.|.-.+..+.|-.+|.+-
T Consensus 339 TNVAvLtiLqel-~~h~r~dgs~nl~~fKIVY 369 (1674)
T KOG0951 339 TNVAVLTILQEL-GNHLREDGSVNLAPFKIVY 369 (1674)
T ss_pred HHHHHHHHHHHH-HCCCCCCCCEECCCCEEEE
T ss_conf 379999999998-5354544541025613799
No 300
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=93.68 E-value=0.35 Score=27.06 Aligned_cols=150 Identities=19% Similarity=0.310 Sum_probs=66.7
Q ss_pred CCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEE-----CCCC------------CEECCCCCCCCEEEE
Q ss_conf 12011484699707875344799999999998568011079997-----2342------------100012577520000
Q gi|254780606|r 407 ADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMV-----DPKM------------LELSVYDGIPHLLTP 469 (744)
Q Consensus 407 ~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~li-----D~k~------------~~~~~~~~~ph~~~~ 469 (744)
+++.+.--+-+.|-.|||||++|+. |.+|. .|+.=++.+- |.+. .-|-.|.-+||+-
T Consensus 19 l~i~~g~i~~l~GpsGaGKTTLl~~-iaGl~---~p~~G~I~~~g~~~~~~~~~~~l~~~~r~ig~vfQ~~~Lfphlt-- 92 (352)
T PRK11144 19 LTLPAQGITAIFGRSGAGKTSLINL-ISGLT---RPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK-- 92 (352)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCEEEEECCEECCCCCCCCCCCHHHCCEEEEECCCCCCCCCC--
T ss_conf 9988998999999999629999999-97689---99965999999998555410137676688689935763377768--
Q ss_pred EEECHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCHHHHHHHHHHHHCCCCCCCC---CCCCCCCEEEEEHHH-HHHHHHH
Q ss_conf 44441787689999998667699-999980778679999988642026776665---432338679998445-6876753
Q gi|254780606|r 470 VVTNPKKAVMALKWAVREMEERY-RKMSHLSVRNIKSYNERISTMYGEKPQGCG---DDMRPMPYIVIIVDE-MADLMMV 544 (744)
Q Consensus 470 v~~~~~~~~~~l~~~~~em~~r~-~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~---~~~~~~p~ivvviDE-~a~l~~~ 544 (744)
|..+... .++ +++..+. +++...+..+ +-.|....-+...+... .-+-.-|.| ++.|| ++.|-..
T Consensus 93 V~~Nl~~---g~~---~~~~~~~~~~~~~l~l~~---l~~r~p~~LSGGq~QRvaiARAL~~~P~l-LllDEP~s~LD~~ 162 (352)
T PRK11144 93 VRGNLRY---GMA---KSMPAQFDKIVSLLGIEP---LLDRYPGSLSGGEKQRVAIGRALLTAPEL-LLMDEPLASLDLP 162 (352)
T ss_pred HHHHHHH---HCH---HHHHHHHHHHHHHCCCHH---HHHCCHHHCCCCHHHHHHHHHHHHCCCCE-EEECCCCCCCCHH
T ss_conf 8996651---000---565999999997759956---76278646592452349999987249999-9987840027977
Q ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 1035899999999964201358999851654
Q gi|254780606|r 545 AGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 545 ~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
... ..+..|.++.+..|+-+|+-|-..+
T Consensus 163 ~~~---~i~~~l~~l~~~~~~til~VTHd~~ 190 (352)
T PRK11144 163 RKR---ELLPYLERLAQEINIPILYVSHSLD 190 (352)
T ss_pred HHH---HHHHHHHHHHHHHCCEEEEEECCHH
T ss_conf 999---9999999999973988999939999
No 301
>pfam02572 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin adenosyltransferase, EC:2.5.1.17, involved in cobalamin (vitamin B12) biosynthesis. These enzymes catalyse the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.65 E-value=0.56 Score=25.71 Aligned_cols=134 Identities=18% Similarity=0.296 Sum_probs=69.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECC-CC----CEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHH
Q ss_conf 69970787534479999999999856801107999723-42----10001257752000044441787689999998667
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDP-KM----LELSVYDGIPHLLTPVVTNPKKAVMALKWAVREME 489 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~-k~----~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~ 489 (744)
+.|.=..|-||| |..+++++|..-...+.++|-| |+ +|+..+..++.+-. ...... . -|-....+
T Consensus 6 i~iytG~GKGKT----TAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~~v~~-~~~g~g----f-~~~~~~~~ 75 (172)
T pfam02572 6 LIVYTGNGKGKS----TAAFGMALRALGHGMRVGVVQFIKGKWETGEEAALEALPEVEW-HVMGEG----F-TWETQDRE 75 (172)
T ss_pred EEEEECCCCCHH----HHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHCCCCEE-EECCCC----C-CCCCCCCH
T ss_conf 999957999718----8999999998259988999999538877638999987899689-978899----8-58788878
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEE
Q ss_conf 69999998077867999998864202677666543233867999844568767531035899999999964201358999
Q gi|254780606|r 490 ERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIM 569 (744)
Q Consensus 490 ~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihlil 569 (744)
+..+. ++ ..++....... .-.|=+||.||+...+...--..+..+ .+. +.|.-++||||
T Consensus 76 ~d~~~-a~------~~~~~a~~~l~------------~~~~dlvVLDEi~~ai~~gli~~~~v~-~~l-~~rp~~~evVl 134 (172)
T pfam02572 76 RDIAA-AR------EAWEKAKEALA------------SGSYDLVVLDELNYALKYGYLDLEEVL-ELL-RNRPEGQHVVL 134 (172)
T ss_pred HHHHH-HH------HHHHHHHHHHH------------CCCCCEEEEHHHHHHHHCCCCCHHHHH-HHH-HHCCCCCEEEE
T ss_conf 89999-99------99999999975------------889899973557999755996899999-999-82899877999
Q ss_pred EECCCCCCCC
Q ss_conf 8516544441
Q gi|254780606|r 570 ATQRPSVDVI 579 (744)
Q Consensus 570 atQrp~~~vi 579 (744)
.-..+....+
T Consensus 135 TGr~~p~~L~ 144 (172)
T pfam02572 135 TGRGAPPELI 144 (172)
T ss_pred ECCCCCHHHH
T ss_conf 8999999999
No 302
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein; InterPro: IPR011924 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents LolD, a member of the ABC transporter family. LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on the residue immediately following the modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. Excluded from this entry are homologs from the archaeal genus Methanosarcina .; GO: 0005524 ATP binding, 0006810 transport, 0016020 membrane.
Probab=93.65 E-value=0.048 Score=33.01 Aligned_cols=168 Identities=18% Similarity=0.243 Sum_probs=87.5
Q ss_pred HCCCCCCEEEEEEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCC---------
Q ss_conf 11467836898420578873211201148469970787534479999999999856801107999723421---------
Q gi|254780606|r 385 FSHSKANLALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKML--------- 455 (744)
Q Consensus 385 ~~~~~~~l~~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~--------- 455 (744)
|+..+..+-|.=| |=+++.+.-++-|-|..|||||++|+ ++-+| =.=+.-+|-|.--+....
T Consensus 11 Y~~G~~~~~vL~g-------~sl~i~~GE~~~IvG~SGSGKSTLLH-lLGGL-D~PT~G~v~f~G~~l~~lS~~~~~~LR 81 (221)
T TIGR02211 11 YQEGKLQTRVLKG-------VSLSIGKGEIVAIVGSSGSGKSTLLH-LLGGL-DNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEECCEEEEEECC-------CCCEEECCCEEEEECCCCCCHHHHHH-HHHCC-CCCCCCEEEECCCCHHHCCHHHHHHHH
T ss_conf 5408623665227-------45123066337987367871689999-87306-899631589706323440446788751
Q ss_pred --EECCCCCCCCEEEEEEECHHHHHHHH----HHHHHHHHHHHHHHHHCCCCCHHHH---------HHHHHHHHCCCCCC
Q ss_conf --00012577520000444417876899----9999866769999998077867999---------99886420267766
Q gi|254780606|r 456 --ELSVYDGIPHLLTPVVTNPKKAVMAL----KWAVREMEERYRKMSHLSVRNIKSY---------NERISTMYGEKPQG 520 (744)
Q Consensus 456 --~~~~~~~~ph~~~~v~~~~~~~~~~l----~~~~~em~~r~~~~~~~~~~~i~~~---------n~~~~~~~~~~~~~ 520 (744)
.|.+-...-||+. =.|-.+..+.=+ +...+--++-|+++.+.|-.+-..+ ++|++.+|+-..
T Consensus 82 N~~LGFiYQFHHLL~-dFtaLENVaMP~LIg~~s~~ea~~~A~~mL~~VgL~~R~~h~PSELSGGERQRvAIARALvN-- 158 (221)
T TIGR02211 82 NKKLGFIYQFHHLLP-DFTALENVAMPLLIGKKSKKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVN-- 158 (221)
T ss_pred HHHCCCEEEHHHCCC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHC--
T ss_conf 222584443202030-00026887777753589988999999999886073344555777345633799999998618--
Q ss_pred CCCCCCCCCEEEEEHHHHHH-HHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 65432338679998445687-67531035899999999964201358999851654
Q gi|254780606|r 521 CGDDMRPMPYIVIIVDEMAD-LMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 521 ~~~~~~~~p~ivvviDE~a~-l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
-|.+| +-||=-- |=. .-....++-|..+=|..|+=+|+.|--..
T Consensus 159 -------~P~lv-lADEPTGNLD~---~~a~~iF~L~~eLN~~~~TsflvVTHD~~ 203 (221)
T TIGR02211 159 -------QPSLV-LADEPTGNLDN---NNAKSIFELMLELNRELNTSFLVVTHDLE 203 (221)
T ss_pred -------CCCEE-ECCCCCCHHHH---HHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf -------97658-61298853237---77999999999988653916999834757
No 303
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=93.62 E-value=0.33 Score=27.30 Aligned_cols=67 Identities=27% Similarity=0.433 Sum_probs=39.4
Q ss_pred HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC----CCEE-------CCCCCCCCEEEEEEECHHHHH
Q ss_conf 11484699707875344799999999998568011079997234----2100-------012577520000444417876
Q gi|254780606|r 410 ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK----MLEL-------SVYDGIPHLLTPVVTNPKKAV 478 (744)
Q Consensus 410 ~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k----~~~~-------~~~~~~ph~~~~v~~~~~~~~ 478 (744)
.+.+=++|+|.||||||-+-. .|+-+. ...++=+|-. +..- ....++||++..++. +.+--
T Consensus 2 ~~~~ii~i~GpTasGKs~la~----~la~~~---~~eIIsaDS~QvYk~l~IgTakps~~e~~~i~Hhli~~~~-~~e~~ 73 (304)
T PRK00091 2 MKPKLIVLVGPTASGKTALAI----ELAKRL---NGEIISVDSMQVYRGMDIGTAKPTAEELAGVPHHLIDILD-PTESY 73 (304)
T ss_pred CCCCEEEEECCCCCCHHHHHH----HHHHHC---CCEEEEECHHHHHCCCCEEECCCCHHHHCCCCCEEEEEEC-CCCCE
T ss_conf 999779998988658999999----999987---9989941268874999868899999998189812434565-88754
Q ss_pred HHHHHH
Q ss_conf 899999
Q gi|254780606|r 479 MALKWA 484 (744)
Q Consensus 479 ~~l~~~ 484 (744)
.+-.|.
T Consensus 74 sv~~f~ 79 (304)
T PRK00091 74 SAADFQ 79 (304)
T ss_pred EHHHHH
T ss_conf 499999
No 304
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=93.61 E-value=0.17 Score=29.30 Aligned_cols=169 Identities=20% Similarity=0.332 Sum_probs=92.3
Q ss_pred EECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC-------CC----CCEECCCCCCCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 7078753447999999999985680110799972-------34----210001257752000044441787689999998
Q gi|254780606|r 418 AGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD-------PK----MLELSVYDGIPHLLTPVVTNPKKAVMALKWAVR 486 (744)
Q Consensus 418 aG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD-------~k----~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~ 486 (744)
=|..|||||++|+ +|.++- .||.=+++|-. |. +.=|--|.-.||.- |..|.-.-...-+.=..
T Consensus 2 LGpSGcGKTTlLr-lLAGf~---~pd~G~i~ldg~d~~~vPp~~R~in~vFQsYALFPHMT--v~~NvAfgLk~~k~~~~ 75 (331)
T TIGR01187 2 LGPSGCGKTTLLR-LLAGFE---QPDSGSIMLDGEDVTEVPPHLRSINMVFQSYALFPHMT--VEENVAFGLKMRKVPRA 75 (331)
T ss_pred CCCCCCCHHHHHH-HHHCCC---CCCCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCC--HHHHCCCCCCCCCCCHH
T ss_conf 7888874799999-983458---77755077567101215722061460573543562122--77645444351788856
Q ss_pred HHHHHH------HHHHHCCCCCHHH----HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHH-HHHHHHHCCHHHHHHHH-
Q ss_conf 667699------9999807786799----99988642026776665432338679998445-68767531035899999-
Q gi|254780606|r 487 EMEERY------RKMSHLSVRNIKS----YNERISTMYGEKPQGCGDDMRPMPYIVIIVDE-MADLMMVAGKEIEGAIQ- 554 (744)
Q Consensus 487 em~~r~------~~~~~~~~~~i~~----~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE-~a~l~~~~~~~~e~~~~- 554 (744)
|...|- -.|.+++.|.+.. =.+|++-.++-.. -|.|++ .|| +..|= +..-+.++
T Consensus 76 ei~~RV~e~L~~V~L~~~a~rkp~qLSGGQ~QRvAlARa~v~---------kPk~LL-lDEpLsALD----~kLR~~MQ~ 141 (331)
T TIGR01187 76 EIKPRVKEALRLVQLEEFAKRKPHQLSGGQQQRVALARALVF---------KPKILL-LDEPLSALD----KKLRDQMQL 141 (331)
T ss_pred HHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHHHHC---------CCCEEE-ECCCHHHHH----HHHHHHHHH
T ss_conf 688999999742130011046731046852899999999860---------895677-117722643----898998899
Q ss_pred HHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEE----ECCCHHHCCHHCCCCCHHHH
Q ss_conf 999964201358999851654444146788505630572----03681110032676316885
Q gi|254780606|r 555 RLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISF----QVTSKIDSRTILGEHGAEQL 613 (744)
Q Consensus 555 ~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~----~v~~~~dsr~il~~~gae~l 613 (744)
.|-.+-|.+||=.|+-|--=+ ..||. .-||+. +..--.++++|-.++--+.-
T Consensus 142 ELk~~~~~LGiT~v~VTHDQ~-EA~TM------sDRI~~l~~Gki~Q~~~PeeiY~~P~~~Fv 197 (331)
T TIGR01187 142 ELKTLQEQLGITFVFVTHDQE-EALTM------SDRIAILRKGKIAQIGTPEEIYEEPSNLFV 197 (331)
T ss_pred HHHHHHHHCCCEEEEEECCHH-HHHHH------HCEEEEECCCEEEEECCCHHHHHCCCCCCC
T ss_conf 999998726828999701848-98754------020242138758883684687517775310
No 305
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=93.59 E-value=0.32 Score=27.39 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=24.1
Q ss_pred CEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 7321120114846997078753447999999999
Q gi|254780606|r 403 ESVIADLANMPHILVAGTTGSGKSVAINTMIMSL 436 (744)
Q Consensus 403 ~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl 436 (744)
+-+-+++.+.=.+-+.|..|||||++++. |++|
T Consensus 280 ~~vsf~v~~GEi~gl~G~nGsGKsTL~~~-l~Gl 312 (510)
T PRK09700 280 RDISFSVCRGEILGFAGLVGSGRTELMNC-LFGV 312 (510)
T ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHH-HHCC
T ss_conf 43357874881899976888628899999-8198
No 306
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein; InterPro: IPR005968 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Thiamine pyrophosphate (TPP) is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and alpha-ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism. The model describes thiamine ABC transporter, ATP-binding protein, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane The protein belongs to the larger ABC transport system which consists of at least three components: the inner membrane permease; thiamine binding protein and an ATP-binding subunit. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate or thiamine pyrophosphate. ; GO: 0005524 ATP binding, 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=93.59 E-value=0.11 Score=30.49 Aligned_cols=162 Identities=22% Similarity=0.297 Sum_probs=93.7
Q ss_pred CCCCEEECCHH--HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCC-----------CCCE
Q ss_conf 78873211201--1484699707875344799999999998568011079997234210001257-----------7520
Q gi|254780606|r 400 ISGESVIADLA--NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDG-----------IPHL 466 (744)
Q Consensus 400 ~~g~~~~~dl~--~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~-----------~ph~ 466 (744)
-...|+.|||. ..-.+-|-|-.|+|||++|| +|.+.+ .|-.=.+.+=|-.-...++|+. .+||
T Consensus 10 y~hlpm~F~L~V~~Ge~VAi~GpSGAGKSTLLn-LiAGF~---~PasG~i~~nd~~~t~~aPy~RPvSMLFQEnNLF~HL 85 (213)
T TIGR01277 10 YKHLPMEFDLSVEDGERVAILGPSGAGKSTLLN-LIAGFL---EPASGEIKVNDKDHTRLAPYRRPVSMLFQENNLFAHL 85 (213)
T ss_pred CCCCCEEEECCCCCCCEEEEECCCCCCHHHHHH-HHHHHC---CCCCEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCH
T ss_conf 356740450413017768887589862788987-786404---7764058877801226888777750343221025302
Q ss_pred EEEEEECHHHHHHH----HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCC----CCCCCCCEEEEEHHH-
Q ss_conf 00044441787689----999998667699999980778679999988642026776665----432338679998445-
Q gi|254780606|r 467 LTPVVTNPKKAVMA----LKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCG----DDMRPMPYIVIIVDE- 537 (744)
Q Consensus 467 ~~~v~~~~~~~~~~----l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~----~~~~~~p~ivvviDE- 537 (744)
|=.+...-- |+--. ..+.++..-+..--|++|=+|....-+..-+... +-+++-| | ...||
T Consensus 86 -----TV~~NigLGl~PgLKLnA---~q~ek~~~~A~qvGi~dyl~RLP~~LSGGQrQRVALARClvr~~P-I-lLLDEP 155 (213)
T TIGR01277 86 -----TVRQNIGLGLKPGLKLNA---VQQEKVEDVARQVGIDDYLERLPEELSGGQRQRVALARCLVREKP-I-LLLDEP 155 (213)
T ss_pred -----HHHHHHHCCCCCCCCCCH---HHHHHHHHHHHHCCHHHHHHHCCHHCCCCHHHHHHHHHHHCCCCC-C-CCCCCC
T ss_conf -----488886537886410156---778999999973385789872501116733789999886417887-3-001588
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCC
Q ss_conf 687675310358999999999642013589998516544441
Q gi|254780606|r 538 MADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVI 579 (744)
Q Consensus 538 ~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi 579 (744)
|..|- ++-=+++++-+++.+-.--+-|++-|-.++ |.+
T Consensus 156 FSALD---p~LR~EMLaLv~~lc~e~~~TllmVtH~~s-da~ 193 (213)
T TIGR01277 156 FSALD---PKLREEMLALVKKLCDEKKLTLLMVTHSLS-DAA 193 (213)
T ss_pred HHHCC---HHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHH
T ss_conf 11226---788999999999765103646899845889-998
No 307
>TIGR01074 rep ATP-dependent DNA helicase Rep; InterPro: IPR005752 RepA hexameric DNA helicase contain ATP-binding domains similar to those seen in monomeric helicases but which are arranged in a ring. There is compelling evidence to suggest that a single ssDNA molecule passes through the centre of the hexameric ring. Activity of the enzyme is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilizing the duplex and separating the two strands in an active process ; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=93.56 E-value=0.16 Score=29.46 Aligned_cols=66 Identities=24% Similarity=0.386 Sum_probs=43.3
Q ss_pred ECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCCCCE-----EEE-CCCCCEEEEEECCCCHHHHHHH
Q ss_conf 5165444414678850563057203681110032676316885689846-----864-6898438999343898899999
Q gi|254780606|r 571 TQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDM-----LYM-SGGGRIQRVHGPLVSDIEIEKV 644 (744)
Q Consensus 571 tQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~gd~-----l~~-~~~~~~~r~~~~~~~~~~~~~~ 644 (744)
--.|.-+|| .+-+|. +.-+| || .-|..|.-+--+ ||. .+.|+.+||=.|==++.|-|+|
T Consensus 264 ~DfP~LKvI--KLEQNY----------RS~~R-IL--kaAN~LI~NNpH~F~K~LfS~l~~Ge~~kVi~~~NE~hEAEri 328 (677)
T TIGR01074 264 EDFPQLKVI--KLEQNY----------RSTSR-IL--KAANILIANNPHVFEKKLFSELGEGEKIKVIECRNEEHEAERI 328 (677)
T ss_pred HCCCCCEEE--EECCCC----------CCHHH-HH--HHHHHHHHCCCCCCCCCHHHHHCCCCEEEEEECCCCHHHHHHH
T ss_conf 158644165--000066----------66466-99--9976776227420000000100169817888517863168999
Q ss_pred HHHHHHC
Q ss_conf 9999840
Q gi|254780606|r 645 VQHLKKQ 651 (744)
Q Consensus 645 ~~~~~~~ 651 (744)
|.-|-++
T Consensus 329 ~~ei~~~ 335 (677)
T TIGR01074 329 AGEIIAH 335 (677)
T ss_pred HHHHHHH
T ss_conf 9999999
No 308
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.55 E-value=0.25 Score=28.15 Aligned_cols=127 Identities=20% Similarity=0.314 Sum_probs=63.0
Q ss_pred ECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC---------------CCEECCCCCCCCEEEEE
Q ss_conf 112011484699707875344799999999998568011079997234---------------21000125775200004
Q gi|254780606|r 406 IADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK---------------MLELSVYDGIPHLLTPV 470 (744)
Q Consensus 406 ~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k---------------~~~~~~~~~~ph~~~~v 470 (744)
-+++.+.--+-|-|..|+|||++|+. |.+|. .|+.=++++-+-. +.-|-.|.-+||+- |
T Consensus 20 s~~i~~Ge~~~ivGpSG~GKSTllr~-i~Gl~---~p~~G~I~~~g~~i~~~~~~~~~~rr~ig~vFQ~~~L~p~~t--v 93 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRC-IAGLE---EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLT--V 93 (178)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCEEEEECCEECCCCCCHHHHHCCCEEEEECCCCCCCCCC--H
T ss_conf 76988998999999999839999999-98599---999639999999998886102454177599926998899892--8
Q ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHH-HHHHHHHCCHHH
Q ss_conf 4441787689999998667699999980778679999988642026776665432338679998445-687675310358
Q gi|254780606|r 471 VTNPKKAVMALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDE-MADLMMVAGKEI 549 (744)
Q Consensus 471 ~~~~~~~~~~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE-~a~l~~~~~~~~ 549 (744)
..+. ..- +..-|..|-.+- +.-. .-|.|+ +.|| ++.|-.....++
T Consensus 94 ~eNv---~~~---LSGGq~QRvaIA------------------RAL~---------~~P~il-l~DEPts~LD~~~~~~i 139 (178)
T cd03229 94 LENI---ALG---LSGGQQQRVALA------------------RALA---------MDPDVL-LLDEPTSALDPITRREV 139 (178)
T ss_pred HHHH---CEE---CCCHHHHHHHHH------------------HHHH---------CCCCEE-EEECCCCCCCHHHHHHH
T ss_conf 9960---081---772688999999------------------9985---------299999-97089764799999999
Q ss_pred HHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 99999999964201358999851654
Q gi|254780606|r 550 EGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 550 e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
.+. |-..-+..|+-.|+.|-..+
T Consensus 140 ~~~---l~~l~~~~~~t~i~vTHd~~ 162 (178)
T cd03229 140 RAL---LKSLQAQLGITVVLVTHDLD 162 (178)
T ss_pred HHH---HHHHHHHHCCEEEEECCCHH
T ss_conf 999---99999964999999989999
No 309
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=93.53 E-value=0.27 Score=27.91 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=22.9
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHH
Q ss_conf 2112011484699707875344799999
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTM 432 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~ 432 (744)
|-+++.+.=-+-|.|.+|||||++++.|
T Consensus 34 Vsl~i~~GE~lgiVGeSGsGKSTL~~~l 61 (327)
T PRK11308 34 VSFNLERGKTLAVVGESGCGKSTLARLL 61 (327)
T ss_pred EEEEECCCCEEEEECCCCHHHHHHHHHH
T ss_conf 0679889999999999831999999999
No 310
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=93.52 E-value=0.59 Score=25.57 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=12.6
Q ss_pred CHHHCCCEEEEECCCCCHHHHHHH
Q ss_conf 201148469970787534479999
Q gi|254780606|r 408 DLANMPHILVAGTTGSGKSVAINT 431 (744)
Q Consensus 408 dl~~~PH~lvaG~TgsGKS~~l~~ 431 (744)
++.+.=-+-|.|..|||||++++.
T Consensus 284 ~v~~GEi~gi~G~nGsGKsTLl~~ 307 (513)
T PRK13549 284 SLRRGEILGIAGLVGAGRTELVQC 307 (513)
T ss_pred EECCCCEEEEECCCCCCHHHHHHH
T ss_conf 886884899747988658999999
No 311
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.50 E-value=0.19 Score=28.91 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=25.2
Q ss_pred EEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 3211201148469970787534479999999999
Q gi|254780606|r 404 SVIADLANMPHILVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 404 ~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
-+-+++.+.--+.|.|..|||||++++. |++|+
T Consensus 18 ~vsl~i~~Gei~~iiG~nGaGKSTLl~~-i~Gl~ 50 (205)
T cd03226 18 DLSLDLYAGEIIALTGKNGAGKTTLAKI-LAGLI 50 (205)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHH-HHCCC
T ss_conf 0378886998999988999989999999-95685
No 312
>PRK03918 chromosome segregation protein; Provisional
Probab=93.49 E-value=0.068 Score=32.00 Aligned_cols=21 Identities=38% Similarity=0.776 Sum_probs=10.9
Q ss_pred EEEECCCCCHHHHHHHHHHHH
Q ss_conf 997078753447999999999
Q gi|254780606|r 416 LVAGTTGSGKSVAINTMIMSL 436 (744)
Q Consensus 416 lvaG~TgsGKS~~l~~~i~sl 436 (744)
+|.|.||||||..+-+|..+|
T Consensus 27 ~I~G~nGsGKStIlDAI~~aL 47 (882)
T PRK03918 27 LIIGQNGSGKSSLLDAILVGL 47 (882)
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 988999998899999999998
No 313
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=93.48 E-value=0.48 Score=26.18 Aligned_cols=26 Identities=27% Similarity=0.566 Sum_probs=14.8
Q ss_pred HCCCE-EEEECCCCCHHHHHHHHHHHH
Q ss_conf 14846-997078753447999999999
Q gi|254780606|r 411 NMPHI-LVAGTTGSGKSVAINTMIMSL 436 (744)
Q Consensus 411 ~~PH~-lvaG~TgsGKS~~l~~~i~sl 436 (744)
+.||. |-.|.-|.||+.+-+.+..+|
T Consensus 35 ri~HAyLF~GP~GtGKts~ArifAkaL 61 (557)
T PRK07270 35 KISHAYLFSGPRGTGKTSAAKIFAKAM 61 (557)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 954044210899868999999999995
No 314
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.45 E-value=0.069 Score=31.94 Aligned_cols=43 Identities=28% Similarity=0.407 Sum_probs=28.5
Q ss_pred ECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 112011484699707875344799999999998568011079997234
Q gi|254780606|r 406 IADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK 453 (744)
Q Consensus 406 ~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k 453 (744)
-+++.+.--+.+.|..|||||++++. |++|+ .|+.=++. +|-|
T Consensus 21 sl~i~~Gei~~liGpNGaGKSTLlk~-l~Gl~---~p~~G~I~-~~G~ 63 (271)
T PRK13638 21 NLDFSLSPVTGLVGANGCGKSTLFMN-LSGLL---RPQKGAVL-WQGK 63 (271)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHH-HHCCC---CCCCEEEE-ECCE
T ss_conf 87983897999999999809999999-96688---88860799-9999
No 315
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.42 E-value=0.44 Score=26.42 Aligned_cols=164 Identities=23% Similarity=0.330 Sum_probs=76.6
Q ss_pred EEEEEEECCCCCEEECCHHH--CCC--EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCC-----
Q ss_conf 68984205788732112011--484--699707875344799999999998568011079997234210001257-----
Q gi|254780606|r 392 LALCLGKTISGESVIADLAN--MPH--ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDG----- 462 (744)
Q Consensus 392 l~~~~g~~~~g~~~~~dl~~--~PH--~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~----- 462 (744)
+.++.+ -++.+++.|+.- .|- +.|-|..|||||++++ ++++| |.-.-..+++--+|-+..+...++.
T Consensus 477 vsf~y~--~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~K-LL~gl-y~p~~G~I~~dg~dl~~i~~~~lR~~ig~V 552 (709)
T COG2274 477 VSFRYG--PDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLK-LLLGL-YKPQQGRILLDGVDLNDIDLASLRRQVGYV 552 (709)
T ss_pred EEEEEC--CCCCCHHHCEEEEECCCCEEEEECCCCCCHHHHHH-HHHCC-CCCCCCEEEECCEEHHHCCHHHHHHHEEEE
T ss_conf 899817--99844121502776799889998799998899999-98367-888885599998727866999998654687
Q ss_pred --CCCEEEE-----------EEECHHHHHHHHH-----HHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHCCCCCCCCC
Q ss_conf --7520000-----------4444178768999-----999866769999998077867-99999886420267766654
Q gi|254780606|r 463 --IPHLLTP-----------VVTNPKKAVMALK-----WAVREMEERYRKMSHLSVRNI-KSYNERISTMYGEKPQGCGD 523 (744)
Q Consensus 463 --~ph~~~~-----------v~~~~~~~~~~l~-----~~~~em~~r~~~~~~~~~~~i-~~~n~~~~~~~~~~~~~~~~ 523 (744)
-++++.. .++ .++...+++ +.+..|-.-|...-..+..|+ .+=.+|+.-.+.-.
T Consensus 553 ~Q~~~Lf~gSI~eNi~l~~p~~~-~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl------ 625 (709)
T COG2274 553 LQDPFLFSGSIRENIALGNPEAT-DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALL------ 625 (709)
T ss_pred CCCCHHHCCCHHHHHHCCCCCCC-HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC------
T ss_conf 46653204739879746899999-79999999983768999836054562320489888888999999999854------
Q ss_pred CCCCCCEEEEEHHHHHHHHHHCCHHHHHHH-HHHHHHHHCCEEEEEEEECCCC
Q ss_conf 323386799984456876753103589999-9999964201358999851654
Q gi|254780606|r 524 DMRPMPYIVIIVDEMADLMMVAGKEIEGAI-QRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 524 ~~~~~p~ivvviDE~a~l~~~~~~~~e~~~-~~la~~~ra~GihlilatQrp~ 575 (744)
.-|.| ++.||---- -..+-|..| ..|.+.. .|.-+|+.|-|++
T Consensus 626 ---~~P~I-LlLDEaTSa---LD~~sE~~I~~~L~~~~--~~~T~I~IaHRl~ 669 (709)
T COG2274 626 ---SKPKI-LLLDEATSA---LDPETEAIILQNLLQIL--QGRTVIIIAHRLS 669 (709)
T ss_pred ---CCCCE-EEEECCCCC---CCHHHHHHHHHHHHHHH--CCCEEEEEECCCH
T ss_conf ---69998-997074223---69867999999999984--5886999976616
No 316
>KOG0345 consensus
Probab=93.38 E-value=0.62 Score=25.41 Aligned_cols=214 Identities=19% Similarity=0.318 Sum_probs=93.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHC----CHHHEEEEEECCCC-CEE-------CCCCCCCCEEEEEEECHHHHHHHH
Q ss_conf 469970787534479999999999856----80110799972342-100-------012577520000444417876899
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRL----RPDECRMIMVDPKM-LEL-------SVYDGIPHLLTPVVTNPKKAVMAL 481 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~----~p~~~~~~liD~k~-~~~-------~~~~~~ph~~~~v~~~~~~~~~~l 481 (744)
.+.|--.||||||-.--.=++.++++. +|-++.-++|-|-+ ... .+...++|+.+..+.--.
T Consensus 45 DVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~------ 118 (567)
T KOG0345 45 DVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGR------ 118 (567)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCC------
T ss_conf 56898567887106689999999986115789651247996571999999999999999850365459997686------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHH-HCCHHHHHHHHHHHHHH
Q ss_conf 99998667699999980778679999988642026776665432338679998445687675-31035899999999964
Q gi|254780606|r 482 KWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMM-VAGKEIEGAIQRLAQMA 560 (744)
Q Consensus 482 ~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~-~~~~~~e~~~~~la~~~ 560 (744)
..+.-+..|.+.+..-+.+--.|....-. .+...-+.+.| =++|+||---|.. ...+.+...|..|- +-
T Consensus 119 -----~v~~Di~~fkee~~nIlVgTPGRL~di~~--~~~~~l~~rsL--e~LVLDEADrLldmgFe~~~n~ILs~LP-KQ 188 (567)
T KOG0345 119 -----SVEEDIKTFKEEGPNILVGTPGRLLDILQ--REAEKLSFRSL--EILVLDEADRLLDMGFEASVNTILSFLP-KQ 188 (567)
T ss_pred -----CHHHHHHHHHHHCCCEEEECCHHHHHHHH--CHHHCCCCCCC--CEEEECCHHHHHCCCHHHHHHHHHHHCC-CC
T ss_conf -----47779999997099589947624999984--53000361331--1577514676744327999999998662-10
Q ss_pred HCCEEEEEEEECCCCCCCCHHHHHHCCC--CEEEEECCCH--HHCCHHCC---CCCHHHH-------CC----CCCEEEE
Q ss_conf 2013589998516544441467885056--3057203681--11003267---6316885-------68----9846864
Q gi|254780606|r 561 RAAGIHLIMATQRPSVDVITGTIKANFP--IRISFQVTSK--IDSRTILG---EHGAEQL-------LG----RGDMLYM 622 (744)
Q Consensus 561 ra~GihlilatQrp~~~vi~~~ik~n~~--~ri~~~v~~~--~dsr~il~---~~gae~l-------~g----~gd~l~~ 622 (744)
|-.| |--|||+=. +..++|+++- .||.-+..+. .-|+.-+- ..-.|++ .+ +. +.|.
T Consensus 189 RRTG--LFSATq~~~---v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~-iVFF 262 (567)
T KOG0345 189 RRTG--LFSATQTQE---VEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKC-IVFF 262 (567)
T ss_pred CCCC--CCEEHHHHH---HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHEEEEECHHHHHHHHHHHHHCCCCCCE-EEEE
T ss_conf 0024--430021466---889998535686365412344555842311125675778889999999962454627-9993
Q ss_pred ----------------CCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf ----------------689843899934389889999999998
Q gi|254780606|r 623 ----------------SGGGRIQRVHGPLVSDIEIEKVVQHLK 649 (744)
Q Consensus 623 ----------------~~~~~~~r~~~~~~~~~~~~~~~~~~~ 649 (744)
.+...+.-+||-..-..--..+-.|-+
T Consensus 263 ~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~ 305 (567)
T KOG0345 263 PTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRK 305 (567)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCHHCCHHHHHHHHHHHH
T ss_conf 4754099999888876078747986220123468899999871
No 317
>KOG0733 consensus
Probab=93.37 E-value=0.13 Score=30.01 Aligned_cols=88 Identities=24% Similarity=0.351 Sum_probs=52.9
Q ss_pred EEEEHHHHHHHH---HHCCHHHHHHH--------HHHHHHHH-CCEEEEEEEECCCCCCCCHHHHH--HCCCCEEEEECC
Q ss_conf 999844568767---53103589999--------99999642-01358999851654444146788--505630572036
Q gi|254780606|r 531 IVIIVDEMADLM---MVAGKEIEGAI--------QRLAQMAR-AAGIHLIMATQRPSVDVITGTIK--ANFPIRISFQVT 596 (744)
Q Consensus 531 ivvviDE~a~l~---~~~~~~~e~~~--------~~la~~~r-a~GihlilatQrp~~~vi~~~ik--~n~~~ri~~~v~ 596 (744)
-||+|||+-... ..+.+|+|.-| ..|...++ ..++-+|-||.||+ .|.+-+| .-|..-||+.|.
T Consensus 284 civFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD--slDpaLRRaGRFdrEI~l~vP 361 (802)
T KOG0733 284 CIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD--SLDPALRRAGRFDREICLGVP 361 (802)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCC--CCCHHHHCCCCCCCEEEECCC
T ss_conf 599851100136440457889999999999985100256666899769982478976--558777325655323530689
Q ss_pred CHHHCCHHCCCCCHHHHCCCCCEEE
Q ss_conf 8111003267631688568984686
Q gi|254780606|r 597 SKIDSRTILGEHGAEQLLGRGDMLY 621 (744)
Q Consensus 597 ~~~dsr~il~~~gae~l~g~gd~l~ 621 (744)
|...-.-||-. =+..|-=.||+=|
T Consensus 362 ~e~aR~~IL~~-~~~~lrl~g~~d~ 385 (802)
T KOG0733 362 SETAREEILRI-ICRGLRLSGDFDF 385 (802)
T ss_pred CHHHHHHHHHH-HHHHCCCCCCCCH
T ss_conf 66889999999-9862777877689
No 318
>PTZ00209 retrotransposon hot spot protein; Provisional
Probab=93.35 E-value=0.26 Score=27.97 Aligned_cols=54 Identities=17% Similarity=0.357 Sum_probs=38.4
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCC
Q ss_conf 1484699707875344799999999998568011079997234210001257752
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPH 465 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph 465 (744)
-.+|+|| ||.|=|||.-.-|.|+--|+++.-+.|.++.-=..+..|-+|+....
T Consensus 172 P~~~vLI-GTPGIGKSm~aGSyLLYqLLHyDae~L~vVay~~g~~aylf~~k~~~ 225 (693)
T PTZ00209 172 PPTHIVI-GISGIGKSCGVGSFLLHSLLHFHEGMLDVVVYFTDVKAYLIYNKKGN 225 (693)
T ss_pred CCCEEEE-CCCCCCCCCCCHHHHHHHHHHCCHHHCCEEEEEECCEEEEEEECCCC
T ss_conf 9852897-89975533342899999987135745858999966768999855898
No 319
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.32 E-value=0.079 Score=31.53 Aligned_cols=208 Identities=17% Similarity=0.191 Sum_probs=97.2
Q ss_pred EEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCC---CEE--------CCCCCCCCE-EEEEE
Q ss_conf 321120114846997078753447999999999985680110799972342---100--------012577520-00044
Q gi|254780606|r 404 SVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKM---LEL--------SVYDGIPHL-LTPVV 471 (744)
Q Consensus 404 ~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~---~~~--------~~~~~~ph~-~~~v~ 471 (744)
-+-+++.+.-.+.|.|..|||||++++. |.+|+ .|..=++ .+|-+. ..+ ..|++-.+. +...|
T Consensus 25 ~is~~i~~Ge~~aiiG~sGsGKSTL~~~-l~Gl~---~~~~G~I-~~~G~~i~~~~~~~~r~~ig~VfQ~p~~~l~~~tV 99 (277)
T PRK13642 25 GVSFSITKGEWVSIIGQNGSGKSTTARL-IDGLF---EEFEGIV-KIDGERLTAENVWNLRRKIGMVFQNPDNQFVGATV 99 (277)
T ss_pred CEEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCCEE-EECCEECCCCCHHHHHCCCEEEEECCCCCCCCCCH
T ss_conf 3079988998999999999689999999-96389---9888489-99999998578888851768999897632575508
Q ss_pred -ECHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCHHH---------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHH-
Q ss_conf -44178768999999866769999-99807786799---------9998864202677666543233867999844568-
Q gi|254780606|r 472 -TNPKKAVMALKWAVREMEERYRK-MSHLSVRNIKS---------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMA- 539 (744)
Q Consensus 472 -~~~~~~~~~l~~~~~em~~r~~~-~~~~~~~~i~~---------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a- 539 (744)
.+..........-.+++.+|... +...+..++.. =.+|+.-... +..-|- +++.||=.
T Consensus 100 ~e~i~~g~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~P~~LSGGqrQRvaIA~a---------La~~P~-ililDEPTs 169 (277)
T PRK13642 100 EDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGI---------IALRPE-IIILDESTS 169 (277)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHH---------HHCCCC-EEEEECCCC
T ss_conf 8889877766699999999999999987799656557912289999999999999---------966999-999958876
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCCCCE
Q ss_conf 76753103589999999996420135899985165444414678850563057203681110032676316885689846
Q gi|254780606|r 540 DLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDM 619 (744)
Q Consensus 540 ~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~gd~ 619 (744)
.|-.....++...|. ++.+..|+-+|+.|...+ .+ +. .-||.+-- +-+ |+-++-.+.++.+-+.
T Consensus 170 ~LD~~~~~~i~~ll~---~L~~~~~~Tii~iTHdl~------~~-~~-aDrv~vm~----~G~-Iv~~G~~~evf~~p~~ 233 (277)
T PRK13642 170 MLDPTGRSEIMRVIH---EIKDKYHLTVLSITHDLD------EA-AS-SDRILVMR----AGE-IIKEAAPSELFATSED 233 (277)
T ss_pred CCCHHHHHHHHHHHH---HHHHHCCCEEEEEEECHH------HH-HH-CCEEEEEE----CCE-EEEECCHHHHHCCHHH
T ss_conf 589899999999999---999816989999945889------99-71-99899998----999-9997689998769677
Q ss_pred EEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCC
Q ss_conf 8646898438999343898899999999984088
Q gi|254780606|r 620 LYMSGGGRIQRVHGPLVSDIEIEKVVQHLKKQGC 653 (744)
Q Consensus 620 l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 653 (744)
|... .+.-..+-++...++..|.
T Consensus 234 l~~~-----------~l~~P~~~~l~~~L~~~g~ 256 (277)
T PRK13642 234 MVEI-----------GLDVPFSSNLMKDLRTNGF 256 (277)
T ss_pred HHHC-----------CCCCCHHHHHHHHHHHCCC
T ss_conf 9877-----------9999879999999997599
No 320
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.32 E-value=0.48 Score=26.14 Aligned_cols=47 Identities=23% Similarity=0.369 Sum_probs=29.1
Q ss_pred CCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE
Q ss_conf 887321120----1148469970787534479999999999856801107999
Q gi|254780606|r 401 SGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM 449 (744)
Q Consensus 401 ~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l 449 (744)
.|..++-|+ .+.--+.+-|..|||||++++. |+++. .+.|+.=++++
T Consensus 11 g~~~vL~~vsl~v~~Gei~~iiGpnGaGKSTLl~~-i~G~~-~~~~~~G~I~~ 61 (200)
T cd03217 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKT-IMGHP-KYEVTEGEILF 61 (200)
T ss_pred CCEEEEECCEEEECCCCEEEEECCCCCCHHHHHHH-HCCCC-CCCCCCCEEEE
T ss_conf 99998855056887998999996899999999999-70777-77852007999
No 321
>PRK13768 GTPase; Provisional
Probab=93.31 E-value=0.47 Score=26.21 Aligned_cols=44 Identities=25% Similarity=0.403 Sum_probs=31.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCC
Q ss_conf 46997078753447999999999985680110799972342100012
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVY 460 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~ 460 (744)
-.+|.|.-|||||++.+.+-.-|-. .-..+.++=.||-. +...|
T Consensus 4 ~~~ViGpaGSGKsT~~~~l~~~l~~--~~r~~~vvNLDPA~-e~~pY 47 (253)
T PRK13768 4 IVFFLGTAGSGKTTLVGALSDWLEE--QGYDVAIVNLDPAV-EYLPY 47 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCCEEEEECCCCC-CCCCC
T ss_conf 8999899999889999999999997--69975999789866-58999
No 322
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=93.29 E-value=0.067 Score=32.02 Aligned_cols=197 Identities=23% Similarity=0.294 Sum_probs=93.4
Q ss_pred EEEEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC------CCCCEECC--------
Q ss_conf 9842057887321120114846997078753447999999999985680110799972------34210001--------
Q gi|254780606|r 394 LCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD------PKMLELSV-------- 459 (744)
Q Consensus 394 ~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD------~k~~~~~~-------- 459 (744)
+-+-.++.|+-| +-|+|..|||||.+|| +|.+|. .|+.=++.|=| -|++.|..
T Consensus 14 Ld~~~~~pg~Gv---------tAlFG~SGsGKTtli~-~iaGL~---rp~~G~i~l~G~~L~ds~k~i~Lp~ekRr~GYV 80 (361)
T TIGR02142 14 LDVDLTLPGQGV---------TALFGRSGSGKTTLIR-LIAGLT---RPDEGEIVLNGEVLFDSRKGIFLPPEKRRIGYV 80 (361)
T ss_pred EEEEEECCCCEE---------EEEECCCCCHHHHHHH-HHHHCC---CCCCCEEEECCEEEECCCCCCCCCCCCCEEEEE
T ss_conf 777653287406---------8712589970789999-987316---756687998874620567766787201135368
Q ss_pred CC---CCCCEEEEEEECHH----HHHHHH----HHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 25---77520000444417----876899----9999866769999998077867-999998864202677666543233
Q gi|254780606|r 460 YD---GIPHLLTPVVTNPK----KAVMAL----KWAVREMEERYRKMSHLSVRNI-KSYNERISTMYGEKPQGCGDDMRP 527 (744)
Q Consensus 460 ~~---~~ph~~~~v~~~~~----~~~~~l----~~~~~em~~r~~~~~~~~~~~i-~~~n~~~~~~~~~~~~~~~~~~~~ 527 (744)
|+ -+||+- |-.|.. ++.... ...+-+|-.---|+.+ ..+.+ .+=.+|++-.+.-- -
T Consensus 81 FQeA~LFPHl~--Vr~NL~YG~~~~~~~~r~i~~~~v~~lLgi~hLL~R-~p~~LSGGEkQRVAIGRALL---------s 148 (361)
T TIGR02142 81 FQEARLFPHLS--VRGNLRYGMKRARPKERRISFERVIELLGIEHLLER-LPGRLSGGEKQRVAIGRALL---------S 148 (361)
T ss_pred EECCEECCCHH--HHHHHHCCCCCCCHHHCCCCHHHHHHHHCCCCCCCC-CCCCCCCCCHHHHHHHHHHH---------C
T ss_conf 85355078523--345512572105741213788999987467511216-78875784047788998874---------1
Q ss_pred CCEEEEEHHH-HHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCC----------HHH-----------HHH
Q ss_conf 8679998445-687675310358999999999642013589998516544441----------467-----------885
Q gi|254780606|r 528 MPYIVIIVDE-MADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVI----------TGT-----------IKA 585 (744)
Q Consensus 528 ~p~ivvviDE-~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi----------~~~-----------ik~ 585 (744)
-|.+++ .|| +|-|=+.-++||-=++.|| .+..+|=+|+-+--++ .|. .|. =+.
T Consensus 149 ~P~LLL-MDEPLaaLD~~rk~EilPYLerL---~~e~~iP~lyVSHsl~-Ev~rLADrvvvl~~GrV~a~G~~~~v~~~~ 223 (361)
T TIGR02142 149 SPRLLL-MDEPLAALDEPRKKEILPYLERL---HAELKIPILYVSHSLD-EVARLADRVVVLEDGRVEAAGPLEEVWSSP 223 (361)
T ss_pred CCCHHH-CCCCHHHCCHHHHHHHCCHHHHH---HHHHCCCEEEEECCHH-HHHHHHCEEEEEECCEECCCCCHHHHHCCC
T ss_conf 874111-04662340644466416167678---9872798899904979-998760747874357010368679995365
Q ss_pred CCCCEEEEECCCHHHCCHHCCCCCHHHH----CC-CCCEE
Q ss_conf 0563057203681110032676316885----68-98468
Q gi|254780606|r 586 NFPIRISFQVTSKIDSRTILGEHGAEQL----LG-RGDML 620 (744)
Q Consensus 586 n~~~ri~~~v~~~~dsr~il~~~gae~l----~g-~gd~l 620 (744)
||+.=+.+.=.+.+-+-+|..-.-.+.| +| .|..+
T Consensus 224 ~l~p~~~~~~~g~~~~~~v~~~~~~ygL~~l~l~e~~~l~ 263 (361)
T TIGR02142 224 DLPPWLEREEAGSVLEGVVAEHDQHYGLTALRLGEDGHLW 263 (361)
T ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCCCEECCCCCCCEEE
T ss_conf 7772325786633656541103865320120158883899
No 323
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.29 E-value=0.64 Score=25.32 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=13.2
Q ss_pred HCCC-EEEEECCCCCHHHHHHHHHHHH
Q ss_conf 1484-6997078753447999999999
Q gi|254780606|r 411 NMPH-ILVAGTTGSGKSVAINTMIMSL 436 (744)
Q Consensus 411 ~~PH-~lvaG~TgsGKS~~l~~~i~sl 436 (744)
+.+| .|-.|.-|.|||.+-+-+..+|
T Consensus 41 ~~~~aylf~G~rG~GKTt~Ari~ak~l 67 (507)
T PRK06645 41 RLAGGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 966347745879978899999999996
No 324
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=93.28 E-value=0.063 Score=32.20 Aligned_cols=26 Identities=38% Similarity=0.704 Sum_probs=20.3
Q ss_pred CHHHCC-CEEEEECCCCCHHHHHHHHH
Q ss_conf 201148-46997078753447999999
Q gi|254780606|r 408 DLANMP-HILVAGTTGSGKSVAINTMI 433 (744)
Q Consensus 408 dl~~~P-H~lvaG~TgsGKS~~l~~~i 433 (744)
++.+.| ++-|.|.+|+|||.|||++-
T Consensus 30 ~~~~~~lnIavtGesG~GkSsfINalR 56 (375)
T pfam05049 30 EISSAPLKIAVTGDSGNGKSSFINALR 56 (375)
T ss_pred HHHCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 544382479985489986789999874
No 325
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=93.26 E-value=0.64 Score=25.30 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=23.8
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 14846997078753447999999999985
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYR 439 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~ 439 (744)
+.-.+++.|.+|.|||-+..++...++.+
T Consensus 46 ~~~Nlll~G~~GtGKThLA~Ai~~~~~~~ 74 (178)
T pfam01695 46 QAENLLLLGPPGVGKTHLACALGHQACRA 74 (178)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 58768998999987899999999999986
No 326
>pfam05673 DUF815 Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.
Probab=93.24 E-value=0.12 Score=30.23 Aligned_cols=68 Identities=19% Similarity=0.349 Sum_probs=39.6
Q ss_pred CCCEEEHHHHHCCHHHCCC--CCCEEEEEEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEE
Q ss_conf 8870765875128121146--78368984205788732112011484699707875344799999999998568011079
Q gi|254780606|r 370 TRETVYLRQIIESRSFSHS--KANLALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRM 447 (744)
Q Consensus 370 ~~~~v~~~~~~~~~~~~~~--~~~l~~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~ 447 (744)
....|.|.+|+.-+.-+.. .....+ +.|. ..-|+|+-|+-|.|||.++++++ ..+.++.|+|
T Consensus 21 ~~d~v~l~~L~Gie~Qk~~l~~NT~~F-----~~G~-------pAnnvLLwG~RGtGKSSlVKall----~~~~~~gLrl 84 (248)
T pfam05673 21 HPDPVDLDDLVGIDRQKEALLRNTEQF-----LAGL-------PANNVLLWGARGTGKSSLVKALL----NEYADQGLRL 84 (248)
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHH-----HCCC-------CCCCEEEECCCCCCHHHHHHHHH----HHHHHCCCEE
T ss_conf 889899889349399999999999999-----8089-------86136767689898889999999----9863149569
Q ss_pred EEECCC
Q ss_conf 997234
Q gi|254780606|r 448 IMVDPK 453 (744)
Q Consensus 448 ~liD~k 453 (744)
|=|+-.
T Consensus 85 IEv~k~ 90 (248)
T pfam05673 85 IEVDKD 90 (248)
T ss_pred EEECHH
T ss_conf 998788
No 327
>PRK02362 ski2-like helicase; Provisional
Probab=93.23 E-value=0.6 Score=25.47 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=25.2
Q ss_pred CCEEEEEHHHHHHHHHHCC---HHHHHHHHHHHHHHH----CCEEEEEEEECCCC
Q ss_conf 8679998445687675310---358999999999642----01358999851654
Q gi|254780606|r 528 MPYIVIIVDEMADLMMVAG---KEIEGAIQRLAQMAR----AAGIHLIMATQRPS 575 (744)
Q Consensus 528 ~p~ivvviDE~a~l~~~~~---~~~e~~~~~la~~~r----a~GihlilatQrp~ 575 (744)
||---|||..+...-...+ -.+-++.+-++|-|| ..|.-+|+|.++..
T Consensus 345 LPAr~VIi~~~~~~~~~~g~~~l~~~e~~QM~GRAGRpg~D~~G~aili~~~~~~ 399 (736)
T PRK02362 345 LPARRVIIRDYRRYDSGAGMQPIPVLEYHQMAGRAGRPRLDPYGEAVLLAKSYDE 399 (736)
T ss_pred CCEEEEEEECCEEECCCCCCEECCHHHHHHHHHHCCCCCCCCCCEEEEEECCHHH
T ss_conf 8526999804367369888336889999999852489988988629999678278
No 328
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.22 E-value=0.57 Score=25.63 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=22.6
Q ss_pred ECCHHHCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 112011484699707875344799999999
Q gi|254780606|r 406 IADLANMPHILVAGTTGSGKSVAINTMIMS 435 (744)
Q Consensus 406 ~~dl~~~PH~lvaG~TgsGKS~~l~~~i~s 435 (744)
-+++.+.=.+.|.|..|||||++++.| ++
T Consensus 26 sl~i~~Gei~aiiG~nGsGKSTL~~~i-~G 54 (252)
T CHL00131 26 NLSINAGEIHAIMGPNGSGKSTLSKVI-AG 54 (252)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHH-CC
T ss_conf 778879989999999999999999997-27
No 329
>PRK09183 transposase/IS protein; Provisional
Probab=93.20 E-value=0.66 Score=25.23 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=20.9
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 1484699707875344799999999998
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLY 438 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~ 438 (744)
+.=++++.|.||.|||-+-.++-...+.
T Consensus 100 ~~~Nvil~G~~GtGKThLA~Alg~~A~~ 127 (258)
T PRK09183 100 RNENIVLLGPSGVGKTHLAIALGYEAVR 127 (258)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 5886799899998689999999999998
No 330
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.19 E-value=0.11 Score=30.61 Aligned_cols=34 Identities=32% Similarity=0.358 Sum_probs=25.4
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 2112011484699707875344799999999998
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLY 438 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~ 438 (744)
+-+++.+.=.+.|.|..|||||++|+.++...+.
T Consensus 14 vsl~i~~G~~~aIiG~sGsGKSTLl~~~L~~~~~ 47 (261)
T cd03271 14 IDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALA 47 (261)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 5889889999999879998699999999888541
No 331
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.18 E-value=0.66 Score=25.21 Aligned_cols=127 Identities=19% Similarity=0.274 Sum_probs=67.2
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC-----------CCEECCCCCCCCEEEEEEECHHHH
Q ss_conf 011484699707875344799999999998568011079997234-----------210001257752000044441787
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK-----------MLELSVYDGIPHLLTPVVTNPKKA 477 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k-----------~~~~~~~~~~ph~~~~v~~~~~~~ 477 (744)
|.+.--.||.|.+|+|||+|--..+..-+.+ -+.+-++.++-. +.+|..|..--.+.. +..++.+.
T Consensus 263 l~~GsstLi~Gp~GtGKTtla~qFl~~~a~~--GE~~l~~~FeE~~~~l~~~a~~~G~dl~~~~~~G~l~i-~~~~p~~~ 339 (501)
T PRK09302 263 FFRGSIILVSGATGTGKTLLVSKFAEAACRR--GERCLLFAFEESRAQLVRNATSWGIDLEEMERKGLLKI-ICARPEST 339 (501)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEEEECCHHHHHHHHHHCCCCHHHHHHCCCEEE-EEECCCCC
T ss_conf 7589469998899988899999999999865--99089999967999999999973998488874894799-98370005
Q ss_pred H-HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHC-CHHHHHHHHH
Q ss_conf 6-8999999866769999998077867999998864202677666543233867999844568767531-0358999999
Q gi|254780606|r 478 V-MALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVA-GKEIEGAIQR 555 (744)
Q Consensus 478 ~-~~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~-~~~~e~~~~~ 555 (744)
. ..+-+.+.+. + ++. -+ -.||||=+..+.... ..++...+.+
T Consensus 340 ~~~e~~~~i~~~--------------v---~~~------------------~~-~rVvIDsls~~~~~~~~~~~r~~l~~ 383 (501)
T PRK09302 340 GLEDHLQIIKRE--------------I---EEF------------------KP-SRVAVDPLSALARGGSLNEFRQFVIR 383 (501)
T ss_pred CHHHHHHHHHHH--------------H---HHC------------------CC-CEEEECCHHHHHHHCCHHHHHHHHHH
T ss_conf 989999999999--------------9---972------------------99-89999580687652685999999999
Q ss_pred HHHHHHCCEEEEEEEECCC
Q ss_conf 9996420135899985165
Q gi|254780606|r 556 LAQMARAAGIHLIMATQRP 574 (744)
Q Consensus 556 la~~~ra~GihlilatQrp 574 (744)
|...=+..||-.|+.....
T Consensus 384 L~~~Lk~~gvT~l~t~~~~ 402 (501)
T PRK09302 384 LTDYLKQEEITGLFTNLTP 402 (501)
T ss_pred HHHHHHHCCCEEEEEEECC
T ss_conf 9999976897899976123
No 332
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.17 E-value=0.66 Score=25.20 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=30.4
Q ss_pred CEEEEEHHHHHHHHHHC----CH------HHHHHHHHHHHHHHCCEEEEEEEECCC
Q ss_conf 67999844568767531----03------589999999996420135899985165
Q gi|254780606|r 529 PYIVIIVDEMADLMMVA----GK------EIEGAIQRLAQMARAAGIHLIMATQRP 574 (744)
Q Consensus 529 p~ivvviDE~a~l~~~~----~~------~~e~~~~~la~~~ra~GihlilatQrp 574 (744)
++-+||||-++.++... ++ ..-..+..|.++|+..+|-+++..|--
T Consensus 199 ~v~LvVvDSi~alfR~e~~grg~l~~Rq~~L~~~l~~L~~lA~~~niaVvvTNQV~ 254 (318)
T PRK04301 199 NIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQVM 254 (318)
T ss_pred CCEEEEEECCHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 80499994342321210468530999999999999999999998595799961367
No 333
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=93.09 E-value=0.055 Score=32.62 Aligned_cols=42 Identities=19% Similarity=0.407 Sum_probs=27.3
Q ss_pred EEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE
Q ss_conf 3211201148469970787534479999999999856801107999
Q gi|254780606|r 404 SVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM 449 (744)
Q Consensus 404 ~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l 449 (744)
||-..+.+.--+.+.|.-|||||+|+. ++++| +.|+.=++++
T Consensus 341 PiNl~ikrGelvFliG~NGsGKST~~~-LLtGL---~~PqsG~I~l 382 (546)
T COG4615 341 PINLTIKRGELVFLIGGNGSGKSTLAM-LLTGL---YQPQSGEILL 382 (546)
T ss_pred CEEEEEECCCEEEEECCCCCCHHHHHH-HHHHC---CCCCCCCEEE
T ss_conf 613687337389998889963889999-99706---6888882667
No 334
>pfam01637 Arch_ATPase Archaeal ATPase. This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family.
Probab=93.08 E-value=0.68 Score=25.12 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=24.0
Q ss_pred EEEEEHHHHHHHHHHC-CHHHHHHHHHHHHH-HHCCEEEEEEEE
Q ss_conf 7999844568767531-03589999999996-420135899985
Q gi|254780606|r 530 YIVIIVDEMADLMMVA-GKEIEGAIQRLAQM-ARAAGIHLIMAT 571 (744)
Q Consensus 530 ~ivvviDE~a~l~~~~-~~~~e~~~~~la~~-~ra~Gihlilat 571 (744)
.++||||||..+.... .+.+...++++-.. -...-+.+|+|.
T Consensus 110 ~~iiviDEfq~l~~~~~~~~~~~~l~~~~d~~~~~~~~~~I~~G 153 (223)
T pfam01637 110 KIAIIIDEVQYAIGLNGAESYVKLLLNLIDYPPKEYHLIVVLCG 153 (223)
T ss_pred CEEEEEECHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 65999701677640244305999999999975245775899972
No 335
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.08 E-value=0.37 Score=26.93 Aligned_cols=70 Identities=17% Similarity=0.321 Sum_probs=38.8
Q ss_pred CEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCC
Q ss_conf 679998445687675310358999999999642013589998516544441467885056305720368111003267
Q gi|254780606|r 529 PYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILG 606 (744)
Q Consensus 529 p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~ 606 (744)
.|-|+|||+.-+|.. +....+-.+---= .....+||.|-.|+ .+++ .|++-. -++.|+--+..+-...|-
T Consensus 139 ~~kV~IId~ad~mn~----~aaNALLK~LEEP-P~~t~fiLit~~~~-~llp-TI~SRC-q~~~~~~l~~~~~~~~L~ 208 (363)
T PRK07471 139 GWRVVIVDTADEMNA----NAANALLKVLEEP-PARSLLLLVSHAPA-RLLP-TIRSRC-RKLRLRPLAPEDVIAALA 208 (363)
T ss_pred CCEEEEEECHHHHCH----HHHHHHHHHHCCC-CCCEEEEEEECCHH-HCHH-HHHHHC-CCCCCCCCCHHHHHHHHH
T ss_conf 966999868787388----9999999972158-98838998639977-7779-999735-242589959999999999
No 336
>PTZ00243 ABC transporter; Provisional
Probab=93.03 E-value=0.088 Score=31.21 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=18.1
Q ss_pred HHCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 114846997078753447999999999
Q gi|254780606|r 410 ANMPHILVAGTTGSGKSVAINTMIMSL 436 (744)
Q Consensus 410 ~~~PH~lvaG~TgsGKS~~l~~~i~sl 436 (744)
.+.=...|.|.+|||||.+|++|+--|
T Consensus 684 ~~G~L~~IvG~vGSGKSSLL~aiLGE~ 710 (1560)
T PTZ00243 684 PRGKLTVVLGATGSGKSTLLQSLLSQF 710 (1560)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 599789998999987999999996888
No 337
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.01 E-value=0.37 Score=26.91 Aligned_cols=155 Identities=21% Similarity=0.390 Sum_probs=77.2
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCC------CEEC---CC-----CCCCCEEEEEEECH
Q ss_conf 0114846997078753447999999999985680110799972342------1000---12-----57752000044441
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKM------LELS---VY-----DGIPHLLTPVVTNP 474 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~------~~~~---~~-----~~~ph~~~~v~~~~ 474 (744)
+.+.--+.+-|..|||||+.|+ ||-.|+ .|+.=+ ++||-+. ++|- .| --.||+- |..|.
T Consensus 24 I~~gef~vliGpSGsGKTTtLk-MINrLi---ept~G~-I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~T--v~eNI 96 (309)
T COG1125 24 IEEGEFLVLIGPSGSGKTTTLK-MINRLI---EPTSGE-ILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLT--VAENI 96 (309)
T ss_pred ECCCEEEEEECCCCCCHHHHHH-HHHCCC---CCCCCE-EEECCEECCCCCHHHHHHHHHHHHHHCCCCCCCC--HHHHH
T ss_conf 6597289998789975787999-996055---888853-8989904465888999875335422215677635--98778
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHCCCCCHHHHHHHHHHHHCCCCCCCC---CCCCCCCEEEEEHHH-HHHHHHHCCHHH
Q ss_conf 787689999998667699-999980778679999988642026776665---432338679998445-687675310358
Q gi|254780606|r 475 KKAVMALKWAVREMEERY-RKMSHLSVRNIKSYNERISTMYGEKPQGCG---DDMRPMPYIVIIVDE-MADLMMVAGKEI 549 (744)
Q Consensus 475 ~~~~~~l~~~~~em~~r~-~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~---~~~~~~p~ivvviDE-~a~l~~~~~~~~ 549 (744)
.-....++|-.++.+.|. ++|...|.. -..|-.|....-+....... .-+..-|-|+ ..|| |..|--..-+..
T Consensus 97 a~VP~L~~w~k~~i~~r~~ELl~lvgL~-p~~~~~RyP~eLSGGQQQRVGv~RALAadP~il-LMDEPFgALDpI~R~~l 174 (309)
T COG1125 97 ATVPKLLGWDKERIKKRADELLDLVGLD-PSEYADRYPHELSGGQQQRVGVARALAADPPIL-LMDEPFGALDPITRKQL 174 (309)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCC-HHHHHHCCCHHCCCCHHHHHHHHHHHHCCCCEE-EECCCCCCCCHHHHHHH
T ss_conf 7615541779899999999999984989-789732092221862135888999974198868-63488554476549999
Q ss_pred HHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 99999999964201358999851654
Q gi|254780606|r 550 EGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 550 e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
... +..+-|-.|--.|+-|---+
T Consensus 175 Q~e---~~~lq~~l~kTivfVTHDid 197 (309)
T COG1125 175 QEE---IKELQKELGKTIVFVTHDID 197 (309)
T ss_pred HHH---HHHHHHHHCCEEEEEECCHH
T ss_conf 999---99999985987999935788
No 338
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.00 E-value=0.41 Score=26.66 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=18.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 484699707875344799999999
Q gi|254780606|r 412 MPHILVAGTTGSGKSVAINTMIMS 435 (744)
Q Consensus 412 ~PH~lvaG~TgsGKS~~l~~~i~s 435 (744)
..=..+-|..|||||++|++|...
T Consensus 22 ~~itaivG~NGaGKSTLl~~i~~~ 45 (204)
T cd03240 22 SPLTLIVGQNGAGKTTIIEALKYA 45 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 888999989999999999998630
No 339
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I; InterPro: IPR011913 RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (IPR011914 from INTERPRO) adds ADP to yield ADP-D-glycero-D-manno-heptose .; GO: 0016773 phosphotransferase activity alcohol group as acceptor, 0016779 nucleotidyltransferase activity, 0005975 carbohydrate metabolic process.
Probab=92.95 E-value=0.059 Score=32.41 Aligned_cols=147 Identities=25% Similarity=0.365 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHCCCC--EEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCC
Q ss_conf 899999987403551--389867648925899975488863999985999999871477632775189834544268888
Q gi|254780606|r 293 NAGSLETILEEFGIK--GEIINVNPGPVVTLYEFEPAPGIKSSRVIGLADDIARSMSSLSARVAVIPKRNAIGIELPNET 370 (744)
Q Consensus 293 ~~~~l~~~l~~~~~~--~~~~~~~~gp~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~pg~~~~~~~~p~~~ 370 (744)
.+..|+..|+..||+ ..++...-=||++.-++ |+++ .-.=+|| -...
T Consensus 75 ~g~~L~~ll~~~g~~~~~~l~~d~~rpT~~K~Rv-----------------~a~~-~QQllR~-------------D~E~ 123 (321)
T TIGR02198 75 AGKALEALLKEEGIDDTSGLIRDKSRPTTTKTRV-----------------LARA-NQQLLRV-------------DFEE 123 (321)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEE-----------------EECC-CEEEEEE-------------EEEC
T ss_conf 8999999997458643300277689894488888-----------------6046-5058997-------------4102
Q ss_pred CCEEE---HHHHHCCHHHCCCCCCEEEEEEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEE
Q ss_conf 87076---587512812114678368984205788732112011484699707875344799999999998568011079
Q gi|254780606|r 371 RETVY---LRQIIESRSFSHSKANLALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRM 447 (744)
Q Consensus 371 ~~~v~---~~~~~~~~~~~~~~~~l~~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~ 447 (744)
+.... ...|++ .|...-...-+ .|+-| .||-++-++++..++-.+.-.. +.
T Consensus 124 ~~~~~~~~~~~L~~--~~~~~l~~~d~---------VvLSD--------------YaKGvLt~~v~~~~I~~Ar~~~-~p 177 (321)
T TIGR02198 124 RKPINAEEEARLLA--AIKEQLASADA---------VVLSD--------------YAKGVLTPSVVQEVIAAAREAG-KP 177 (321)
T ss_pred CCCCCHHHHHHHHH--HHHHHHCCCCE---------EEEEE--------------CCCCCCCHHHHHHHHHHHHHCC-CC
T ss_conf 77689778999999--99997232878---------99986--------------6876358578999999999668-91
Q ss_pred EEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHH----HHH--HHHHHH-HHHHHHCCC
Q ss_conf 99723421000125775200004444178768999----999--866769-999998077
Q gi|254780606|r 448 IMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALK----WAV--REMEER-YRKMSHLSV 500 (744)
Q Consensus 448 ~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~----~~~--~em~~r-~~~~~~~~~ 500 (744)
+|||||+.+|+.|.|-= |++| |.+++..++. .+. .|...+ .+|+.++..
T Consensus 178 VlVDPKg~df~~Y~GAt-l~TP---N~~E~~~avG~~~~~~~~~~~~~~aa~~L~~~~~l 233 (321)
T TIGR02198 178 VLVDPKGKDFSRYRGAT-LITP---NRKEAEAAVGIKFIACENEAELVKAAEKLLEELDL 233 (321)
T ss_pred EEEECCCCCHHHHCCCC-CCCC---CHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 99807876234514664-2366---87999998588701105817899999999997099
No 340
>KOG0991 consensus
Probab=92.94 E-value=0.076 Score=31.66 Aligned_cols=41 Identities=29% Similarity=0.560 Sum_probs=31.3
Q ss_pred ECCCCCEEECCH-------HHCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 057887321120-------11484699707875344799999999998
Q gi|254780606|r 398 KTISGESVIADL-------ANMPHILVAGTTGSGKSVAINTMIMSLLY 438 (744)
Q Consensus 398 ~~~~g~~~~~dl-------~~~PH~lvaG~TgsGKS~~l~~~i~sl~~ 438 (744)
.||-|+--..+. .+|||++++|..|.||+.++.++..-||-
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred HHHHCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 882177989999999997289986675279998616489999999838
No 341
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=92.94 E-value=0.17 Score=29.23 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=27.0
Q ss_pred EECCCCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 2057887321120----1148469970787534479999999999
Q gi|254780606|r 397 GKTISGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 397 g~~~~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
-.+-..++++-|+ .+.=.+.|.|.+|||||++++.|+ +|+
T Consensus 28 ~Y~~~~~~vL~~inl~I~~Ge~vaIvG~sGsGKSTL~~ll~-gl~ 71 (257)
T cd03288 28 RYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFF-RMV 71 (257)
T ss_pred EECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHH-HCC
T ss_conf 93989957310538998799999999999981999999996-056
No 342
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=92.92 E-value=0.69 Score=25.07 Aligned_cols=138 Identities=17% Similarity=0.274 Sum_probs=67.9
Q ss_pred HHCCC-EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHH
Q ss_conf 11484-69970787534479999999999856801107999723421000125775200004444178768999999866
Q gi|254780606|r 410 ANMPH-ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREM 488 (744)
Q Consensus 410 ~~~PH-~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em 488 (744)
.+.|| .|..|.-|.||+.+-+.+..+|+-. ..+. + -|.++. -++....
T Consensus 23 ~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~-~~~~-----------~------~~D~~~---~~~~~~~---------- 71 (313)
T PRK05564 23 GKFSHASLIVGEDGIGKSILAKEIANKILGK-SEQR-----------E------YVDIIE---YKPINKK---------- 71 (313)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCCC-----------C------CCCEEE---EECCCCC----------
T ss_conf 9987504327999850999999999998289-9778-----------8------986588---6332256----------
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 76999999807786799999886420267766654323386799984456876753103589999999996420135899
Q gi|254780606|r 489 EERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLI 568 (744)
Q Consensus 489 ~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihli 568 (744)
..++..|.+..+++... ... -.|-|+||||...|... ...++-..--- =.-....|
T Consensus 72 --------~I~vd~IR~l~~~~~~~---p~~--------g~~KV~II~~ae~m~~~----AaNALLKtLEE-PP~~t~fI 127 (313)
T PRK05564 72 --------SIGVDDIRNIIEEVNKK---PYE--------GDKKVIIIYKSEKMTEQ----AQNAFLKTIEE-PPKGVFII 127 (313)
T ss_pred --------CCCHHHHHHHHHHHHHC---CCC--------CCCEEEEECCHHHHCHH----HHHHHHHCCCC-CCCCEEEE
T ss_conf --------99989999999998408---625--------89569998077775899----99998455036-89985899
Q ss_pred EEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHC
Q ss_conf 9851654444146788505630572036811100326
Q gi|254780606|r 569 MATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTIL 605 (744)
Q Consensus 569 latQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il 605 (744)
|+|..|+ .++++ |+.=. -++-|+--+..+-...|
T Consensus 128 L~t~~~~-~lLpT-I~SRC-Q~~~f~~l~~~~i~~~L 161 (313)
T PRK05564 128 LLCENLE-QILDT-IKSRC-QIYKLNRLSKEDIEKFI 161 (313)
T ss_pred EEECCHH-HCCCH-HHCCC-EEEECCCCCHHHHHHHH
T ss_conf 8649835-47577-87065-35668998999999999
No 343
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=92.91 E-value=0.2 Score=28.81 Aligned_cols=50 Identities=24% Similarity=0.345 Sum_probs=30.6
Q ss_pred CCCEEECC----HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECC
Q ss_conf 88732112----01148469970787534479999999999856801107999723
Q gi|254780606|r 401 SGESVIAD----LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDP 452 (744)
Q Consensus 401 ~g~~~~~d----l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~ 452 (744)
.|+.++-| +.+.-.+-|.|..|||||++++. |++++. -.--++.+.-.|.
T Consensus 13 g~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLlk~-i~Gl~~-p~~G~I~~~g~~i 66 (257)
T PRK13548 13 GGKTVLDDVSLTLRPGEVVAILGPNGAGKSTLLRA-LSGELP-PSSGEVRLFGRPL 66 (257)
T ss_pred CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHH-HHCCCC-CCCCEEEEECEEC
T ss_conf 99998803378986998999999999879999999-856757-7875699936576
No 344
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=92.90 E-value=0.72 Score=24.94 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=30.2
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 011484699707875344799999999998568011079997234
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK 453 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k 453 (744)
|.+.+.+.+.|..|+|||-+--+.-+.++....= =+++++-|-
T Consensus 16 l~~~~iv~~~GpAGtGKT~la~~~al~~l~~~~~--~kiii~Rp~ 58 (205)
T pfam02562 16 IRKNDIVFGIGPAGTGKTYLAVAAAVDALKDGKV--KRIILTRPA 58 (205)
T ss_pred HHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC--CEEEEEECC
T ss_conf 7179807998999860999999999999971894--379997577
No 345
>PRK05642 DNA replication initiation factor; Validated
Probab=92.89 E-value=0.24 Score=28.26 Aligned_cols=64 Identities=17% Similarity=0.369 Sum_probs=38.0
Q ss_pred EEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCC--CHHHHHHCCCCEEEEECCC
Q ss_conf 99844568767531035899999999964201358999851654444--1467885056305720368
Q gi|254780606|r 532 VIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDV--ITGTIKANFPIRISFQVTS 597 (744)
Q Consensus 532 vvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~v--i~~~ik~n~~~ri~~~v~~ 597 (744)
+|+||.+..+. ...+.|..+-.|--..+..|-.||+++-+|-.+. .-..++.-|.+=..|++..
T Consensus 100 ~l~IDDi~~i~--g~~~~e~~lF~l~N~~~~~~~~llits~~~P~~l~~~l~DL~SRl~~~~~~~i~~ 165 (234)
T PRK05642 100 LVCIDDLDVIA--GKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPVKLPDLKSRLTLALVFQMRG 165 (234)
T ss_pred EEEEECHHHHC--CCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHHHHHHCCCEEEECC
T ss_conf 89893645546--8859999999999999983995999578795552300167999995781275148
No 346
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.88 E-value=0.18 Score=29.07 Aligned_cols=62 Identities=18% Similarity=0.304 Sum_probs=30.4
Q ss_pred CEEEEEEECCCCCEEECCHHH--CCCEEEEECCCCCHHHHHHHHHHHHHHHCCHH---HEEEEEECC
Q ss_conf 368984205788732112011--48469970787534479999999999856801---107999723
Q gi|254780606|r 391 NLALCLGKTISGESVIADLAN--MPHILVAGTTGSGKSVAINTMIMSLLYRLRPD---ECRMIMVDP 452 (744)
Q Consensus 391 ~l~~~~g~~~~g~~~~~dl~~--~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~---~~~~~liD~ 452 (744)
+|--++|+|-+=+-++-=|++ -...++-|-.|-|||..+..+..-++...-|+ ..+++-+|.
T Consensus 176 kldpvIGRd~EI~r~i~IL~RR~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~I~~LDl 242 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 242 (857)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEH
T ss_conf 9998858299999999997025789975878999889999999999998389997881690247338
No 347
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.85 E-value=0.71 Score=24.99 Aligned_cols=149 Identities=17% Similarity=0.277 Sum_probs=68.4
Q ss_pred CHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC-----CC---CCEECCCCCCCCEEEEEEECHHHHHH
Q ss_conf 20114846997078753447999999999985680110799972-----34---21000125775200004444178768
Q gi|254780606|r 408 DLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD-----PK---MLELSVYDGIPHLLTPVVTNPKKAVM 479 (744)
Q Consensus 408 dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD-----~k---~~~~~~~~~~ph~~~~v~~~~~~~~~ 479 (744)
++.+.--+-|-|.+|.|||++|| +|.+|. .|+.=.+.+-+ |+ ++-|-.|.-+|.+ + |..|..-...
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLr-iiAGL~---~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~-T-v~~NV~l~l~ 98 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLR-LIAGLE---KPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWL-T-VLDNVALGLE 98 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHH-HHHCCC---CCCCCEEEECCCCCCCCCCCEEEEECCCCCCCHH-H-HHHHHEEHHH
T ss_conf 87799799998999788999999-996878---7777559988821578998779992667645146-6-8844350441
Q ss_pred HHHHHHHHHH-HHHHHHHHCCCCCHH---------HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHH-HHHHHHHCCHH
Q ss_conf 9999998667-699999980778679---------999988642026776665432338679998445-68767531035
Q gi|254780606|r 480 ALKWAVREME-ERYRKMSHLSVRNIK---------SYNERISTMYGEKPQGCGDDMRPMPYIVIIVDE-MADLMMVAGKE 548 (744)
Q Consensus 480 ~l~~~~~em~-~r~~~~~~~~~~~i~---------~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE-~a~l~~~~~~~ 548 (744)
.-.....|.+ +-.+++...|..... +-.+|++-.+.-. .-|.|+ ..|| |..|-......
T Consensus 99 ~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~---------~~P~lL-LlDEPFgALDalTR~~ 168 (248)
T COG1116 99 LRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALA---------TRPKLL-LLDEPFGALDALTREE 168 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHH---------CCCCEE-EECCCCCHHHHHHHHH
T ss_conf 256561768999999999759742101696001847999999999971---------499979-8769741201999999
Q ss_pred HHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 899999999964201358999851654
Q gi|254780606|r 549 IEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 549 ~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
+.+.+.+|-+.-| .-+++-|-.-+
T Consensus 169 lq~~l~~lw~~~~---~TvllVTHdi~ 192 (248)
T COG1116 169 LQDELLRLWEETR---KTVLLVTHDVD 192 (248)
T ss_pred HHHHHHHHHHHHC---CEEEEEECCHH
T ss_conf 9999999999649---88999908989
No 348
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=92.83 E-value=0.14 Score=29.80 Aligned_cols=37 Identities=24% Similarity=0.251 Sum_probs=25.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC
Q ss_conf 6997078753447999999999985680110799972
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD 451 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD 451 (744)
+-|||.+|||||++-+.++..|-.......+-++=.|
T Consensus 37 IgIaG~pGSGKSTlA~~l~~~L~~~~~~~~~~~vpmD 73 (230)
T PRK09270 37 VGIAGPPGAGKSTLAETLWEALSQQGPELPAIQVPMD 73 (230)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 9998999889999999999998623799857997365
No 349
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.83 E-value=0.74 Score=24.87 Aligned_cols=188 Identities=15% Similarity=0.152 Sum_probs=82.1
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCE-----------ECCCCCCCCEEEEE-EECHHH
Q ss_conf 011484699707875344799999999998568011079997234210-----------00125775200004-444178
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLE-----------LSVYDGIPHLLTPV-VTNPKK 476 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~-----------~~~~~~~ph~~~~v-~~~~~~ 476 (744)
+-+.--+||.|..|+|||.|...++...+-. -+.+-++-+|-...+ +..|...-++...- ......
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g~l~i~d~~~~~~~ 97 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEESPEELLENARSFGWDLEVYIEKGKLAILDAFLSEKG 97 (260)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHC--CCEEEEEEEECCHHHHHHHHHHCCCCHHHHHHCCEEEEEECCCCCCC
T ss_conf 8899789999389986899999999977626--98589999206989999999880997789754440687631211125
Q ss_pred HHH-HHH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHH--HCCHHHHH
Q ss_conf 768-999--9998667699999980778679999988642026776665432338679998445687675--31035899
Q gi|254780606|r 477 AVM-ALK--WAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMM--VAGKEIEG 551 (744)
Q Consensus 477 ~~~-~l~--~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~--~~~~~~e~ 551 (744)
... ... ....++..+ |..+- ..++..++|||-+..+.. ......-.
T Consensus 98 ~~~~~~~~~~~~~~l~~~-----------I~~~~------------------~~~~~~~~ViDsi~~~~~~~~~~~~~r~ 148 (260)
T COG0467 98 LVSIVVGDPLDLEELLDR-----------IREIV------------------EKEGADRVVIDSITELTLYLNDPALVRR 148 (260)
T ss_pred CCCCCCCCCCCHHHHHHH-----------HHHHH------------------HHCCCCEEEEECCHHHHHHCCCHHHHHH
T ss_conf 420104665228999999-----------99999------------------8628988999663077665278257899
Q ss_pred HHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCCHHHHCCCCCEE-EECCC-CCEE
Q ss_conf 999999964201358999851654444146788505630572036811100326763168856898468-64689-8438
Q gi|254780606|r 552 AIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDML-YMSGG-GRIQ 629 (744)
Q Consensus 552 ~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~gae~l~g~gd~l-~~~~~-~~~~ 629 (744)
.+.++.+.-+..|+-.++.++-+....-.+ .+.-+ -+|.-+.|+....+....+.-|. ++..+ ....
T Consensus 149 ~~~~l~~~~~~~~~t~~~~~~~~~~~~~~~-------~~~~~----~vdgvI~l~~~~~~~~~~r~~~~i~k~r~~~~~~ 217 (260)
T COG0467 149 ILLLLKRFLKKLGVTSLLTTEAPVEERGES-------GVEEY----IVDGVIRLDLKEIEGGGDRRYLRILKMRGTPHSL 217 (260)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCCCCC-------CCEEE----EEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCC
T ss_conf 999999876506848999974433466656-------61421----6899999977722572488899998346733577
Q ss_pred EEEECCCCH
Q ss_conf 999343898
Q gi|254780606|r 630 RVHGPLVSD 638 (744)
Q Consensus 630 r~~~~~~~~ 638 (744)
+.+-.-+.+
T Consensus 218 ~~~~~~i~~ 226 (260)
T COG0467 218 KVIPFEITD 226 (260)
T ss_pred CEEEEEEEC
T ss_conf 459999827
No 350
>COG1204 Superfamily II helicase [General function prediction only]
Probab=92.81 E-value=0.4 Score=26.71 Aligned_cols=43 Identities=21% Similarity=0.150 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCHH
Q ss_conf 78899889999998740355138986764892589997548886399
Q gi|254780606|r 287 HEILEKNAGSLETILEEFGIKGEIINVNPGPVVTLYEFEPAPGIKSS 333 (744)
Q Consensus 287 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gp~~~~~~~~~~~g~~~~ 333 (744)
+.-.+++.+.+. .|+.||+++.+. .|=.-..+|.....+|=|.
T Consensus 86 kALa~Ek~~~~~-~~~~~GirV~~~---TgD~~~~~~~l~~~~ViVt 128 (766)
T COG1204 86 KALAEEKYEEFS-RLEELGIRVGIS---TGDYDLDDERLARYDVIVT 128 (766)
T ss_pred HHHHHHHHHHHH-HHHHCCCEEEEE---CCCCCCCHHHHCCCCEEEE
T ss_conf 999999999866-688659779996---4886555334145887997
No 351
>PRK07667 uridine kinase; Provisional
Probab=92.72 E-value=0.091 Score=31.10 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=18.9
Q ss_pred EEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9970787534479999999999
Q gi|254780606|r 416 LVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 416 lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
-|+|.+|||||.|-+.|.-.|-
T Consensus 18 gIaG~sgSGKTTla~~L~~~l~ 39 (190)
T PRK07667 18 GIDGLSRSGKTTFVANLKENMK 39 (190)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
T ss_conf 9779897889999999999986
No 352
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.70 E-value=0.45 Score=26.34 Aligned_cols=199 Identities=22% Similarity=0.272 Sum_probs=96.1
Q ss_pred EEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHH
Q ss_conf 42057887321120114846997078753447999999999985680110799972342100012577520000444417
Q gi|254780606|r 396 LGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPK 475 (744)
Q Consensus 396 ~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~ 475 (744)
+|++..-.-+...+..+-|+|+-|-+|.|||.+.+++...+- ..|+-|.+. +++ ++.
T Consensus 27 ~g~~~~~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l~-------~~~~~i~~t----------~~l------~p~ 83 (329)
T COG0714 27 VGDEEVIELALLALLAGGHVLLEGPPGVGKTLLARALARALG-------LPFVRIQCT----------PDL------LPS 83 (329)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHC-------CCCEEEECC----------CCC------CHH
T ss_conf 266999999999998599778779898777999999999838-------981899568----------998------888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEE---EEEHHHHHHHHHHCCHHHHHH
Q ss_conf 87689999998667699999980778679999988642026776665432338679---998445687675310358999
Q gi|254780606|r 476 KAVMALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYI---VIIVDEMADLMMVAGKEIEGA 552 (744)
Q Consensus 476 ~~~~~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~i---vvviDE~a~l~~~~~~~~e~~ 552 (744)
.......+...+.+ .+... +. . .+++.= ++.+||+.. +..++...
T Consensus 84 d~~G~~~~~~~~~~--------~~~~~--------------~~--~----gpl~~~~~~ill~DEInr----a~p~~q~a 131 (329)
T COG0714 84 DLLGTYAYAALLLE--------PGEFR--------------FV--P----GPLFAAVRVILLLDEINR----APPEVQNA 131 (329)
T ss_pred HHCCHHHHHHHHCC--------CCEEE--------------EE--C----CCCCCCCCEEEEEECCCC----CCHHHHHH
T ss_conf 82056888766425--------77189--------------84--6----873345133899870345----89889999
Q ss_pred HHHHHHH----------HHCCEEEEEEEECCC----CCCCCHHHHHHCCCCEEEEECC-CHHHCCHHCCCCCH-HHHCCC
Q ss_conf 9999996----------420135899985165----4444146788505630572036-81110032676316-885689
Q gi|254780606|r 553 IQRLAQM----------ARAAGIHLIMATQRP----SVDVITGTIKANFPIRISFQVT-SKIDSRTILGEHGA-EQLLGR 616 (744)
Q Consensus 553 ~~~la~~----------~ra~GihlilatQrp----~~~vi~~~ik~n~~~ri~~~v~-~~~dsr~il~~~ga-e~l~g~ 616 (744)
+...-+. -+.--..+++|||.| ...-++--++..|..++-+.-. +...-+.|+-..+. ..+.
T Consensus 132 Ll~~l~e~~vt~~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~-- 209 (329)
T COG0714 132 LLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVGGVDELD-- 209 (329)
T ss_pred HHHHHHHCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCC--
T ss_conf 999997268970796653379987899826867657887899888810388776489973889999987365644320--
Q ss_pred CCEEEE--CCCCCEEE----EEECCCCHHHHHHHHHHHHHC
Q ss_conf 846864--68984389----993438988999999999840
Q gi|254780606|r 617 GDMLYM--SGGGRIQR----VHGPLVSDIEIEKVVQHLKKQ 651 (744)
Q Consensus 617 gd~l~~--~~~~~~~r----~~~~~~~~~~~~~~~~~~~~~ 651 (744)
...+-. ..-...+| +.+..++++-+..++..+..-
T Consensus 210 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 250 (329)
T COG0714 210 LESLVKPVLSDEELLRLQKEVKKVPVSDEVIDYIVTLVAAL 250 (329)
T ss_pred HHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 23446654287999987665248876199999999999830
No 353
>pfam10443 RNA12 RNA12 protein. This family includes RNA12 from S. cerevisiae. That protein contains an RRM domain. This region is C-terminal to that and includes a P-loop motif suggesting this region binds to NTP. The RNA12 proteins is involved in pre-rRNA maturation.
Probab=92.69 E-value=0.58 Score=25.61 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=31.2
Q ss_pred HHHHHHHHH-CCCEEEEEEECCCCCCHHH-HHHHHHHHHHCCCCCHHHCCC-CCCCE
Q ss_conf 999999997-4986232200000100789-999999999879757021688-62321
Q gi|254780606|r 686 AKAVDLVID-NQRCSTSFIQRRLQIGYNR-AALLVERMEQEGLVSEADHVG-KRHVF 739 (744)
Q Consensus 686 ~~~~~~~~~-~~~~s~s~~qr~~~~g~~r-a~~~~~~~e~~g~~~~~~~~~-~r~~~ 739 (744)
+||..+|.. .+..|++|-+=-|+-=|.- .-..+..||+.++|+=....| |..|-
T Consensus 320 eQaW~lIk~La~~~~v~Y~~ll~~~lFk~~~E~~l~~LE~aeLIsv~~~~Grp~~I~ 376 (428)
T pfam10443 320 EQAWELIKKLSKNGSIPYNELLLSPLFKGSGETALRALEQAELISVTRDNGRPSKIR 376 (428)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf 999999999713895319998843102698279999998679479982488356654
No 354
>KOG2655 consensus
Probab=92.67 E-value=0.088 Score=31.21 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=23.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHC
Q ss_conf 469970787534479999999999856
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRL 440 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~ 440 (744)
-+||+|..|.|||.|+|+|...-++.+
T Consensus 23 tlmvvG~sGlGKsTfiNsLf~~~l~~~ 49 (366)
T KOG2655 23 TLMVVGESGLGKSTFINSLFLTDLSGN 49 (366)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 899855887638899988886532577
No 355
>PRK01172 ski2-like helicase; Provisional
Probab=92.50 E-value=0.56 Score=25.70 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=18.0
Q ss_pred HHHHHHHHHH----CCEEEEEEEECCCCCCCCHHHHH
Q ss_conf 9999999642----01358999851654444146788
Q gi|254780606|r 552 AIQRLAQMAR----AAGIHLIMATQRPSVDVITGTIK 584 (744)
Q Consensus 552 ~~~~la~~~r----a~GihlilatQrp~~~vi~~~ik 584 (744)
..+-.+|-|| ..|.-+|+|.+.-..+.+...+.
T Consensus 353 ~~QM~GRAGR~g~D~~G~~ii~~~~~~~~~~~~~~l~ 389 (674)
T PRK01172 353 IKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLS 389 (674)
T ss_pred HHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHC
T ss_conf 9986135899999988708999728228999999852
No 356
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=92.48 E-value=0.82 Score=24.57 Aligned_cols=34 Identities=32% Similarity=0.571 Sum_probs=24.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC
Q ss_conf 46997078753447999999999985680110799972
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD 451 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD 451 (744)
-+.|-|--|||||+..+.++.|+. -|++-.++||
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~----~d~~~~v~i~ 86 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLN----EDQVAVVVID 86 (269)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCC----CCCEEEEEEC
T ss_conf 599974477763699999998557----8851799835
No 357
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=92.41 E-value=0.18 Score=29.06 Aligned_cols=37 Identities=32% Similarity=0.584 Sum_probs=30.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 699707875344799999999998568011079997234
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK 453 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k 453 (744)
+=|.|..|+|||.|++.++..|.-+ -..+-++-+||-
T Consensus 2 iGitG~pGaGKStLi~~l~~~~~~~--g~~VaVlavDPs 38 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRAR--GKRVAVLAIDPS 38 (148)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHC--CCEEEEEEECCC
T ss_conf 7625899787899999999999978--983799996888
No 358
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=92.37 E-value=0.84 Score=24.48 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=23.0
Q ss_pred CEEEEECCCCCHHHH-HHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 469970787534479-9999999998568011079997234
Q gi|254780606|r 414 HILVAGTTGSGKSVA-INTMIMSLLYRLRPDECRMIMVDPK 453 (744)
Q Consensus 414 H~lvaG~TgsGKS~~-l~~~i~sl~~~~~p~~~~~~liD~k 453 (744)
++++..-||||||.+ +-.++-.+......+..+.+++=|-
T Consensus 38 dvi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~PT 78 (203)
T cd00268 38 DVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPT 78 (203)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECC
T ss_conf 88997579972228888699999861667689669999687
No 359
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.35 E-value=0.12 Score=30.20 Aligned_cols=52 Identities=23% Similarity=0.272 Sum_probs=31.2
Q ss_pred CCCCEEECC----HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 788732112----011484699707875344799999999998568011079997234
Q gi|254780606|r 400 ISGESVIAD----LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK 453 (744)
Q Consensus 400 ~~g~~~~~d----l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k 453 (744)
-++++++-| +.+.=++.|.|.+|||||++++. |++|+ ...--++.+--.|.+
T Consensus 14 ~~~~~vL~~isl~i~~Ge~v~ivG~sGsGKSTLl~l-l~gl~-~p~~G~I~i~g~~i~ 69 (221)
T cd03244 14 PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLA-LFRLV-ELSSGSILIDGVDIS 69 (221)
T ss_pred CCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHH-HHCCC-CCCCCEEEECCEECC
T ss_conf 999751754489986998999999999989999999-96797-189848999999966
No 360
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=92.33 E-value=0.12 Score=30.24 Aligned_cols=36 Identities=22% Similarity=0.439 Sum_probs=26.7
Q ss_pred CCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 887321120----1148469970787534479999999999
Q gi|254780606|r 401 SGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 401 ~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
.|.++.-|+ .+.=.+.|.|.+|||||++|+. |++++
T Consensus 12 ~~~~vL~~inl~i~~Ge~~~IvG~sGsGKSTLl~~-l~g~~ 51 (218)
T cd03290 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLA-ILGEM 51 (218)
T ss_pred CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHH-HHCCC
T ss_conf 99905647699986999999999999809999999-85556
No 361
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.32 E-value=0.12 Score=30.40 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=23.6
Q ss_pred ECCHHHCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 11201148469970787534479999999999
Q gi|254780606|r 406 IADLANMPHILVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 406 ~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
-+++.+.-.+.|-|.+|||||++++.|+ +++
T Consensus 25 sl~i~~Ge~~~IvG~sGsGKSTLl~~i~-G~~ 55 (204)
T cd03250 25 NLEVPKGELVAIVGPVGSGKSSLLSALL-GEL 55 (204)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHC-CCC
T ss_conf 8997699899999999985899999981-895
No 362
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=92.31 E-value=0.08 Score=31.48 Aligned_cols=21 Identities=33% Similarity=0.705 Sum_probs=18.0
Q ss_pred CCEEEEECCCCCHHHHHHHHH
Q ss_conf 846997078753447999999
Q gi|254780606|r 413 PHILVAGTTGSGKSVAINTMI 433 (744)
Q Consensus 413 PH~lvaG~TgsGKS~~l~~~i 433 (744)
+-++++|.||+|||.+|+.+-
T Consensus 138 ~~~vl~G~TG~GKT~lL~~L~ 158 (333)
T PRK11784 138 PLVVLGGMTGSGKTRLLQALA 158 (333)
T ss_pred CCEEEECCCCCCHHHHHHHHH
T ss_conf 859986788877899999999
No 363
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=92.30 E-value=0.1 Score=30.70 Aligned_cols=27 Identities=37% Similarity=0.511 Sum_probs=23.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHC
Q ss_conf 469970787534479999999999856
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRL 440 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~ 440 (744)
-+|++|..|+|||+|+|+++-..+...
T Consensus 25 ~im~~G~sG~GKttfiNtL~~~~l~~~ 51 (373)
T COG5019 25 TIMVVGESGLGKTTFINTLFGTSLVDE 51 (373)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 899962788755578876567652577
No 364
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=92.29 E-value=0.86 Score=24.42 Aligned_cols=168 Identities=20% Similarity=0.312 Sum_probs=99.0
Q ss_pred CEEEEEEECCCCCEEECCHH----HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEEC--------
Q ss_conf 36898420578873211201----148469970787534479999999999856801107999723421000--------
Q gi|254780606|r 391 NLALCLGKTISGESVIADLA----NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELS-------- 458 (744)
Q Consensus 391 ~l~~~~g~~~~g~~~~~dl~----~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~-------- 458 (744)
.|.=..|.+..-+=|.+|+. ..==++..|..|||||++|. +|-+| .....-.|+++--+.++..-.
T Consensus 6 ~LnHyyG~G~~rkQvL~di~L~i~~GEiViltGPSGSGKTTLLt-LiG~L-R~~Q~G~L~vlg~~L~ga~~~~l~~~RR~ 83 (220)
T TIGR02982 6 NLNHYYGEGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLT-LIGGL-RSVQEGSLKVLGQELKGASKKELVQVRRN 83 (220)
T ss_pred CCCCEECCCCCCCEEECCCCEEECCCEEEEEECCCCCCHHHHHH-HHHHH-CCCCCCEEEEECCHHCCCCHHHHHHHHHH
T ss_conf 34411146874210012763177176479843788984688999-88762-56555604782201026788899999876
Q ss_pred ---CCCCCCCEEEEEEE---CHHHHHHHHHHH-HHHHH-HHHHHHHHCCCCCHHHHH---------HHHHHHHCCCCCCC
Q ss_conf ---12577520000444---417876899999-98667-699999980778679999---------98864202677666
Q gi|254780606|r 459 ---VYDGIPHLLTPVVT---NPKKAVMALKWA-VREME-ERYRKMSHLSVRNIKSYN---------ERISTMYGEKPQGC 521 (744)
Q Consensus 459 ---~~~~~ph~~~~v~~---~~~~~~~~l~~~-~~em~-~r~~~~~~~~~~~i~~~n---------~~~~~~~~~~~~~~ 521 (744)
+|.. -.|+. ..| |...+......+ ..++. +-.+++...|..+--.|. +|++..+.=
T Consensus 84 iGyIFQ~-HNLl~-~LTA~QNVqM~~eL~~~~~~~~~~~~a~~~L~~VGL~~~~~y~P~~LSGGQKQRVAIARAL----- 156 (220)
T TIGR02982 84 IGYIFQA-HNLLG-FLTARQNVQMALELQPNLSAQEAREKARAMLEAVGLGDRLDYYPENLSGGQKQRVAIARAL----- 156 (220)
T ss_pred CCCEECC-CHHCH-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCHHHHHHHHHH-----
T ss_conf 3914412-00010-0017788864898876116889999999999860601255405243678616899999997-----
Q ss_pred CCCCCCCCEEEEEHHH-HHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 5432338679998445-68767531035899999999964201358999851654
Q gi|254780606|r 522 GDDMRPMPYIVIIVDE-MADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 522 ~~~~~~~p~ivvviDE-~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
-.-|.||.. || -|.|=...+++|-+.+.+| ||--|.=+++-|--+.
T Consensus 157 ----v~~P~LvLA-DEPTAALD~~SGr~VV~Lm~~l---A~eqGc~iL~VTHD~R 203 (220)
T TIGR02982 157 ----VARPKLVLA-DEPTAALDSKSGRDVVELMQKL---AREQGCTILLVTHDNR 203 (220)
T ss_pred ----HCCCCEEEC-CCCCHHHHHCCCHHHHHHHHHH---HHHHCCEEEEEECCCC
T ss_conf ----338976762-5772332211338999999998---8771988999836731
No 365
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.29 E-value=0.5 Score=26.04 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=26.6
Q ss_pred ECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEE
Q ss_conf 1120114846997078753447999999999985680110799
Q gi|254780606|r 406 IADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMI 448 (744)
Q Consensus 406 ~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~ 448 (744)
-+++.+.-.+-+.|..|||||++++. |++++ .|+.=++.
T Consensus 20 sl~i~~Gei~~lvG~nGaGKSTl~~~-i~Gl~---~p~~G~i~ 58 (163)
T cd03216 20 SLSVRRGEVHALLGENGAGKSTLMKI-LSGLY---KPDSGEIL 58 (163)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHH-HHCCC---CCCCCEEE
T ss_conf 88987998999998899899999999-95776---89857899
No 366
>KOG0952 consensus
Probab=92.27 E-value=0.15 Score=29.72 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=33.1
Q ss_pred EEEEHHHHHHHHHHCCHHHHHHHHHHHHHH--HCCEEEEEEE-ECCCCCCCCHHHHHHC
Q ss_conf 999844568767531035899999999964--2013589998-5165444414678850
Q gi|254780606|r 531 IVIIVDEMADLMMVAGKEIEGAIQRLAQMA--RAAGIHLIMA-TQRPSVDVITGTIKAN 586 (744)
Q Consensus 531 ivvviDE~a~l~~~~~~~~e~~~~~la~~~--ra~Gihlila-tQrp~~~vi~~~ik~n 586 (744)
-+|||||..-|-..-|.-+|..++|.-++- -..+|++|-- .-=|.-.-+-.-+|.|
T Consensus 240 ~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn 298 (1230)
T KOG0952 240 RLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVN 298 (1230)
T ss_pred EEEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHCCC
T ss_conf 04885300121576640699999999999885420057888624578779999986678
No 367
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=92.24 E-value=0.57 Score=25.67 Aligned_cols=153 Identities=20% Similarity=0.300 Sum_probs=65.2
Q ss_pred CCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHC-----CHHHEEEEEEC--CCC--CEEC---CCCCCC
Q ss_conf 887321120----1148469970787534479999999999856-----80110799972--342--1000---125775
Q gi|254780606|r 401 SGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRL-----RPDECRMIMVD--PKM--LELS---VYDGIP 464 (744)
Q Consensus 401 ~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~-----~p~~~~~~liD--~k~--~~~~---~~~~~p 464 (744)
+|...+-++ ...-|+||-|..|+|||.++++| .+|=-.. .|.+.+++.+= |+. +.|. .|-+..
T Consensus 404 ~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRai-aGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~ 482 (604)
T COG4178 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRAL-AGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAA 482 (604)
T ss_pred CCCEEECCCEEEECCCCEEEEECCCCCCHHHHHHHH-HCCCCCCCCCEECCCCCCEEEECCCCCCCCCCHHHHHHCCCCC
T ss_conf 987421465265479987998789998788999999-6458567874416898755771488777876589998089997
Q ss_pred CEEEEEEECHHHHHHHHHH-----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHH
Q ss_conf 2000044441787689999-----99866769999998077867999998864202677666543233867999844568
Q gi|254780606|r 465 HLLTPVVTNPKKAVMALKW-----AVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMA 539 (744)
Q Consensus 465 h~~~~v~~~~~~~~~~l~~-----~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a 539 (744)
| . +. .++...+|.. ++..|++--+.-.... .+-.+|++..+.-.. -| -+||+||--
T Consensus 483 ~---~-~~-d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS----~GEqQRlafARilL~---------kP-~~v~LDEAT 543 (604)
T COG4178 483 P---D-FS-DAELVAVLHKVGLGDLAERLDEEDRWDRVLS----GGEQQRLAFARLLLH---------KP-KWVFLDEAT 543 (604)
T ss_pred C---C-CC-HHHHHHHHHHCCCHHHHHHHHCCCCHHHHCC----HHHHHHHHHHHHHHC---------CC-CEEEEECCH
T ss_conf 7---7-99-5999999998191989998733275766458----527899999999970---------99-989980601
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHC--CEEEEEEEECCCCCCCC
Q ss_conf 76753103589999999996420--13589998516544441
Q gi|254780606|r 540 DLMMVAGKEIEGAIQRLAQMARA--AGIHLIMATQRPSVDVI 579 (744)
Q Consensus 540 ~l~~~~~~~~e~~~~~la~~~ra--~GihlilatQrp~~~vi 579 (744)
.-+. .+.|. ++-|+-+. -++-+|--.+|++...+
T Consensus 544 sALD---e~~e~---~l~q~l~~~lp~~tvISV~Hr~tl~~~ 579 (604)
T COG4178 544 SALD---EETED---RLYQLLKEELPDATVISVGHRPTLWNF 579 (604)
T ss_pred HCCC---HHHHH---HHHHHHHHHCCCCEEEEECCCHHHHHH
T ss_conf 1259---57899---999999854899789995560005788
No 368
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=92.12 E-value=0.22 Score=28.53 Aligned_cols=37 Identities=32% Similarity=0.520 Sum_probs=31.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 699707875344799999999998568011079997234
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK 453 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k 453 (744)
+-|.|..|+|||.|+..++..|. ..-..|-++-|||.
T Consensus 52 iGiTG~pG~GKStli~~l~~~~~--~~g~~v~vlavDPs 88 (325)
T PRK09435 52 IGITGVPGVGKSTFIEALGMHLI--EQGHKVAVLAVDPS 88 (325)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH--HCCCEEEEEEECCC
T ss_conf 97427999868899999999999--67985899997899
No 369
>pfam00580 UvrD-helicase UvrD/REP helicase. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Bacillus subtilis addA and Escherichia coli exodeoxyribonuclease V beta have large insertions near to the carboxy-terminus relative to other members of the family.
Probab=92.10 E-value=0.66 Score=25.23 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=10.0
Q ss_pred EEEEEHHHHHHHHH
Q ss_conf 79998445687675
Q gi|254780606|r 530 YIVIIVDEMADLMM 543 (744)
Q Consensus 530 ~ivvviDE~a~l~~ 543 (744)
|-.|+||||.|.-.
T Consensus 213 ~~~ilVDEfQDtn~ 226 (494)
T pfam00580 213 FKYILVDEFQDTNP 226 (494)
T ss_pred CCEEECHHHCCCHH
T ss_conf 72654034302649
No 370
>PRK07429 phosphoribulokinase; Provisional
Probab=92.08 E-value=0.17 Score=29.20 Aligned_cols=213 Identities=20% Similarity=0.262 Sum_probs=94.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECC-CCCEE--CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHH
Q ss_conf 69970787534479999999999856801107999723-42100--0125775200004444178768999999866769
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDP-KMLEL--SVYDGIPHLLTPVVTNPKKAVMALKWAVREMEER 491 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~-k~~~~--~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r 491 (744)
+-|||.+|||||.+.+.|+-- ...+.+-++-.|- -..+. ....++-|+ .|-..|.+ .|..-
T Consensus 11 IGIAGgSGSGKTTv~r~I~~~----fg~~~VtvI~~DdYhk~dr~~r~~~~~t~l-hP~And~d-----------Ll~e~ 74 (331)
T PRK07429 11 IGVAGDSGCGKSTFLRRLADL----FGEELVTVICLDDYHSLDRKQRKEIGITAL-DPRANNFD-----------LMYEQ 74 (331)
T ss_pred EEEECCCCCCHHHHHHHHHHH----HCCCCEEEEECCCCCCCCHHHHHHCCCCCC-CCCHHCHH-----------HHHHH
T ss_conf 998578877899999999998----388877999478677788788987189878-96400599-----------99999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHH--------HHHHHHH-----HCCHH----------
Q ss_conf 999998077867999998864202677666543233867999844--------5687675-----31035----------
Q gi|254780606|r 492 YRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVD--------EMADLMM-----VAGKE---------- 548 (744)
Q Consensus 492 ~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviD--------E~a~l~~-----~~~~~---------- 548 (744)
...+.....-++--||..-. .+. ....+. |.=||||+ ++.++|. +...+
T Consensus 75 L~~Lk~Gk~I~~PvYdh~tg----~~~--~~~~I~--P~~vIIvEGLh~L~~~~lR~l~DlKIFVD~d~diR~~rRI~RD 146 (331)
T PRK07429 75 LKALKTGQPILKPIYNHETG----KID--PPEYIK--PNKIVVVEGLHPLYDERVRDLYDFKVYLDPPDEVKIAWKIKRD 146 (331)
T ss_pred HHHHHCCCCCCCCCCCCCCC----CCC--CCEEEC--CCCEEEEECCHHCCCHHHHHHCCEEEEECCCHHHHHHHHHHHH
T ss_conf 99998599725652356478----778--866606--8867999161212879899754937996487889999988877
Q ss_pred -------HHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHH----------HCCCCEEEEECCC-HHHCCHHCCCCCH
Q ss_conf -------899999999964201358999851654444146788----------5056305720368-1110032676316
Q gi|254780606|r 549 -------IEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIK----------ANFPIRISFQVTS-KIDSRTILGEHGA 610 (744)
Q Consensus 549 -------~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik----------~n~~~ri~~~v~~-~~dsr~il~~~ga 610 (744)
.|..+..|-+ |.--..--+..|+--+|+|=..+- -.+..|+-+|-.- .-|.--++|++.-
T Consensus 147 v~ERG~s~E~Vl~qi~~--RkpD~~~yI~PQk~~ADiVI~~~p~~~~~~~~~~~~l~vrli~~~~~~~~~~~~~~d~~s~ 224 (331)
T PRK07429 147 MAERGHTYEDVLAEIEK--REPDFEAYIDPQRQYADVVIQVLPTQLIDNDKENKVLRVRLVQRPGIPHPDPVYLFDEGST 224 (331)
T ss_pred HHHHCCCHHHHHHHHHH--CCHHHHHHCCCCHHCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCC
T ss_conf 86618999999999985--1178997668041127289996276678888888558899995079889983244057763
Q ss_pred -----HHHCC--CCCEEEE-CC--CCC---EEEEEECCCCHHHHHHHHHHHHHCCCC
Q ss_conf -----88568--9846864-68--984---389993438988999999999840887
Q gi|254780606|r 611 -----EQLLG--RGDMLYM-SG--GGR---IQRVHGPLVSDIEIEKVVQHLKKQGCP 654 (744)
Q Consensus 611 -----e~l~g--~gd~l~~-~~--~~~---~~r~~~~~~~~~~~~~~~~~~~~~~~~ 654 (744)
.+|.. .|-++++ +. -|+ .+-+-|-|- .+|+..|-.++..-+.-
T Consensus 225 i~w~p~~l~~~~pg~~~~~~~d~~~g~~v~vle~Dg~~~-~~~~~~~E~~l~~~~~k 280 (331)
T PRK07429 225 IDWRPRKLTCSYPGIALRYGPDRYMGKPVSVLEVDGQFD-NEEVIYLEDHLSNTSTK 280 (331)
T ss_pred CCCCCCCCCCCCCCCEEEECCHHHCCCEEEEEEECCCCC-HHHHHHHHHHHHCCCCC
T ss_conf 124543357899774689646244596404998558769-89999999997535772
No 371
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR); InterPro: IPR005291 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are integral membrane proteins and they are involved in the transport of chloride ions. Many of these proteins are the cystis fibrosis transmembrane conductor regulators (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.; GO: 0005254 chloride channel activity, 0006811 ion transport, 0016020 membrane.
Probab=92.07 E-value=0.1 Score=30.78 Aligned_cols=110 Identities=20% Similarity=0.234 Sum_probs=58.3
Q ss_pred CCCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCC--CC-----CEEE
Q ss_conf 7887321120----11484699707875344799999999998568011079997234210001257--75-----2000
Q gi|254780606|r 400 ISGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDG--IP-----HLLT 468 (744)
Q Consensus 400 ~~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~--~p-----h~~~ 468 (744)
..+.||.-|+ -|.--+-|||.||||||.+|. ||++=| -|.+=|+- --.+..|+.=-. .| ..+.
T Consensus 436 L~vTPVLK~I~~~lEkG~lLAvAGSTGsGKsSLLM-MI~GEL---~PSeGKIk--HSGRISfs~Q~sWIMPGTIkdNI~F 509 (1534)
T TIGR01271 436 LYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLM-MILGEL---EPSEGKIK--HSGRISFSPQVSWIMPGTIKDNIIF 509 (1534)
T ss_pred HHCCCEEEECCEEEECCCEEEEECCCCCHHHHHHH-HHHCCC---CCCCCEEE--EEEEEEECCCCCCCCCCCCHHCEEE
T ss_conf 41164334010143044157874367750789999-986034---37997163--1004752578885578740001455
Q ss_pred EEEECHHHHHHHHHHHHHHHHH------HHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 0444417876899999986676------9999998077867999998864202
Q gi|254780606|r 469 PVVTNPKKAVMALKWAVREMEE------RYRKMSHLSVRNIKSYNERISTMYG 515 (744)
Q Consensus 469 ~v~~~~~~~~~~l~~~~~em~~------r~~~~~~~~~~~i~~~n~~~~~~~~ 515 (744)
.+-.|.-....+.+.|.-|-+- =...+.+.|+.-=.+=++|+.-.+.
T Consensus 510 GlsYDEyRY~SVi~ACQLEED~~~~p~KD~~~L~eGGiTLSGGQRARIsLARA 562 (1534)
T TIGR01271 510 GLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARA 562 (1534)
T ss_pred CCCCCHHHHHHHHHHHCHHHHHHHCCCCCCEEECCCCEECCCCHHHHHHHHHH
T ss_conf 13221024455654522035676354447602147776424740578888887
No 372
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=92.06 E-value=0.78 Score=24.72 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=22.8
Q ss_pred EEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 3211201148469970787534479999999999
Q gi|254780606|r 404 SVIADLANMPHILVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 404 ~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
.+-+++.+.=-+-|.|..|||||.+++. |++|+
T Consensus 266 ~vsf~v~~GEivgl~G~nGsGKsTL~~~-l~Gl~ 298 (491)
T PRK10982 266 DVSFDLHKGEILGIAGLVGAKRTDIVET-LFGIR 298 (491)
T ss_pred EEEEEEECCCEEEEECCCCCCHHHHHHH-HHCCC
T ss_conf 2679996896899778999978899999-81986
No 373
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=92.06 E-value=0.34 Score=27.21 Aligned_cols=46 Identities=26% Similarity=0.270 Sum_probs=31.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECC
Q ss_conf 84699707875344799999999998568011079997234210001
Q gi|254780606|r 413 PHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSV 459 (744)
Q Consensus 413 PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~ 459 (744)
|-++|.|..+||||.+++.++-.++-+. -.-+-+.=.|+...+|+.
T Consensus 1 p~v~i~G~~~sGKttl~~~L~~~~~~~g-~~~~~~~~~d~gq~~~~~ 46 (122)
T pfam03205 1 PIVLVVGPKDSGKTTLIRKLLNYLKRRG-YRVAVVKHLDHGQGEIDK 46 (122)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCC
T ss_conf 9799994899989999999999999879-944899989999877689
No 374
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.05 E-value=0.18 Score=29.10 Aligned_cols=33 Identities=33% Similarity=0.464 Sum_probs=24.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC
Q ss_conf 6997078753447999999999985680110799972
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD 451 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD 451 (744)
+-|||.+|||||.+.+++.-- + ..+.+.++-.|
T Consensus 2 IgVaG~SGSGKTTv~~~i~~i-f---g~~~v~vI~~D 34 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSL-F---GSDLVTVICLD 34 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHH-H---CCCCEEEEECC
T ss_conf 899788878699999999998-5---84876999657
No 375
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=92.04 E-value=0.23 Score=28.32 Aligned_cols=38 Identities=32% Similarity=0.521 Sum_probs=31.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 4699707875344799999999998568011079997234
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK 453 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k 453 (744)
-+=|.|..|+|||.|++.++..|+- .-..|-++-|||.
T Consensus 31 ~iGiTG~PGaGKStli~~l~~~~~~--~g~~vaVlAvDPS 68 (267)
T pfam03308 31 RVGITGVPGAGKSTLIEALGMELRR--RGHRVAVLAVDPS 68 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCEEEEEEECCC
T ss_conf 9987689988799999999999996--8986899997899
No 376
>TIGR01631 Trypano_RHS trypanosome RHS family; InterPro: IPR006518 These sequences are full-length and part-length members of the RHS (retrotransposon hot spot) family in Trypanosoma brucei and Trypanosoma cruzi. Members of this family are frequently interrupted by non-LTR retrotransposons inserted at exactly the same relative position. .
Probab=92.02 E-value=0.72 Score=24.94 Aligned_cols=76 Identities=16% Similarity=0.111 Sum_probs=58.8
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEE--ECHHHHHHHHHHHHH
Q ss_conf 1484699707875344799999999998568011079997234210001257752000044--441787689999998
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVV--TNPKKAVMALKWAVR 486 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~--~~~~~~~~~l~~~~~ 486 (744)
...-.++-||-|=|||..+-|.|+--|++|.-+.|+++.-=-++-.+-++...+...+.|. .+.+.+..++..++.
T Consensus 306 ~~~~~vliGTPGIGKS~~vGSfLLy~LLHyd~e~L~~vAYF~~g~AY~F~k~~~G~~G~V~~Y~~~~~a~~~v~~l~~ 383 (814)
T TIGR01631 306 IPERRVLIGTPGIGKSFGVGSFLLYKLLHYDAEKLQVVAYFVKGRAYIFEKSSGGREGRVKFYEKEKAALDVVEALVS 383 (814)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHCHHCCCCEEEEEECCEEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHC
T ss_conf 787728881788525566899997554211000375589997467999971788963057762444036777553550
No 377
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=91.99 E-value=0.17 Score=29.20 Aligned_cols=29 Identities=38% Similarity=0.471 Sum_probs=23.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 84699707875344799999999998568
Q gi|254780606|r 413 PHILVAGTTGSGKSVAINTMIMSLLYRLR 441 (744)
Q Consensus 413 PH~lvaG~TgsGKS~~l~~~i~sl~~~~~ 441 (744)
--..|.|-.|||||.+||.++.-.+.++-
T Consensus 628 ~~t~VTGVSGSGKSTLIn~tL~~a~~~~l 656 (935)
T COG0178 628 VFTCVTGVSGSGKSTLINDTLVPALARHL 656 (935)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 37999836878777869999999999986
No 378
>PHA00350 putative assembly protein
Probab=91.99 E-value=0.11 Score=30.45 Aligned_cols=55 Identities=16% Similarity=0.093 Sum_probs=36.2
Q ss_pred EEEHHHHHHHHHHCCH-------------------HHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCC
Q ss_conf 9984456876753103-------------------58999999999642013589998516544441467885056
Q gi|254780606|r 532 VIIVDEMADLMMVAGK-------------------EIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFP 588 (744)
Q Consensus 532 vvviDE~a~l~~~~~~-------------------~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~ 588 (744)
++||||..++.-.... +-...+...=.+-|-.|.-+||.||... -|...||+-.-
T Consensus 84 liviDE~q~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~HRh~~wDI~L~Tp~~~--~i~~~ir~~~e 157 (402)
T PHA00350 84 LYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRHYNWDIILLTPNIR--KIHSDIRAMIE 157 (402)
T ss_pred EEEEECHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCHH--HHHHHHHHHHH
T ss_conf 899963133246543300233212666420002678845699999973215866799678878--98599999998
No 379
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=91.96 E-value=0.88 Score=24.34 Aligned_cols=154 Identities=14% Similarity=0.240 Sum_probs=67.5
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHH
Q ss_conf 21120114846997078753447999999999985680110799972342100012577520000444417876899999
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWA 484 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~ 484 (744)
|-+++.+.--+-|-|.-|||||++|+ +|.+++ .|+.=++. ++-+..-+....++-+-++ -..+..-...++..-
T Consensus 43 VSFeV~kGE~vGIIG~NGAGKSTLLK-iIaGI~---~PTsG~V~-V~Gk~sLL~lgaGf~~eLT-GrENI~L~g~~lGls 116 (549)
T PRK13545 43 ISFEVPEGEIVGIVGLNGSGKSTLSN-LIAGVT---MPNKGTVD-IKGSAALIAISSGLNGQLT-GIENIELKGLMMGIT 116 (549)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHH-HHHCCC---CCCCEEEE-ECCEEEEEEECCCCCCCCC-HHHHHHHHHHHHCCC
T ss_conf 25786489899998899998999999-996898---89860899-9468987740557697762-999999889984989
Q ss_pred HHHHHHHHHHH---HHCC---CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 98667699999---9807---78679999988642026776665432338679998445687675310358999999999
Q gi|254780606|r 485 VREMEERYRKM---SHLS---VRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQ 558 (744)
Q Consensus 485 ~~em~~r~~~~---~~~~---~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~ 558 (744)
..++++++... ++.| -+-+..|-.... .+..+...... -|-| ++|||. |......+.+.++.|+..
T Consensus 117 k~eI~~~~deIiEFAELGdFid~PVKtYSSGMk-aRLgFAIA~~~----dPDI-LIIDEa--LSVGD~~F~~Kc~~rm~e 188 (549)
T PRK13545 117 KEKIKEIIPEIIDFADIGKFMYQPVKTYSSGMK-SRLGFAISVHI----NPDI-LVIDEA--LSVGDQTFTKKCLDKMNE 188 (549)
T ss_pred HHHHHHHHHHHHHHHCHHHHHHCHHHHHCHHHH-HHHHHHHHHHC----CCCE-EEEECC--CCCCCHHHHHHHHHHHHH
T ss_conf 999999899999985678887382634088689-99999999824----9999-999462--005789999999999999
Q ss_pred HHHCCEEEEEEEECC
Q ss_conf 642013589998516
Q gi|254780606|r 559 MARAAGIHLIMATQR 573 (744)
Q Consensus 559 ~~ra~GihlilatQr 573 (744)
+ +.-|--+++.+.-
T Consensus 189 f-~e~gkTIvfVSHs 202 (549)
T PRK13545 189 F-KEQGKTIFFISHS 202 (549)
T ss_pred H-HHCCCEEEEEECC
T ss_conf 9-9789889999588
No 380
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=91.94 E-value=0.12 Score=30.39 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=38.0
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCC-------CEECCCCCCCCEEEE
Q ss_conf 21120114846997078753447999999999985680110799972342-------100012577520000
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKM-------LELSVYDGIPHLLTP 469 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~-------~~~~~~~~~ph~~~~ 469 (744)
+-++++..-|+-|-|.||||||++++-+.-. |.....++.+--++.+. -.+++...-+|++..
T Consensus 357 ~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~--~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~ 426 (573)
T COG4987 357 FNLTLAQGEKVAILGRSGSGKSTLLQLLAGA--WDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG 426 (573)
T ss_pred CCEEECCCCEEEEECCCCCCHHHHHHHHHHC--CCCCCCEEEECCCCHHHCCHHHHHHHHHHHCCCHHHHHH
T ss_conf 6513258876888779998789999999723--587887365788673318836689987541232177777
No 381
>KOG0054 consensus
Probab=91.94 E-value=0.15 Score=29.72 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=24.1
Q ss_pred CCHHHCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 120114846997078753447999999999
Q gi|254780606|r 407 ADLANMPHILVAGTTGSGKSVAINTMIMSL 436 (744)
Q Consensus 407 ~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl 436 (744)
++..+.-.+.|.|.+|||||.+|.+|+-.|
T Consensus 542 ~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm 571 (1381)
T KOG0054 542 FEIKKGQLVAVVGPVGSGKSSLLSAILGEM 571 (1381)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 896289889998999888899999996587
No 382
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=91.91 E-value=0.95 Score=24.12 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=20.6
Q ss_pred EEECCHHHCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 321120114846997078753447999999999
Q gi|254780606|r 404 SVIADLANMPHILVAGTTGSGKSVAINTMIMSL 436 (744)
Q Consensus 404 ~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl 436 (744)
++-+++.+.-=+-|.|..|||||++++. |++|
T Consensus 271 ~vsl~v~~GEivgivG~nGsGKSTL~k~-L~Gl 302 (501)
T PRK11288 271 PISFAVRRGEIVGFFGLVGAGRSELMKL-LYGA 302 (501)
T ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHH-HCCC
T ss_conf 6347870883999756888648799998-4387
No 383
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=91.90 E-value=0.13 Score=30.08 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=19.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 484699707875344799999999
Q gi|254780606|r 412 MPHILVAGTTGSGKSVAINTMIMS 435 (744)
Q Consensus 412 ~PH~lvaG~TgsGKS~~l~~~i~s 435 (744)
.+-++++|.||+|||.+|+.+-.+
T Consensus 127 ~~~~vl~G~TG~GKT~iL~~L~~~ 150 (311)
T TIGR03167 127 FPLIVLGGMTGSGKTELLHALANA 150 (311)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 876998788887789999999976
No 384
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=91.89 E-value=0.14 Score=29.76 Aligned_cols=48 Identities=23% Similarity=0.400 Sum_probs=30.3
Q ss_pred EEECCCCCEEECC----HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEE
Q ss_conf 4205788732112----011484699707875344799999999998568011079
Q gi|254780606|r 396 LGKTISGESVIAD----LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRM 447 (744)
Q Consensus 396 ~g~~~~g~~~~~d----l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~ 447 (744)
....-..++++-| +.+.-.+.|-|.+|||||++++. |++++ .|+.=++
T Consensus 8 f~Y~~~~~~~L~~i~l~i~~Ge~~aivG~sGsGKSTLl~~-l~G~~---~p~~G~i 59 (178)
T cd03247 8 FSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQL-LTGDL---KPQQGEI 59 (178)
T ss_pred EECCCCCCCCEECEEEEECCCCEEEEECCCCCHHHHHHHH-HHHCC---CCCCCEE
T ss_conf 9879999863325589986999999999998759999999-98617---6678869
No 385
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.89 E-value=0.15 Score=29.70 Aligned_cols=36 Identities=28% Similarity=0.518 Sum_probs=25.7
Q ss_pred CCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 887321120----1148469970787534479999999999
Q gi|254780606|r 401 SGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 401 ~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
.+++++-|+ .+.-.+-|.|.+|||||++++. |++|+
T Consensus 14 ~~~~vL~~inl~i~~Ge~vaivG~sGsGKSTLl~l-l~gl~ 53 (229)
T cd03254 14 EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINL-LMRFY 53 (229)
T ss_pred CCCEEEECEEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC
T ss_conf 89908746299987999999999999809999999-96686
No 386
>KOG0064 consensus
Probab=91.80 E-value=0.98 Score=24.04 Aligned_cols=150 Identities=22% Similarity=0.305 Sum_probs=71.9
Q ss_pred CCCCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHH-----CCHHHEEEEEECCCCCEECCCCCCCCEEEE
Q ss_conf 57887321120----114846997078753447999999999985-----680110799972342100012577520000
Q gi|254780606|r 399 TISGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYR-----LRPDECRMIMVDPKMLELSVYDGIPHLLTP 469 (744)
Q Consensus 399 ~~~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~-----~~p~~~~~~liD~k~~~~~~~~~~ph~~~~ 469 (744)
+-.|+.++-.| ...-|+||-|--|-|||.+-+ |+.+|--- +.|...+++.|--+ +|-..--+...
T Consensus 491 tP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfR-ILggLWPvy~g~L~~P~~~~mFYIPQR-----PYms~gtlRDQ 564 (728)
T KOG0064 491 TPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFR-ILGGLWPVYNGLLSIPRPNNIFYIPQR-----PYMSGGTLRDQ 564 (728)
T ss_pred CCCCCEEECCEEEEECCCCEEEEECCCCCCHHHHHH-HHHCCCCCCCCEEECCCCCCEEECCCC-----CCCCCCCCCCE
T ss_conf 567546522215874588269987899765889999-986447232775634897636853688-----75676753121
Q ss_pred EEE-C----HH-------HHHHHHHHHHHHHHHHHHHH-HHCCCCCHHHHH--------HHHHHHHCCCCCCCCCCCCCC
Q ss_conf 444-4----17-------87689999998667699999-980778679999--------988642026776665432338
Q gi|254780606|r 470 VVT-N----PK-------KAVMALKWAVREMEERYRKM-SHLSVRNIKSYN--------ERISTMYGEKPQGCGDDMRPM 528 (744)
Q Consensus 470 v~~-~----~~-------~~~~~l~~~~~em~~r~~~~-~~~~~~~i~~~n--------~~~~~~~~~~~~~~~~~~~~~ 528 (744)
||. | .+ +....|+.+. .+.+. .+.|+.-+.++. +|+.-.+..+++
T Consensus 565 IIYPdS~e~m~~kg~td~dL~~IL~~V~-----Lehi~qR~~g~dav~dWkDvLSgGeKQRm~mARmfYHr--------- 630 (728)
T KOG0064 565 IIYPDSSEQMKRKGYTDQDLEAILDIVH-----LEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHR--------- 630 (728)
T ss_pred EECCCCHHHHHHCCCCHHHHHHHHHHHH-----HHHHHHHCCCHHHHHCHHHHCCHHHHHHHHHHHHHHCC---------
T ss_conf 3358869999866996788999999973-----99999741671354057877050388888899997428---------
Q ss_pred CEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 67999844568767531035899999999964201358999851654
Q gi|254780606|r 529 PYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 529 p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
| ...+.||.- ....-++|..| =|.+.-+||.||--|+||+
T Consensus 631 P-kyalLDEcT---SAVSiDvE~~i---fq~aK~~gisllSIthRps 670 (728)
T KOG0064 631 P-KYALLDECT---SAVSIDVEGKI---FQAAKDAGISLLSITHRPS 670 (728)
T ss_pred C-CHHHHHHHH---CCCCCCHHHHH---HHHHHHCCCEEEEEECCCC
T ss_conf 5-147777673---02661247899---9998745924998516851
No 387
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=91.77 E-value=0.088 Score=31.21 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=31.6
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHH--EEEEEECCCCCEECCC
Q ss_conf 2112011484699707875344799999999998568011--0799972342100012
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDE--CRMIMVDPKMLELSVY 460 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~--~~~~liD~k~~~~~~~ 460 (744)
+-+.+.+.-++.|-|.||||||++++- |+. -+.|++ +.+--+|-+...+..+
T Consensus 342 isl~i~~Ge~vaiVG~SGsGKSTL~~L-L~r---~y~p~~G~I~idG~di~~~~~~~l 395 (547)
T PRK10522 342 INLTIKRGELLFLIGGNGSGKSTLAML-LTG---LYQPQSGEILLDGKPVTAEQPEDY 395 (547)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHH-HHC---CCCCCCCEEEECCEECCCCCHHHH
T ss_conf 047985998899989999977999999-828---966999869899999996899999
No 388
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=91.74 E-value=0.77 Score=24.74 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=28.4
Q ss_pred HHCCCE-EEEECCCCCHHHHHHHHHHHHHHHCCHHH
Q ss_conf 114846-99707875344799999999998568011
Q gi|254780606|r 410 ANMPHI-LVAGTTGSGKSVAINTMIMSLLYRLRPDE 444 (744)
Q Consensus 410 ~~~PH~-lvaG~TgsGKS~~l~~~i~sl~~~~~p~~ 444 (744)
.++||. |+.|..|.||+.+-..+...|+....|+.
T Consensus 16 ~Rl~HAyLf~Gp~G~GK~~~A~~~A~~LLc~~~p~~ 51 (290)
T PRK05917 16 QKVPSAILLHGQDLSNLSQYAYELASLILLESSPEA 51 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCH
T ss_conf 996606876899986599999999999857899616
No 389
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=91.74 E-value=0.2 Score=28.75 Aligned_cols=47 Identities=17% Similarity=0.190 Sum_probs=30.3
Q ss_pred ECCCCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEE
Q ss_conf 057887321120----1148469970787534479999999999856801107
Q gi|254780606|r 398 KTISGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECR 446 (744)
Q Consensus 398 ~~~~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~ 446 (744)
+...|+.++-|+ .+.=.+-|.|..|||||++++.| +++ ..+.|+.=.
T Consensus 9 ~~~~~~~vL~~isl~i~~Gei~~iiG~nGaGKSTLl~~i-~G~-~~~~~~~G~ 59 (248)
T PRK09580 9 VSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATL-AGR-EDYEVTGGT 59 (248)
T ss_pred EEECCEEEEECCEEEECCCCEEEEECCCCCCHHHHHHHH-HCC-CCCCCCCCE
T ss_conf 998999999651889849979999999999999999998-377-556875235
No 390
>pfam03354 Terminase_1 Phage Terminase. The majority of the members of this family are bacteriophage proteins, several of which are thought to be terminase large subunit proteins. There are also a number of bacterial proteins of unknown function.
Probab=91.73 E-value=0.99 Score=23.99 Aligned_cols=140 Identities=17% Similarity=0.123 Sum_probs=64.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69970787534479999999999856801107999723421000125775200004444178768999999866769999
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEERYRK 494 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r~~~ 494 (744)
.+|-=+-|.|||.+.-.|.+-+++. |.. .-+. +..+.++.+.|..+.+.+....+ +-..
T Consensus 25 ~~i~v~RkNGKS~l~a~i~ly~~~~-----------~ge--------~~~e-i~~~A~~~~QA~~~f~~~~~mi~-~~p~ 83 (473)
T pfam03354 25 AYVSVGRKNGKSYLMAIRVLYELLL-----------GGK--------SNQE-ILVAATTFKQAEKLFKYVKNQVK-LSPF 83 (473)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHH-----------CCC--------CCCE-EEEEECCHHHHHHHHHHHHHHHH-CCHH
T ss_conf 9999826860269999999999970-----------998--------3874-99997989999999999999997-3987
Q ss_pred HHHC-CCCCHHHHHHHHHHHH--CCCC--CCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEE
Q ss_conf 9980-7786799999886420--2677--666543233867999844568767531035899999999964201358999
Q gi|254780606|r 495 MSHL-SVRNIKSYNERISTMY--GEKP--QGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIM 569 (744)
Q Consensus 495 ~~~~-~~~~i~~~n~~~~~~~--~~~~--~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihlil 569 (744)
+++. +......+...+.... .... -.....+..+-..++|+||++..- ..++-+.| +-++.+|.-.+.+++
T Consensus 84 l~~~~~~~~~~~~~~~i~~~~t~s~~~~ls~~~~~~dG~~~~~~i~DE~h~~~---~~~~~~~l-~sg~~~r~~~l~~~I 159 (473)
T pfam03354 84 LSIANENKLLKSQKDGIEMKINNNVFKALSNNGDQYDGGNPSLAIFDEMHEFK---DRELVSTI-VTGMRKQDNPQTIQI 159 (473)
T ss_pred HHHHHHCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCC---CHHHHHHH-HHHHHCCCCCEEEEE
T ss_conf 77553011013100158980789689998578987669987289987223048---82789999-876316888719997
Q ss_pred EECCCCCCCC
Q ss_conf 8516544441
Q gi|254780606|r 570 ATQRPSVDVI 579 (744)
Q Consensus 570 atQrp~~~vi 579 (744)
.|+-+..+.+
T Consensus 160 TTag~~~~~~ 169 (473)
T pfam03354 160 TTAGPNRGGP 169 (473)
T ss_pred CCCCCCCCCH
T ss_conf 6778898871
No 391
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.72 E-value=0.15 Score=29.56 Aligned_cols=208 Identities=14% Similarity=0.162 Sum_probs=91.8
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCE------E---------CCCCCCCCEEEE
Q ss_conf 2112011484699707875344799999999998568011079997234210------0---------012577520000
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLE------L---------SVYDGIPHLLTP 469 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~------~---------~~~~~~ph~~~~ 469 (744)
|-+++.+.=-+-|.|.+|||||+++++ |.+|+ .|+.=++.+-|..... . ..+..+-..++-
T Consensus 45 Is~~i~~Ge~vaIIG~nGsGKSTL~~~-l~Gll---~p~~G~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~vg~ 120 (320)
T PRK13631 45 ISYTFEKNKIYFIIGNSGSGKSTLVTH-FNGLI---KSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSM 120 (320)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHH-HHCCC---CCCCCEEEECCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 455885998999994999849999999-97588---89983599865871454456310025026677789997534899
Q ss_pred EEECH-------------HHHHHHHHHHHHHHHHHHH-HHHHCCCCC-H-HH--------HHHHHHHHHCCCCCCCCCCC
Q ss_conf 44441-------------7876899999986676999-999807786-7-99--------99988642026776665432
Q gi|254780606|r 470 VVTNP-------------KKAVMALKWAVREMEERYR-KMSHLSVRN-I-KS--------YNERISTMYGEKPQGCGDDM 525 (744)
Q Consensus 470 v~~~~-------------~~~~~~l~~~~~em~~r~~-~~~~~~~~~-i-~~--------~n~~~~~~~~~~~~~~~~~~ 525 (744)
|.-++ ......+.+-..|+.+|.. .+...|... + +. =.+|++-... +
T Consensus 121 VfQ~P~~~lf~~tV~~di~fg~~~~g~~~~e~~~r~~~~L~~vgl~~~~~~r~p~~LSGGqkQRVaIA~a---------L 191 (320)
T PRK13631 121 VFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGI---------L 191 (320)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHH---------H
T ss_conf 9607430316528999999889985999999999999999887997467437822099999999999999---------7
Q ss_pred CCCCEEEEEHHHHHHHHH-HCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHH
Q ss_conf 338679998445687675-3103589999999996420135899985165444414678850563057203681110032
Q gi|254780606|r 526 RPMPYIVIIVDEMADLMM-VAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTI 604 (744)
Q Consensus 526 ~~~p~ivvviDE~a~l~~-~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~i 604 (744)
.--|. +++.||=..-+. ....++-..|.+ -+.-|+-+|+.|...+ .+ +.+.-||.+-- +.+ |
T Consensus 192 a~~P~-iLilDEPTagLDp~~~~~i~~li~~----l~~~g~TiilvTHdm~--~v-----~~~aDrviVm~----~Gk-I 254 (320)
T PRK13631 192 AIQPE-ILIFDEPTAGLDPKGEHEMMQLILD----AKANNKTVFVITHTME--HV-----LEVADEVIVMD----KGK-I 254 (320)
T ss_pred HCCCC-EEEECCCCCCCCHHHHHHHHHHHHH----HHHCCCEEEEECCCHH--HH-----HHHCCEEEEEE----CCE-E
T ss_conf 23999-9997587555998999999999999----9962999999947899--99-----99799999998----988-9
Q ss_pred CCCCCHHHHCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCC
Q ss_conf 6763168856898468646898438999343898899999999984088
Q gi|254780606|r 605 LGEHGAEQLLGRGDMLYMSGGGRIQRVHGPLVSDIEIEKVVQHLKKQGC 653 (744)
Q Consensus 605 l~~~gae~l~g~gd~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 653 (744)
+.++-.+.++..-++|...+=. -..+-++...+++.|-
T Consensus 255 v~~Gtp~eiF~~~~~l~~~~l~-----------~P~~~~l~~~L~~~g~ 292 (320)
T PRK13631 255 LKTGTPYEIFTDQHIINSTSIQ-----------VPRVIQVINDLIKKDP 292 (320)
T ss_pred EEECCHHHHHCCHHHHHHCCCC-----------CCCHHHHHHHHHHCCC
T ss_conf 9975889986599999977999-----------9929999999997399
No 392
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=91.67 E-value=0.17 Score=29.22 Aligned_cols=22 Identities=36% Similarity=0.601 Sum_probs=18.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHH
Q ss_conf 6997078753447999999999
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSL 436 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl 436 (744)
+.|+|.+|||||.+-+.|.-.|
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l 23 (196)
T pfam00485 2 IGVAGSSGAGKTTVARTFVSIF 23 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998998571999999999996
No 393
>TIGR01166 cbiO cobalt ABC transporter, ATP-binding protein; InterPro: IPR005876 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. This superfamily includes two groups, one which catalyses the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drives both the process of uptake and efflux.; GO: 0006824 cobalt ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=91.65 E-value=0.36 Score=27.04 Aligned_cols=156 Identities=19% Similarity=0.241 Sum_probs=83.4
Q ss_pred CCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECC-------------CCCC-CCEEEEEE-
Q ss_conf 12011484699707875344799999999998568011079997234210001-------------2577-52000044-
Q gi|254780606|r 407 ADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSV-------------YDGI-PHLLTPVV- 471 (744)
Q Consensus 407 ~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~-------------~~~~-ph~~~~v~- 471 (744)
++..+.+-+-+-|.=|||||+++.+ +-++| .|.. =-+++|-+-+.++. |++- -++|.+-|
T Consensus 13 ~~~~~G~~~aLlG~NGaGKsTLl~~-LnG~L---rP~~-G~v~~dG~~l~YsrkgL~~~R~~V~~VfQdPDDQlF~a~V~ 87 (190)
T TIGR01166 13 FAVERGEVLALLGANGAGKSTLLLH-LNGLL---RPQS-GKVLLDGEPLDYSRKGLLEVRQRVGLVFQDPDDQLFAADVD 87 (190)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHH-HCCCC---CCCC-CEEEECCEECCCCCHHHHHHCCEEEEEEECHHHHCCCCCCC
T ss_conf 0220571689872899857899887-43677---7975-55876785403572446752503003762634420267622
Q ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCC--CCCCEEEEEHHHHHHHHHHCCHHH
Q ss_conf 441787689999998667699999980778679999988642026776665432--338679998445687675310358
Q gi|254780606|r 472 TNPKKAVMALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDM--RPMPYIVIIVDEMADLMMVAGKEI 549 (744)
Q Consensus 472 ~~~~~~~~~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~--~~~p~ivvviDE~a~l~~~~~~~~ 549 (744)
.|....-..|.---.|.++| .......=.+.+|.+|....-+...+....-- =.|--=|+|.||=..=+. .+-
T Consensus 88 ~DVaFGPlNLGL~e~Ev~~R--V~eAL~~vg~~~~~~rp~h~LS~GekkRvAIAGAvAM~Pd~l~LDEPTAGLD---p~G 162 (190)
T TIGR01166 88 QDVAFGPLNLGLSEAEVERR--VREALTAVGISGLEERPTHLLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLD---PAG 162 (190)
T ss_pred CCCCCCCCCCCCCHHHHHHH--HHHHHHHCCHHHHHHCCHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCC---HHH
T ss_conf 10033545673371576787--8999986063224412241155861357777758861663466427888978---747
Q ss_pred HHHHHHHHHHHHCCEEEEEEEEC
Q ss_conf 99999999964201358999851
Q gi|254780606|r 550 EGAIQRLAQMARAAGIHLIMATQ 572 (744)
Q Consensus 550 e~~~~~la~~~ra~GihlilatQ 572 (744)
...|.+|-.+=|+.|.|+|++|-
T Consensus 163 ~~q~~~~l~~L~~~G~tvv~STH 185 (190)
T TIGR01166 163 AEQLLAILRRLRAEGTTVVISTH 185 (190)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 99999998878723998999725
No 394
>PRK07773 replicative DNA helicase; Validated
Probab=91.62 E-value=1 Score=23.91 Aligned_cols=29 Identities=31% Similarity=0.194 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHC
Q ss_conf 48469970787534479999999999856
Q gi|254780606|r 412 MPHILVAGTTGSGKSVAINTMIMSLLYRL 440 (744)
Q Consensus 412 ~PH~lvaG~TgsGKS~~l~~~i~sl~~~~ 440 (744)
.--++|||.+|+|||.|..+|....+..+
T Consensus 203 ~~l~i~a~rp~~GKt~~~~~~a~~~a~~~ 231 (868)
T PRK07773 203 GQMIIVAARPGVGKSTLGLDFARSCSIRH 231 (868)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 76799982897777789999999999865
No 395
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=91.62 E-value=0.15 Score=29.71 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=17.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHH
Q ss_conf 6997078753447999999999
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSL 436 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl 436 (744)
+-|+|.||||||.+-+.|...|
T Consensus 2 IgIaG~S~SGKTTla~~L~~~l 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 8996888875999999999987
No 396
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=91.62 E-value=0.21 Score=28.56 Aligned_cols=42 Identities=26% Similarity=0.371 Sum_probs=30.4
Q ss_pred EEECCCCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 42057887321120----11484699707875344799999999998
Q gi|254780606|r 396 LGKTISGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLY 438 (744)
Q Consensus 396 ~g~~~~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~ 438 (744)
|.+..+|++++-|+ .+.=-+.|.|..|||||++++. |++|+.
T Consensus 6 ls~~~g~~~il~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~-i~Gl~~ 51 (201)
T cd03231 6 LTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRI-LAGLSP 51 (201)
T ss_pred EEEEECCEEEEECCEEEECCCCEEEEECCCCCCHHHHHHH-HHCCCC
T ss_conf 9999999999953078887995999999999999999999-966778
No 397
>PRK01156 chromosome segregation protein; Provisional
Probab=91.58 E-value=0.17 Score=29.30 Aligned_cols=15 Identities=33% Similarity=0.771 Sum_probs=4.8
Q ss_pred EEECCCCCHHHHHHH
Q ss_conf 970787534479999
Q gi|254780606|r 417 VAGTTGSGKSVAINT 431 (744)
Q Consensus 417 vaG~TgsGKS~~l~~ 431 (744)
|.|.||||||..+-+
T Consensus 28 I~G~NGaGKStIldA 42 (895)
T PRK01156 28 ITGKNGAGKSSIVDA 42 (895)
T ss_pred EECCCCCCHHHHHHH
T ss_conf 889999987899999
No 398
>pfam10923 DUF2791 Protein of unknown function (DUF2791). This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=91.56 E-value=0.49 Score=26.10 Aligned_cols=97 Identities=16% Similarity=0.271 Sum_probs=59.4
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHH-HHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHC-C
Q ss_conf 4444178768999999866769999998077867-9999988-64202677666543233867999844568767531-0
Q gi|254780606|r 470 VVTNPKKAVMALKWAVREMEERYRKMSHLSVRNI-KSYNERI-STMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVA-G 546 (744)
Q Consensus 470 v~~~~~~~~~~l~~~~~em~~r~~~~~~~~~~~i-~~~n~~~-~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~-~ 546 (744)
.-.|...+..+|+|+..|-.-.....+.+|+|.| ++.|..- -..-..+....| ..=++|++||+--|.... .
T Consensus 33 ~~gd~~~~~~al~WLrGe~~~kt~ar~~lGVr~iIdd~~~~d~Lk~l~~fv~~aG-----y~GLli~lDE~~nL~ki~~~ 107 (267)
T pfam10923 33 AEGDEELKAAALRWLRGEPNTKTEAKRALGVRGIIDDDSAYDFLKLLATFVRDAG-----YAGLLVVLDEAVNLYKLRNS 107 (267)
T ss_pred HCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHCC-----CCCEEEEHHHHHHHHHCCCH
T ss_conf 6476999999999984899606899998599856667109999999999999859-----88068741657898714324
Q ss_pred HHHHHHHHHH------HHHHHCCEEEEEEEE
Q ss_conf 3589999999------996420135899985
Q gi|254780606|r 547 KEIEGAIQRL------AQMARAAGIHLIMAT 571 (744)
Q Consensus 547 ~~~e~~~~~l------a~~~ra~Gihlilat 571 (744)
+--+.....| .-.||+-|+.++++-
T Consensus 108 ~~R~knye~il~i~nd~~qG~~~~L~~~~~G 138 (267)
T pfam10923 108 QARDKNYEALLQILNDILQGRAPGLGFVIGG 138 (267)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 7788789999999989866988870588637
No 399
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=91.56 E-value=1 Score=23.87 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=21.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 469970787534479999999999
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
|++|-|.-|+|||++++-++-.|-
T Consensus 1 ki~ITG~pGvGKTTli~kv~~~l~ 24 (168)
T pfam03266 1 RIFITGPPGVGKTTLVKKVIELLK 24 (168)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 989978999889999999999998
No 400
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=91.54 E-value=0.32 Score=27.32 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 4846997078753447999999999985
Q gi|254780606|r 412 MPHILVAGTTGSGKSVAINTMIMSLLYR 439 (744)
Q Consensus 412 ~PH~lvaG~TgsGKS~~l~~~i~sl~~~ 439 (744)
-+-+++.|.+|+|||-+|+++--..+..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~ 140 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALAN 140 (408)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 8957998799997899999999999862
No 401
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=91.53 E-value=0.17 Score=29.22 Aligned_cols=44 Identities=25% Similarity=0.410 Sum_probs=30.0
Q ss_pred CCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEE
Q ss_conf 887321120----114846997078753447999999999985680110799
Q gi|254780606|r 401 SGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMI 448 (744)
Q Consensus 401 ~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~ 448 (744)
+|++++-|+ .+.-.+.|-|.+|||||++++. |++|+ .|+.=++.
T Consensus 12 ~~~~il~~isl~i~~Ge~v~i~G~sGsGKSTLl~~-l~Gl~---~~~~G~i~ 59 (166)
T cd03223 12 DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRA-LAGLW---PWGSGRIG 59 (166)
T ss_pred CCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHH-HCCCC---CCCCCEEE
T ss_conf 99988944588988999999995899988999999-86987---69986799
No 402
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=91.50 E-value=0.33 Score=27.25 Aligned_cols=151 Identities=18% Similarity=0.258 Sum_probs=71.9
Q ss_pred CCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHH--CCHHHEEEEEE--CCCCCE---------ECCCCCCCCEEEEEEEC
Q ss_conf 120114846997078753447999999999985--68011079997--234210---------00125775200004444
Q gi|254780606|r 407 ADLANMPHILVAGTTGSGKSVAINTMIMSLLYR--LRPDECRMIMV--DPKMLE---------LSVYDGIPHLLTPVVTN 473 (744)
Q Consensus 407 ~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~--~~p~~~~~~li--D~k~~~---------~~~~~~~ph~~~~v~~~ 473 (744)
+++.+.=-+-|-|..|||||++|+ +|.+|+.. ..|+.=++++- |..... .+....-|+++. .|=
T Consensus 21 l~i~~Ge~~~iiG~SGsGKSTll~-~i~gL~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~R~~ig~VfQ~~~lf~--~TV 97 (227)
T cd03260 21 LDIPKGEITALIGPSGCGKSTLLR-LLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFP--GSI 97 (227)
T ss_pred EEECCCCEEEEECCCCCCHHHHHH-HHHHHHHCCCCCCCCEEEEECCEECCCCCCCHHHHHHCCEEECCCCCCCC--CCH
T ss_conf 788799899999999981999999-99744502689981469999999998899587889628268764776677--809
Q ss_pred HHHHHHHHHH----HHHHHHHH-HHHHHHCCCCC----------HH-HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHH
Q ss_conf 1787689999----99866769-99999807786----------79-999988642026776665432338679998445
Q gi|254780606|r 474 PKKAVMALKW----AVREMEER-YRKMSHLSVRN----------IK-SYNERISTMYGEKPQGCGDDMRPMPYIVIIVDE 537 (744)
Q Consensus 474 ~~~~~~~l~~----~~~em~~r-~~~~~~~~~~~----------i~-~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE 537 (744)
.+.....|+. -.++++.| .+.+...|..+ +. +-.+|++-.+.- -.-|.| ++.||
T Consensus 98 ~eNi~~~l~~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~p~~LSGGq~QRvaIArAL---------~~~P~i-LllDE 167 (227)
T cd03260 98 YDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARAL---------ANEPEV-LLLDE 167 (227)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHH---------HCCCCE-EEECC
T ss_conf 99999999983899999999999999987799758844568022899999999999998---------359999-99689
Q ss_pred H-HHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 6-8767531035899999999964201358999851654
Q gi|254780606|r 538 M-ADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 538 ~-a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
= +.|-.....++...|.+|.+. +-+|+.|-+..
T Consensus 168 PTs~LD~~~~~~i~~li~~l~~~-----~Tii~vTHdl~ 201 (227)
T cd03260 168 PTSALDPISTAKIEELIAELKKE-----YTIVIVTHNMQ 201 (227)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHC-----CEEEEEECCHH
T ss_conf 87657989999999999999668-----88999936999
No 403
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.45 E-value=0.54 Score=25.80 Aligned_cols=69 Identities=20% Similarity=0.203 Sum_probs=39.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCE----ECCCCCCCCEEEEEEECHHHHHHHHHHHH
Q ss_conf 699707875344799999999998568011079997234210----00125775200004444178768999999
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLE----LSVYDGIPHLLTPVVTNPKKAVMALKWAV 485 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~----~~~~~~~ph~~~~v~~~~~~~~~~l~~~~ 485 (744)
+++.|-||+|||..+-=|..-+. .....+-|+=.|..+.. |..|..+-.+-...+.+.......+++..
T Consensus 3 i~lvGptGvGKTTTiaKLA~~~~--~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~ 75 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLK--KKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAI 75 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH--HCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
T ss_conf 99989999988999999999999--76992899974887577999999999974985992277558799999999
No 404
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=91.44 E-value=0.96 Score=24.10 Aligned_cols=112 Identities=16% Similarity=0.176 Sum_probs=73.1
Q ss_pred EEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCC-CCCH-----HHHHHCCCCEEEEECCCHHHCCH
Q ss_conf 79998445687675310358999999999642013589998516544-4414-----67885056305720368111003
Q gi|254780606|r 530 YIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSV-DVIT-----GTIKANFPIRISFQVTSKIDSRT 603 (744)
Q Consensus 530 ~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~-~vi~-----~~ik~n~~~ri~~~v~~~~dsr~ 603 (744)
.+++..|||..|=.. +.+|..+.- -+.+||.+++-.|-.+- +-+= ..|-+|...||.|.+.+..+.+.
T Consensus 390 ~vLlLLDEF~aLGkL--~iie~Ala~----mAGYGiRl~lI~Qsl~QL~~~YGe~~a~tilsN~~vrI~fapnD~eTAk~ 463 (670)
T PRK13850 390 EVLFLLDEFKHLGKL--EAIETAITT----IAGYKGRFMFIIQSLSALTGTYDEAGKQNFLSNTGVQVFMATADDETPTY 463 (670)
T ss_pred EEEEEECCCCCCCCH--HHHHHHHHH----HCCCCCEEEEEEECHHHHHHHHCHHHHHHHHHCCCEEEEECCCCHHHHHH
T ss_conf 079986064105874--899999998----62568789999847999998858415678872572699965797766999
Q ss_pred HCCCCCH----------------------------------HHHCCCCCEEEECCCCCEEEEEEC-CCCHHHHHHHHHH
Q ss_conf 2676316----------------------------------885689846864689843899934-3898899999999
Q gi|254780606|r 604 ILGEHGA----------------------------------EQLLGRGDMLYMSGGGRIQRVHGP-LVSDIEIEKVVQH 647 (744)
Q Consensus 604 il~~~ga----------------------------------e~l~g~gd~l~~~~~~~~~r~~~~-~~~~~~~~~~~~~ 647 (744)
|=+.-|- -..|+.-|.|.+..|..|||..-. |..|.+.+++-+-
T Consensus 464 iS~~LG~~T~~~~s~S~~~~r~~~~s~s~seq~RpLLtP~Evr~Lp~d~eIvlv~G~~PI~akKirYY~D~~fk~i~~~ 542 (670)
T PRK13850 464 ISKAIGDYTFKARSTSYSQARMFDHNIQISDQGAPLLRPEQVRLLDDDYEIVLIKGQPPLKLRKVRYYSDRELKRIFEA 542 (670)
T ss_pred HHHHHCHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCEEECEEEECCCHHHHHHHHH
T ss_conf 9998482134533110367877788744002667689978995399876699806999703333154158888888874
No 405
>PRK08727 hypothetical protein; Validated
Probab=91.40 E-value=0.59 Score=25.53 Aligned_cols=42 Identities=26% Similarity=0.394 Sum_probs=27.4
Q ss_pred EEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 99844568767531035899999999964201358999851654
Q gi|254780606|r 532 VIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 532 vvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
+|+||.+-.+. ..++.|..+=.|--..|..|..|++++..+-
T Consensus 96 ll~iDDid~i~--g~~~~e~aLFhL~N~~~~~~~~ll~ts~~~P 137 (233)
T PRK08727 96 LVALDGVDSIA--GQREDEVALFDFHNRARAAGITLLYTARQMP 137 (233)
T ss_pred EEEEECCHHCC--CCHHHHHHHHHHHHHHHHCCCEEEEECCCCH
T ss_conf 78985501126--9827999999999999861983899779895
No 406
>pfam09140 MipZ ATPase MipZ. MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.
Probab=91.37 E-value=0.6 Score=25.48 Aligned_cols=86 Identities=23% Similarity=0.291 Sum_probs=45.5
Q ss_pred EEEEHHHHHHHHHHCCHHHHH----------HHHHHHHHHH----CCEEEEEEEECCCCC-----CCCHHHHHHCCCCEE
Q ss_conf 999844568767531035899----------9999999642----013589998516544-----441467885056305
Q gi|254780606|r 531 IVIIVDEMADLMMVAGKEIEG----------AIQRLAQMAR----AAGIHLIMATQRPSV-----DVITGTIKANFPIRI 591 (744)
Q Consensus 531 ivvviDE~a~l~~~~~~~~e~----------~~~~la~~~r----a~GihlilatQrp~~-----~vi~~~ik~n~~~ri 591 (744)
|+=+-|||-||-..+.-+.+. .+..-+++.| ..-|.-|+-..|-+. +--.+....++.-||
T Consensus 125 IiPlq~sf~dld~L~~vd~~~~~i~~~s~y~e~vw~~r~~ra~~~~~~idwivlrnRl~~~~~rnk~~~~~~l~~Ls~ri 204 (261)
T pfam09140 125 VTPLNDSFVDFDLLGQVDPETFKVTRPSFYAEMVWEARKKRAQADRAPIDWIVLRNRLSTLEARNKRRVEDALNELSKRV 204 (261)
T ss_pred EECCCHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 63244015514335213703432136217899999999987436898864799805621888788899999999997640
Q ss_pred EEECCCHHHCCHHCCCCCHHHHCCCCCEEE
Q ss_conf 720368111003267631688568984686
Q gi|254780606|r 592 SFQVTSKIDSRTILGEHGAEQLLGRGDMLY 621 (744)
Q Consensus 592 ~~~v~~~~dsr~il~~~gae~l~g~gd~l~ 621 (744)
+||+.....-|+|.-+ |.-+|=-|+
T Consensus 205 gfr~~~g~~eRviyRe-----lfp~gltl~ 229 (261)
T pfam09140 205 GFRVAPGFSERVIYRE-----LFPRGLTLL 229 (261)
T ss_pred CCCCCCCCCHHHHHHH-----HCCCCCCHH
T ss_conf 7522577431357877-----624677141
No 407
>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.
Probab=91.34 E-value=0.23 Score=28.34 Aligned_cols=122 Identities=21% Similarity=0.290 Sum_probs=61.5
Q ss_pred CCCCEEEEECCCCCCCEEEHHHHHCCHHHCC--CCCCEEEEEEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 8983454426888887076587512812114--67836898420578873211201148469970787534479999999
Q gi|254780606|r 357 PKRNAIGIELPNETRETVYLRQIIESRSFSH--SKANLALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIM 434 (744)
Q Consensus 357 pg~~~~~~~~p~~~~~~v~~~~~~~~~~~~~--~~~~l~~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~ 434 (744)
-|+ --|+||..+|..=.-|-|.=..+-.+ .+-.+.|+||+ =..|-|-.|||||.+||-++.
T Consensus 625 ~G~--~~I~vP~~R~~~~g~r~l~~~gA~~nNLK~i~v~iPLG~---------------~t~iTGVSGSGKSTLind~L~ 687 (956)
T TIGR00630 625 SGK--KKIEVPKERRKGNGKRVLTLKGARENNLKNITVSIPLGL---------------FTCITGVSGSGKSTLINDTLY 687 (956)
T ss_pred CCC--EECCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEECCCE---------------EEEEECCCCCCHHHHHHHHHH
T ss_conf 785--103676311258895599984201056402117740771---------------799974458745777999999
Q ss_pred HHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEE-------EEE----ECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 9998568011079997234210001257752000-------044----44178768999999866769999998077867
Q gi|254780606|r 435 SLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLT-------PVV----TNPKKAVMALKWAVREMEERYRKMSHLSVRNI 503 (744)
Q Consensus 435 sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~-------~v~----~~~~~~~~~l~~~~~em~~r~~~~~~~~~~~i 503 (744)
-.+++. |..-.-+.+.+..-+|+-||-- ||= .||-... .-++.=..||++.--...
T Consensus 688 ~~~~~~------L~~~~~~~g~~~~I~G~e~lDKvi~iDQsPIGRTPRSNPATYt-------gvFd~IR~LFA~~PeAk~ 754 (956)
T TIGR00630 688 PALARR------LNGAKTEPGRYKDIEGLEHLDKVIEIDQSPIGRTPRSNPATYT-------GVFDEIRELFAETPEAKA 754 (956)
T ss_pred HHHHHH------HHCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCC-------CCCHHHHHHHHCCCHHHH
T ss_conf 999999------8527645665203630002384688657743434688643201-------343057776405853787
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780606|r 504 KSYNE 508 (744)
Q Consensus 504 ~~~n~ 508 (744)
.+|+.
T Consensus 755 RGY~~ 759 (956)
T TIGR00630 755 RGYKP 759 (956)
T ss_pred CCCCC
T ss_conf 38899
No 408
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=91.22 E-value=1.1 Score=23.64 Aligned_cols=134 Identities=19% Similarity=0.246 Sum_probs=70.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECC-CC----CEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHH
Q ss_conf 69970787534479999999999856801107999723-42----10001257752000044441787689999998667
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDP-KM----LELSVYDGIPHLLTPVVTNPKKAVMALKWAVREME 489 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~-k~----~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~ 489 (744)
+.|.=..|-||| |-.+++++|..-.-.+.+++-| |+ +|+..+..++.+........ . .| ..++.
T Consensus 5 i~vytG~GKGKT----TAAlG~alRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~~i~~~~~g~~-~-----~~-~~~~~ 73 (159)
T cd00561 5 IQVYTGNGKGKT----TAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRG-F-----FW-TTEND 73 (159)
T ss_pred EEEEECCCCCHH----HHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHCCCCEEEECCCC-C-----CC-CCCCC
T ss_conf 999957999708----9999999998449998999998158987559999984899689988999-7-----32-27987
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEE
Q ss_conf 69999998077867999998864202677666543233867999844568767531035899999999964201358999
Q gi|254780606|r 490 ERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIM 569 (744)
Q Consensus 490 ~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihlil 569 (744)
.+....++. .++....... .-.|=+||.||+...+...--..++ +..+-. .|.-++|+||
T Consensus 74 ~~~~~~a~~------~~~~a~~~l~------------~~~~dlvVLDEi~~a~~~gli~~~~-v~~~l~-~rp~~~evVl 133 (159)
T cd00561 74 EEDIAAAAE------GWAFAKEAIA------------SGEYDLVILDEINYALGYGLLDVEE-VVDLLK-AKPEDLELVL 133 (159)
T ss_pred HHHHHHHHH------HHHHHHHHHH------------CCCCCEEEEHHHHHHHHCCCCCHHH-HHHHHH-HCCCCCEEEE
T ss_conf 999999999------9999999986------------8898999736689999859917999-999998-4899978999
Q ss_pred EECCCCCCCC
Q ss_conf 8516544441
Q gi|254780606|r 570 ATQRPSVDVI 579 (744)
Q Consensus 570 atQrp~~~vi 579 (744)
.-..+....+
T Consensus 134 TGr~~p~~L~ 143 (159)
T cd00561 134 TGRNAPKELI 143 (159)
T ss_pred ECCCCCHHHH
T ss_conf 6999999999
No 409
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=91.22 E-value=0.57 Score=25.66 Aligned_cols=73 Identities=27% Similarity=0.411 Sum_probs=42.2
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC----CCCCE-------ECCCCCCCCEEEEEEE--CHHHH
Q ss_conf 14846997078753447999999999985680110799972----34210-------0012577520000444--41787
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD----PKMLE-------LSVYDGIPHLLTPVVT--NPKKA 477 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD----~k~~~-------~~~~~~~ph~~~~v~~--~~~~~ 477 (744)
+++=++|+|.|+||||- +-..|+.+..- .++=+| .|+.+ ..-..++||++..++. +.-.+
T Consensus 2 ~~~~i~I~GPTAsGKT~----lai~LAk~~~~---eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa 74 (308)
T COG0324 2 KPKLIVIAGPTASGKTA----LAIALAKRLGG---EIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSA 74 (308)
T ss_pred CCCEEEEECCCCCCHHH----HHHHHHHHCCC---CEEECCHHHHCCCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCH
T ss_conf 96379998988757789----99999998299---289302355318886307999999985899787545683225549
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 6899999986676
Q gi|254780606|r 478 VMALKWAVREMEE 490 (744)
Q Consensus 478 ~~~l~~~~~em~~ 490 (744)
....+.+..+|++
T Consensus 75 ~~f~~~a~~~i~~ 87 (308)
T COG0324 75 AEFQRDALAAIDD 87 (308)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 410
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=91.22 E-value=0.21 Score=28.57 Aligned_cols=41 Identities=17% Similarity=0.326 Sum_probs=28.2
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE
Q ss_conf 211201148469970787534479999999999856801107999
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM 449 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l 449 (744)
|-+++.+.=.+-|.|..|||||++++.| .+| ..|+.=++.+
T Consensus 20 vsl~i~~Ge~~aliG~sGsGKSTLl~~l-~gl---~~p~~G~i~~ 60 (248)
T PRK11264 20 IDLEVKPGEVVAIIGPSGSGKTTLLRCI-NLL---EQPEAGTIRV 60 (248)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHH-HCC---CCCCCCEEEE
T ss_conf 1779879989999999998099999999-758---9999867999
No 411
>PRK09694 hypothetical protein; Provisional
Probab=91.21 E-value=0.9 Score=24.28 Aligned_cols=76 Identities=13% Similarity=0.115 Sum_probs=35.5
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEE
Q ss_conf 99999980778679999988642026776665432338679998445687675310358999999999642013589998
Q gi|254780606|r 491 RYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMA 570 (744)
Q Consensus 491 r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihlila 570 (744)
+..+++..+|..|+..=--+-..+...-+ +-.|-.-||||||....- ..+-.+|.++-+.=+++|.+.||-
T Consensus 408 Kr~LLap~~VGTiDQaLla~L~~kH~~LR-----~~gLa~kvvIiDEVHAYD----~Ym~~lL~~lL~wl~~~g~~viLL 478 (878)
T PRK09694 408 KRVFLGQIGVCTIDQVLISVLPVKHRFIR-----GLGIGRSVLIVDEVHAYD----AYMNGLLEAVLKAQAQVGGSVILL 478 (878)
T ss_pred HHHHCCCCEECCHHHHHHHHHCCCHHHHH-----HHHHCCCEEEEECCCCCC----HHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 22313771546799999987461489999-----998628748972533345----889999999999999839988999
Q ss_pred ECCCC
Q ss_conf 51654
Q gi|254780606|r 571 TQRPS 575 (744)
Q Consensus 571 tQrp~ 575 (744)
|=.-.
T Consensus 479 SATLP 483 (878)
T PRK09694 479 SATLP 483 (878)
T ss_pred ECCCC
T ss_conf 27898
No 412
>PRK02224 chromosome segregation protein; Provisional
Probab=91.16 E-value=0.24 Score=28.19 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=9.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 46997078753447999999999
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSL 436 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl 436 (744)
+.+|.|-+|||||..+-+|..+|
T Consensus 25 i~~I~G~NGsGKSsIldAI~~aL 47 (880)
T PRK02224 25 VTVIHGLNGSGKSSLLEACFFAL 47 (880)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 58998999998899999999998
No 413
>PRK05986 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=91.14 E-value=1.1 Score=23.59 Aligned_cols=134 Identities=16% Similarity=0.236 Sum_probs=67.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECC-CC----CEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHH
Q ss_conf 469970787534479999999999856801107999723-42----1000125775200004444178768999999866
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDP-KM----LELSVYDGIPHLLTPVVTNPKKAVMALKWAVREM 488 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~-k~----~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em 488 (744)
-+.|.=..|-||| |..++|++|..-...+.+++-| |+ +|...+. .+.+.. ...... .-|-....
T Consensus 24 li~VytG~GKGKT----TAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~-~~~i~~-~~~g~g-----~~~~~~~~ 92 (190)
T PRK05986 24 LLIVHTGNGKGKS----TAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLE-GPGVEF-HVMGTG-----FTWETQDR 92 (190)
T ss_pred EEEEEECCCCCHH----HHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHC-CCCCEE-EECCCC-----CCCCCCCC
T ss_conf 7999806998718----899999999836998899999944885457788743-798289-987899-----85778971
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 76999999807786799999886420267766654323386799984456876753103589999999996420135899
Q gi|254780606|r 489 EERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLI 568 (744)
Q Consensus 489 ~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gihli 568 (744)
++... .++. .++.-..... .-.|=+||.||+...+...--+.++.+ .+- ..|.-++|||
T Consensus 93 e~d~~-~a~~------~~~~a~~~l~------------~~~~dlvVLDEi~~Al~~gll~~eevi-~~L-~~rp~~~evV 151 (190)
T PRK05986 93 ERDIA-AARE------GWEEAKRMLA------------DESYDLVVLDELTYALKYGYLDLEEVL-EAL-NNRPGMQHVV 151 (190)
T ss_pred HHHHH-HHHH------HHHHHHHHHH------------CCCCCEEEHHHHHHHHHCCCCCHHHHH-HHH-HHCCCCCEEE
T ss_conf 89999-9999------9999999985------------888888953767999855995899999-999-8289987699
Q ss_pred EEECCCCCCCC
Q ss_conf 98516544441
Q gi|254780606|r 569 MATQRPSVDVI 579 (744)
Q Consensus 569 latQrp~~~vi 579 (744)
|.-..+....+
T Consensus 152 LTGR~~p~~L~ 162 (190)
T PRK05986 152 ITGRGAPRELI 162 (190)
T ss_pred EECCCCCHHHH
T ss_conf 97999999999
No 414
>pfam04317 DUF463 YcjX-like family, DUF463. Some members of this family are thought to possess an ATP-binding domain towards their N-terminus.
Probab=91.13 E-value=0.19 Score=28.96 Aligned_cols=88 Identities=18% Similarity=0.324 Sum_probs=41.5
Q ss_pred HHHHHCCHHHEEEEEECCCCCEE-CCCCCCCCE-EEEEEEC-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99985680110799972342100-012577520-0004444-17876899999986676999999807786799999886
Q gi|254780606|r 435 SLLYRLRPDECRMIMVDPKMLEL-SVYDGIPHL-LTPVVTN-PKKAVMALKWAVREMEERYRKMSHLSVRNIKSYNERIS 511 (744)
Q Consensus 435 sl~~~~~p~~~~~~liD~k~~~~-~~~~~~ph~-~~~v~~~-~~~~~~~l~~~~~em~~r~~~~~~~~~~~i~~~n~~~~ 511 (744)
..|..+..+. .|.++-|.+.-+ ..+++-|-| +.|.... ...+ .-..+..+|++||+..++.=|+-. |...+
T Consensus 180 ~yL~~~r~~~-gls~lqPGRFLLPGdleGaP~L~F~PL~~~~~~~~--~~~Sl~~~l~rRye~Yk~~VVkPF--fr~hF- 253 (443)
T pfam04317 180 AYLHACKEEQ-GLSFLQPGRFLLPGELEGAPALTFFPLPHLSEEQA--PKGSLYAMLERRYEAYKQHVVKPF--YRDHF- 253 (443)
T ss_pred HHHHHHHHHC-CCCCCCCCEEECCCCCCCCCCEEEECCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHCCHH--HHHHH-
T ss_conf 9999999854-86426884164366557885125524766554567--777489999999999999753588--99998-
Q ss_pred HHHCCCCCCCCCCCCCCCEEEEEHHHHHHHH
Q ss_conf 4202677666543233867999844568767
Q gi|254780606|r 512 TMYGEKPQGCGDDMRPMPYIVIIVDEMADLM 542 (744)
Q Consensus 512 ~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~ 542 (744)
..+=+-||.||=+..|.
T Consensus 254 --------------~r~DRQIVLVD~L~aLn 270 (443)
T pfam04317 254 --------------ARFDRQIVLVDCLQALN 270 (443)
T ss_pred --------------HCCCCEEEHHHHHHHHH
T ss_conf --------------60163343887677875
No 415
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=91.12 E-value=1.1 Score=23.58 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=9.5
Q ss_pred HCCCEEEEECCCCCHHH
Q ss_conf 14846997078753447
Q gi|254780606|r 411 NMPHILVAGTTGSGKSV 427 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~ 427 (744)
..=|+||.--||||||.
T Consensus 36 ~G~nvLiiAPTGsGKTe 52 (814)
T COG1201 36 SGENVLIIAPTGSGKTE 52 (814)
T ss_pred CCCCEEEECCCCCCHHH
T ss_conf 89846998689997379
No 416
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=91.12 E-value=0.39 Score=26.75 Aligned_cols=64 Identities=22% Similarity=0.304 Sum_probs=35.6
Q ss_pred CEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCE-------ECCCCCCCCEEE
Q ss_conf 732112011484699707875344799999999998568011079997234210-------001257752000
Q gi|254780606|r 403 ESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLE-------LSVYDGIPHLLT 468 (744)
Q Consensus 403 ~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~-------~~~~~~~ph~~~ 468 (744)
+.+-+++.+.-|.-+.|.+|+|||.+++. |++++-- .-.++++--+|-.... .+....-||++.
T Consensus 338 ~~l~~t~~~g~~talvG~SGaGKSTLl~l-L~G~~~~-~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~ 408 (559)
T COG4988 338 SDLNLTIKAGQLTALVGASGAGKSTLLNL-LLGFLAP-TQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA 408 (559)
T ss_pred CCCEEEECCCCEEEEECCCCCCHHHHHHH-HHCCCCC-CCCEEEECCCCCCCCCHHHHHHHEEEECCCCCCCC
T ss_conf 67106754896799988999978999999-8475777-78448889931000687788867246279984056
No 417
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=91.10 E-value=0.22 Score=28.42 Aligned_cols=54 Identities=24% Similarity=0.433 Sum_probs=33.1
Q ss_pred EEEEEEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE
Q ss_conf 6898420578873211201148469970787534479999999999856801107999
Q gi|254780606|r 392 LALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM 449 (744)
Q Consensus 392 l~~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l 449 (744)
|.+..|...-=+-+-+++.+.=.+.|-|-.|||||++|++ |.+++ .|..=++++
T Consensus 13 Ls~~yg~~~~l~~isl~I~~Ge~~~iiGpNGaGKSTLlk~-i~Gll---~p~~G~I~l 66 (265)
T PRK10253 13 LTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRT-LSRLM---TPAHGHVWL 66 (265)
T ss_pred EEEEECCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCEEEEE
T ss_conf 9999999999840288985997999999988399999999-97498---888529999
No 418
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=91.09 E-value=1.1 Score=23.56 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=38.9
Q ss_pred CEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 732112011484699707875344799999999998568011079997234
Q gi|254780606|r 403 ESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK 453 (744)
Q Consensus 403 ~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k 453 (744)
+.++..|..-|+++..|..|.|||-+-+-+--+|+-...++.++++=+-+-
T Consensus 185 ~~~~~sLktKknvIL~G~pGtGKT~lAk~lA~~l~g~~~~~rv~~Vqfhps 235 (459)
T PRK11331 185 ETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQS 235 (459)
T ss_pred HHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 999998545882796589998878999999999707887784689983588
No 419
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=91.08 E-value=0.1 Score=30.72 Aligned_cols=119 Identities=13% Similarity=0.229 Sum_probs=59.2
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEE-EEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHH--
Q ss_conf 48469970787534479999999999856801107-999723421000125775200004444178768999999866--
Q gi|254780606|r 412 MPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECR-MIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREM-- 488 (744)
Q Consensus 412 ~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~-~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em-- 488 (744)
.--|-|.|..|.|||..++..|..|-....-.++. |-.|.--|.- ++++..+-..|......-
T Consensus 293 G~cLYISGVPGTGKTATV~eVIr~L~~~~~~~~lp~F~fVEINGMk--------------Lt~P~qaY~~L~e~Ltg~k~ 358 (650)
T PTZ00112 293 GQILYISGVPGTGKTATVYMVIKELQNKKLKGQLPWFNLFEINGVN--------------LVHPNAAYRVFYKKLFNKKP 358 (650)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEE--------------CCCHHHHHHHHHHHHHCCCC
T ss_conf 6569997899998003699999999999970899981599973637--------------79878899999999848988
Q ss_pred ---HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEE
Q ss_conf ---76999999807786799999886420267766654323386799984456876753103589999999996420135
Q gi|254780606|r 489 ---EERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGI 565 (744)
Q Consensus 489 ---~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gi 565 (744)
...+.++.+. +. . .. ...|+++||+- ++.+..+.+--.|-.+..+-.|-=|
T Consensus 359 ~~~~~A~~lL~k~-----------F~-------~------~r-~p~VlLvDELD-~LvTkkQ~VlYNLFdWPT~~~SkLI 412 (650)
T PTZ00112 359 PNALNSYKELDKL-----------FN-------N------NR-TPSILIVDEAD-YIVTKTQKVLFTLFDWPTKKNSKLI 412 (650)
T ss_pred CCHHHHHHHHHHH-----------HC-------C------CC-CCEEEEECHHH-HHHHCCCCEEEECCCCCCCCCCEEE
T ss_conf 8678999999998-----------26-------8------99-71899971577-7763677457773668898887079
Q ss_pred EEEEE
Q ss_conf 89998
Q gi|254780606|r 566 HLIMA 570 (744)
Q Consensus 566 hlila 570 (744)
-+-+|
T Consensus 413 VIaIA 417 (650)
T PTZ00112 413 LIIIS 417 (650)
T ss_pred EEEEE
T ss_conf 99985
No 420
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.07 E-value=0.33 Score=27.26 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=17.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHH
Q ss_conf 6997078753447999999999
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSL 436 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl 436 (744)
+.|+|.+|||||.+-+.|.-.|
T Consensus 2 IgI~G~sgsGKTT~a~~L~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8988999885999999999980
No 421
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=91.05 E-value=0.64 Score=25.29 Aligned_cols=40 Identities=23% Similarity=0.283 Sum_probs=27.7
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEE
Q ss_conf 21120114846997078753447999999999985680110799
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMI 448 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~ 448 (744)
+-+++.+.=.+.|.|.-|+|||++|+. |++++ .|+.=++.
T Consensus 343 vs~~i~~Ge~iaivG~NGsGKSTLlk~-l~G~~---~p~~G~i~ 382 (556)
T PRK11819 343 LSFKLPPGGIVGIIGPNGAGKSTLFKM-ITGQE---QPDSGTIK 382 (556)
T ss_pred ECCCCCCCCEEEEECCCCCCHHHHHHH-HHCCC---CCCCCEEE
T ss_conf 402357882478988987758899999-83865---68885599
No 422
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.03 E-value=0.39 Score=26.80 Aligned_cols=44 Identities=23% Similarity=0.473 Sum_probs=30.2
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 2112011484699707875344799999999998568011079997234
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK 453 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k 453 (744)
|-.+++..--+.+-|..|+|||.+|| ++.+++ .|+.=++ .+|-+
T Consensus 24 vsL~ia~ge~vv~lGpSGcGKTTLLn-l~AGf~---~P~~G~i-~l~~r 67 (259)
T COG4525 24 VSLTIASGELVVVLGPSGCGKTTLLN-LIAGFV---TPSRGSI-QLNGR 67 (259)
T ss_pred CCEEECCCCEEEEECCCCCCHHHHHH-HHHCCC---CCCCCEE-EECCE
T ss_conf 55023589789997688865788999-986275---8566648-88998
No 423
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=91.02 E-value=0.98 Score=24.02 Aligned_cols=223 Identities=19% Similarity=0.205 Sum_probs=104.5
Q ss_pred ECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCC--CCCCCEEEEEEECHHHHHHHHHH
Q ss_conf 1120114846997078753447999999999985680110799972342100012--57752000044441787689999
Q gi|254780606|r 406 IADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVY--DGIPHLLTPVVTNPKKAVMALKW 483 (744)
Q Consensus 406 ~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~--~~~ph~~~~v~~~~~~~~~~l~~ 483 (744)
+.+++.-==+++.|..|.|||+.++.+|--...-.+++ + | ...| ++.+ ...+--..+|+.-|..
T Consensus 359 L~~~~~~Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~-l-----~-----~~~~vndd~~---v~LaAPTGrAAkRl~E 424 (769)
T TIGR01448 359 LKTAIQDKVVILTGGPGTGKTTITKAIIELYEELKGLD-L-----D-----KDDYVNDDLP---VVLAAPTGRAAKRLAE 424 (769)
T ss_pred HHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-C-----C-----CCCCCCCCCE---EEEECCCHHHHHHCCC
T ss_conf 99986094899857788861689999999998716877-5-----5-----3124567764---8873774378885110
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCC-CCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf 998667699999980778679999988642026776665-4323386799984456876753103589999999996420
Q gi|254780606|r 484 AVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCG-DDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARA 562 (744)
Q Consensus 484 ~~~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~-~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra 562 (744)
+-.+--.--. +.+ +|+.. ..... .-.+++++=+|||||+. ||+ + -++.+|-+ +=.
T Consensus 425 ~TG~~a~TIH--RLl------G~~~~--------~~~~~k~~~~~~~~DL~IvDE~S--M~D---t--~L~~~lL~-a~P 480 (769)
T TIGR01448 425 VTGLEALTIH--RLL------GYGSD--------TKSENKNLEDPIDADLLIVDESS--MVD---T--WLASSLLA-AVP 480 (769)
T ss_pred CCCCHHHHHH--HHH------CCCCC--------CCCCCHHHCCCCCCCEEEEECCC--HHH---H--HHHHHHHH-HCC
T ss_conf 0262123477--863------68988--------87321101134787769981462--188---9--99999986-179
Q ss_pred CEEEEEE---EECCCCCC---CCHHHHHHCCCCEEEEE-C-CCHHHCCHHCCCCCH--------HHHCCCCCEEEEC-CC
Q ss_conf 1358999---85165444---41467885056305720-3-681110032676316--------8856898468646-89
Q gi|254780606|r 563 AGIHLIM---ATQRPSVD---VITGTIKANFPIRISFQ-V-TSKIDSRTILGEHGA--------EQLLGRGDMLYMS-GG 625 (744)
Q Consensus 563 ~Gihlil---atQrp~~~---vi~~~ik~n~~~ri~~~-v-~~~~dsr~il~~~ga--------e~l~g~gd~l~~~-~~ 625 (744)
-+-.||| +-|=|||+ |+..+|.+|.==++-|- | --...|.+|....+- ..--+++|+.|.. ..
T Consensus 481 ~~a~lllVGD~DQLPSV~pG~VL~DLi~s~~iP~~~LT~vyRQ~~~S~Ii~~Ah~~~~G~~Pvlnss~~~~Df~~~~~~~ 560 (769)
T TIGR01448 481 DHARLLLVGDADQLPSVGPGQVLKDLIQSKVIPVTRLTKVYRQAEGSSIITLAHKILQGEAPVLNSSSAKKDFKFLKLDR 560 (769)
T ss_pred CCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCEEECCCEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 77779888376888988644089999846886612121112411366467888987317887523244676677776400
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 8438999343898899999999984088753111124555544
Q gi|254780606|r 626 GRIQRVHGPLVSDIEIEKVVQHLKKQGCPEYLNTVTTDTDTDK 668 (744)
Q Consensus 626 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (744)
+.+--.+..- -.=|++|+.-.+..|-+--+-.++.....+.
T Consensus 561 s~~e~~~~~i--~~~v~~~~~~a~~~Gi~~~dIQVLaPM~kG~ 601 (769)
T TIGR01448 561 SEPEEAAKHI--PLMVEKIVGAAKKKGIPGADIQVLAPMYKGE 601 (769)
T ss_pred CCHHHHHHHH--HHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
T ss_conf 1010666789--9999887789871798600001525898984
No 424
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.02 E-value=0.23 Score=28.31 Aligned_cols=24 Identities=33% Similarity=0.750 Sum_probs=14.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 846997078753447999999999
Q gi|254780606|r 413 PHILVAGTTGSGKSVAINTMIMSL 436 (744)
Q Consensus 413 PH~lvaG~TgsGKS~~l~~~i~sl 436 (744)
|=.||+|.-|+|||.||+++.++|
T Consensus 29 ~i~li~G~NG~GKTTll~Ai~~~L 52 (650)
T TIGR03185 29 PIILIGGLNGAGKTTLLDAIQLGL 52 (650)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 879997799997899999999995
No 425
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=90.98 E-value=1.2 Score=23.49 Aligned_cols=184 Identities=23% Similarity=0.297 Sum_probs=99.8
Q ss_pred CCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEE-C----HHHHHHHH
Q ss_conf 120114846997078753447999999999985680110799972342100012577520000444-4----17876899
Q gi|254780606|r 407 ADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVT-N----PKKAVMAL 481 (744)
Q Consensus 407 ~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~-~----~~~~~~~l 481 (744)
.-+.|.=-.||..-..+|||++|+.|.-|+...|+--+|-++|||-.--|-+.+...- .+-|+. . ++.... .
T Consensus 164 aPIGkGQRgLIVAPPkaGKT~lLq~IA~aI~~N~Pe~~liVLLIDERPEEVTdm~r~v--~~eV~aStfD~~~~~H~~-v 240 (416)
T PRK09376 164 APIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSV--KGEVVASTFDEPAERHVQ-V 240 (416)
T ss_pred CCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHC--CEEEEEECCCCCHHHHHH-H
T ss_conf 5413585003756998754799999999998569971999999048934777877504--618999779998789999-9
Q ss_pred HHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 9999866-769999998077867999998864202677666543233867999844568767531035899999999964
Q gi|254780606|r 482 KWAVREM-EERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMA 560 (744)
Q Consensus 482 ~~~~~em-~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ 560 (744)
.|| -+|.+.|.+.| . -+||.+| .|.++|
T Consensus 241 ----ae~~lerAkRlvE~G-----------------------~------DVvillD------------------SiTRLa 269 (416)
T PRK09376 241 ----AEMVIEKAKRLVEHG-----------------------K------DVVILLD------------------SITRLA 269 (416)
T ss_pred ----HHHHHHHHHHHHHCC-----------------------C------CEEEEEC------------------CHHHHH
T ss_conf ----999999999998769-----------------------9------7899973------------------157888
Q ss_pred HCCEEEEEEEECCCCCCCCHHHHHHCCCC---EE--EEECCCHHHCCHHCCC----CC-------HHHHCCCCCE-EEEC
Q ss_conf 20135899985165444414678850563---05--7203681110032676----31-------6885689846-8646
Q gi|254780606|r 561 RAAGIHLIMATQRPSVDVITGTIKANFPI---RI--SFQVTSKIDSRTILGE----HG-------AEQLLGRGDM-LYMS 623 (744)
Q Consensus 561 ra~GihlilatQrp~~~vi~~~ik~n~~~---ri--~~~v~~~~dsr~il~~----~g-------ae~l~g~gd~-l~~~ 623 (744)
||+-. ++.++-.+++|.+-+|.=. |. |-|-.....|=|||.. .| -|-+.|-|.| |++.
T Consensus 270 RAyN~-----~~~~sGr~lsGG~D~~Al~~PKrfFGAARnie~GGSLTIiaTaLveTgSrMDdvIfeEfkgTgNmEl~Ld 344 (416)
T PRK09376 270 RAYNT-----VVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLD 344 (416)
T ss_pred HHHHC-----CCCCCCCCCCCCCCHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEC
T ss_conf 88623-----4699877544765777760556764100267767517787777752686253899998515784599987
Q ss_pred CC-C-C-E----------EEEEECCCCHHHHHHHHHHHH
Q ss_conf 89-8-4-3----------899934389889999999998
Q gi|254780606|r 624 GG-G-R-I----------QRVHGPLVSDIEIEKVVQHLK 649 (744)
Q Consensus 624 ~~-~-~-~----------~r~~~~~~~~~~~~~~~~~~~ 649 (744)
-. + + + .|----+++++|.++|-..-+
T Consensus 345 r~la~~RifPAIdi~~SgTRkEelLl~~~e~~~~~~lRr 383 (416)
T PRK09376 345 RKLAEKRIFPAIDINRSGTRKEELLLSPEELQKVWILRK 383 (416)
T ss_pred HHHHHCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHH
T ss_conf 667757886401333577725765379999999999999
No 426
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.91 E-value=0.14 Score=29.82 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=18.5
Q ss_pred HCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 14846997078753447999999
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMI 433 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i 433 (744)
+.--+-|.|..|||||+||++|=
T Consensus 31 ~GdVisIIGsSGSGKSTfLRCiN 53 (256)
T COG4598 31 AGDVISIIGSSGSGKSTFLRCIN 53 (256)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 89889996589986268999998
No 427
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=90.90 E-value=0.69 Score=25.05 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=23.1
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCH
Q ss_conf 14846997078753447999999999985680
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRP 442 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p 442 (744)
+--.+|+.|..|+|||.+|+.+.-.-+-...|
T Consensus 13 ~~~KililG~~~sGKTsll~~l~~~~~~~~~p 44 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISP 44 (173)
T ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 73189999899978899999983999897267
No 428
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=90.79 E-value=0.8 Score=24.63 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=31.4
Q ss_pred EEEEEEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEE
Q ss_conf 689842057887321120114846997078753447999999999985680110799
Q gi|254780606|r 392 LALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMI 448 (744)
Q Consensus 392 l~~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~ 448 (744)
|.+..|...-=+-+-+++.+.-.+-|.|-.|||||.+|++| ++++ .|+.=++.
T Consensus 8 Ls~~yG~~~~L~~Vsl~I~~GEi~gLIGPNGAGKSTLLk~I-~Gll---~P~~G~V~ 60 (409)
T PRK09536 8 LDVEFGGTTILDGVDLSVREGHLVGVVGPNGAGKTTLLRAM-NGLI---TPTAGTVL 60 (409)
T ss_pred EEEEECCEEEEECEEEEECCCCEEEEECCCCCHHHHHHHHH-HCCC---CCCCEEEE
T ss_conf 89999999989250889889989999999872799999999-6688---88963999
No 429
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=90.75 E-value=0.13 Score=30.13 Aligned_cols=22 Identities=32% Similarity=0.678 Sum_probs=16.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHH
Q ss_conf 4699707875344799999999
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMS 435 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~s 435 (744)
=++|||-||||||+=|==|++-
T Consensus 86 VviiAGETGSGKTTQLPKICLE 107 (1320)
T TIGR01967 86 VVIIAGETGSGKTTQLPKICLE 107 (1320)
T ss_pred EEEEECCCCCCCCCCCHHHHHH
T ss_conf 8999724487620232167775
No 430
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=90.73 E-value=0.24 Score=28.24 Aligned_cols=40 Identities=28% Similarity=0.359 Sum_probs=27.9
Q ss_pred EEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEE
Q ss_conf 32112011484699707875344799999999998568011079
Q gi|254780606|r 404 SVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRM 447 (744)
Q Consensus 404 ~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~ 447 (744)
.+-+++.+.=++-|.|.-|||||++|+. |++++ .|+.=++
T Consensus 330 ~vsl~i~~GeriaIvG~NGsGKSTLlk~-L~G~l---~p~~G~i 369 (638)
T PRK10636 330 SIKLNLVPGSRIGLLGRNGAGKSTLIKL-LAGEL---APVSGEI 369 (638)
T ss_pred CCCCEECCCCEEEEECCCCCCHHHHHHH-HCCCC---CCCCCEE
T ss_conf 7750563784799974787138899999-72887---8888569
No 431
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.71 E-value=0.17 Score=29.26 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=23.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHE
Q ss_conf 46997078753447999999999985680110
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDEC 445 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~ 445 (744)
--.+-|.||+|||.+|.++-+-|=.+...+-+
T Consensus 23 lnVlTGETGAGKSIlidAL~lllG~Ra~~~~I 54 (276)
T cd03241 23 LTVLTGETGAGKSILLDALSLLLGGRASADLI 54 (276)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 75887899888999999999962899884533
No 432
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.69 E-value=0.3 Score=27.54 Aligned_cols=49 Identities=24% Similarity=0.403 Sum_probs=33.5
Q ss_pred EEECCCCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEE
Q ss_conf 42057887321120----114846997078753447999999999985680110799
Q gi|254780606|r 396 LGKTISGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMI 448 (744)
Q Consensus 396 ~g~~~~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~ 448 (744)
|.+..++++++-|+ ...=.+.|-|..|+|||++|+ +|++|+ .|+.=++.
T Consensus 17 ls~~~~~~~vl~~isf~v~~Ge~~~l~GpNGaGKTTLlr-~l~Gl~---~p~~G~I~ 69 (214)
T PRK13543 17 LAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLR-VLAGLL---HVESGQIQ 69 (214)
T ss_pred EEEEECCEEEEECEEEEECCCCEEEEECCCCCCHHHHHH-HHHCCC---CCCCEEEE
T ss_conf 799979999982638898189899999999987999999-997697---78841999
No 433
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=90.65 E-value=0.46 Score=26.29 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=22.4
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 148469970787534479999999999
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
+..+.+|...||||||.+.-.++..++
T Consensus 17 ~~~~~~i~~pTGsGKT~~~~~~i~~~~ 43 (103)
T pfam04851 17 EKKRGLIVMATGSGKTLTAAKLIARLL 43 (103)
T ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 639869995899987999999999998
No 434
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=90.60 E-value=0.94 Score=24.16 Aligned_cols=93 Identities=17% Similarity=0.232 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHCCCCCE-----------EEEECCCCEEEEECCCC-CCCEEEHHHHHCCHHHCCCCCCEEEEEEECCCCC
Q ss_conf 85999999871477632-----------77518983454426888-8870765875128121146783689842057887
Q gi|254780606|r 336 IGLADDIARSMSSLSAR-----------VAVIPKRNAIGIELPNE-TRETVYLRQIIESRSFSHSKANLALCLGKTISGE 403 (744)
Q Consensus 336 ~~~~~d~~~~~~~~~~~-----------~~~~pg~~~~~~~~p~~-~~~~v~~~~~~~~~~~~~~~~~l~~~~g~~~~g~ 403 (744)
+.++.-+|.+|--..-. ....-|...=-+|+... ++..-.+|++.+.-.|..+..+- +
T Consensus 52 ts~Ari~AkaLnC~~~~~~~pC~~C~~C~~i~~g~~~DviEiDaasn~gVd~IR~i~~~v~~~P~~~~y----------K 121 (563)
T PRK06674 52 TSIAKVFAKAVNCEHAPVAEPCNECPSCLGITNGSISDVLEIDAASNNGVDEIRDIRDKVKFAPSAVEY----------K 121 (563)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCE----------E
T ss_conf 999999999857999999887766878999855899877985255557879999999982648867873----------7
Q ss_pred EEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC
Q ss_conf 321120114846997078753447999999999985680110799972
Q gi|254780606|r 404 SVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD 451 (744)
Q Consensus 404 ~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD 451 (744)
.+|.|-+ |+|-. ..-|+++-. +--+|..+.|+|+-
T Consensus 122 V~IIDea---h~Lt~--------~A~NALLKt--LEEPP~~viFILaT 156 (563)
T PRK06674 122 VYIIDEV---HMLSI--------GAFNALLKT--LEEPPGHVIFILAT 156 (563)
T ss_pred EEEEECH---HHCCH--------HHHHHHHHH--HHCCCCCEEEEEEC
T ss_conf 9998545---63799--------999999998--63887564999965
No 435
>PRK10869 recombination and repair protein; Provisional
Probab=90.60 E-value=0.18 Score=29.08 Aligned_cols=33 Identities=9% Similarity=0.148 Sum_probs=16.3
Q ss_pred CEEEECCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 468646898438999343898899999999984
Q gi|254780606|r 618 DMLYMSGGGRIQRVHGPLVSDIEIEKVVQHLKK 650 (744)
Q Consensus 618 d~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 650 (744)
+|||.++.|.+.+--.--.|-.|+.||.=-+|.
T Consensus 413 efl~s~N~G~~~~pL~kiASGGElSRimLAlk~ 445 (553)
T PRK10869 413 EFRVTTNPGQPLQPIAKVASGGELSRIALAIQV 445 (553)
T ss_pred EEEEECCCCCCCCCHHHHCCHHHHHHHHHHHHH
T ss_conf 999952899997617776366089999999999
No 436
>COG4928 Predicted P-loop ATPase [General function prediction only]
Probab=90.57 E-value=0.51 Score=26.00 Aligned_cols=32 Identities=38% Similarity=0.437 Sum_probs=15.1
Q ss_pred CEEECCHHHCCCEEEE-ECCCCCHHHHHHHHHH
Q ss_conf 7321120114846997-0787534479999999
Q gi|254780606|r 403 ESVIADLANMPHILVA-GTTGSGKSVAINTMIM 434 (744)
Q Consensus 403 ~~~~~dl~~~PH~lva-G~TgsGKS~~l~~~i~ 434 (744)
.-.+.+++..--+-|+ |.+|+|||.++|.+.-
T Consensus 42 ~ssI~~l~~~~~l~v~sG~wG~gKSt~~n~~~s 74 (646)
T COG4928 42 KSSICKLAPRGILVVASGEWGTGKSTLSNNLSS 74 (646)
T ss_pred HHHHHHHCCCCCEEEECCCCCCCHHHHHHCCCC
T ss_conf 999886336876377405666650377643441
No 437
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=90.52 E-value=0.26 Score=28.04 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=26.7
Q ss_pred CCCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 7887321120----1148469970787534479999999999
Q gi|254780606|r 400 ISGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 400 ~~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
-.|+.++-|+ .+.--+-|-|..|||||+++++| ++++
T Consensus 11 ~~~~~vL~~vsl~i~~Ge~~aliG~nGaGKSTLl~~i-~G~l 51 (273)
T PRK13547 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKVL-AGEL 51 (273)
T ss_pred ECCEEEEECEEEEECCCCEEEEECCCCCHHHHHHHHH-HCCC
T ss_conf 9999999760889989989999999997699999999-5678
No 438
>PRK00254 ski2-like helicase; Provisional
Probab=90.40 E-value=0.56 Score=25.69 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHC----CEEEEEEEECC
Q ss_conf 999999996420----13589998516
Q gi|254780606|r 551 GAIQRLAQMARA----AGIHLIMATQR 573 (744)
Q Consensus 551 ~~~~~la~~~ra----~GihlilatQr 573 (744)
+..+-++|-||. .|--+|+|...
T Consensus 361 e~~QM~GRAGR~G~D~~G~~iii~~~~ 387 (717)
T PRK00254 361 EIQQMMGRAGRPKYDEVGEAIIVSTTE 387 (717)
T ss_pred HHHHHHHHCCCCCCCCCCEEEEEECCC
T ss_conf 688862506999878885089995485
No 439
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=90.35 E-value=1.3 Score=23.12 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=24.5
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 14846997078753447999999999985
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYR 439 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~ 439 (744)
+.--+||.|..|+|||+|-+.++.+.|..
T Consensus 23 ~gs~~li~G~~GtGKsi~~~~~~~~~l~~ 51 (230)
T PRK08533 23 FGSIILIEGDESTGKSILSQRLAYGFLQN 51 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 98489998689987899999999999878
No 440
>PRK12678 transcription termination factor Rho; Provisional
Probab=90.33 E-value=1.3 Score=23.11 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=41.8
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCC
Q ss_conf 01148469970787534479999999999856801107999723421000125
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYD 461 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~ 461 (744)
+.|.-..||..-..+||+++|+.|.-++...|+--+|-++|||-.=-|-+.+.
T Consensus 408 iGkGQRgLIVapPkaGKT~ll~~ia~ai~~N~pe~~l~vlLiDERPEEVTdm~ 460 (667)
T PRK12678 408 IGKGQRGLIVSPPKAGKTTILQDIANAITTNNPECHLMVVLVDERPEEVTDMQ 460 (667)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH
T ss_conf 67884546757997872599999999998569972899997378851566766
No 441
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=90.22 E-value=0.33 Score=27.25 Aligned_cols=44 Identities=30% Similarity=0.566 Sum_probs=29.9
Q ss_pred CCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEE
Q ss_conf 887321120----114846997078753447999999999985680110799
Q gi|254780606|r 401 SGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMI 448 (744)
Q Consensus 401 ~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~ 448 (744)
.+++++-|+ .+.-++.|.|..|||||++++. |++++ .|+.=+++
T Consensus 10 ~~~~il~~is~~i~~Ge~~~liG~nGsGKTTLl~~-i~G~~---~~~~G~I~ 57 (180)
T cd03214 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKT-LAGLL---KPSSGEIL 57 (180)
T ss_pred CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHH-HHCCC---CCCCCEEE
T ss_conf 99998804377886997999998999889999999-95798---99872899
No 442
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=90.17 E-value=0.35 Score=27.09 Aligned_cols=144 Identities=19% Similarity=0.356 Sum_probs=67.2
Q ss_pred CCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCC------------CCCCCEEEEEEE--
Q ss_conf 120114846997078753447999999999985680110799972342100012------------577520000444--
Q gi|254780606|r 407 ADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVY------------DGIPHLLTPVVT-- 472 (744)
Q Consensus 407 ~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~------------~~~ph~~~~v~~-- 472 (744)
+.+-+.-..+|.|-.|+|||+||+ ++++|+ +|+.=.++. +|-..+.| ..-|-|+..-|.
T Consensus 24 l~v~~Ge~iaitGPSG~GKStllk-~va~Li---sp~~G~l~f---~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDN 96 (223)
T COG4619 24 LSVRAGEFIAITGPSGCGKSTLLK-IVASLI---SPTSGTLLF---EGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDN 96 (223)
T ss_pred EEECCCCEEEEECCCCCCHHHHHH-HHHHCC---CCCCCEEEE---CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHC
T ss_conf 665388548876788766889999-998136---998852887---4733443485999999999972842146633223
Q ss_pred ------------CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHH
Q ss_conf ------------417876899999986676999999807786799-9998864202677666543233867999844568
Q gi|254780606|r 473 ------------NPKKAVMALKWAVREMEERYRKMSHLSVRNIKS-YNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMA 539 (744)
Q Consensus 473 ------------~~~~~~~~l~~~~~em~~r~~~~~~~~~~~i~~-~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a 539 (744)
|++.+...|..+. ...+ .+ ...+.++.+ -.++++-. ..+..+|-|++ .||.-
T Consensus 97 lifP~~~r~rr~dr~aa~~llar~~--l~~~--~L-~k~it~lSGGE~QriAli---------R~Lq~~P~ILL-LDE~T 161 (223)
T COG4619 97 LIFPWQIRNRRPDRAAALDLLARFA--LPDS--IL-TKNITELSGGEKQRIALI---------RNLQFMPKILL-LDEIT 161 (223)
T ss_pred CCCCHHHHCCCCCHHHHHHHHHHCC--CCHH--HH-CCHHHHCCCHHHHHHHHH---------HHHHCCCCEEE-ECCCH
T ss_conf 1142577536888679999998707--9646--64-140233166078999999---------98630774687-33714
Q ss_pred HHHH-HCCHHHHHHHHHHHHHHHCCEEEEEEEECCCC
Q ss_conf 7675-31035899999999964201358999851654
Q gi|254780606|r 540 DLMM-VAGKEIEGAIQRLAQMARAAGIHLIMATQRPS 575 (744)
Q Consensus 540 ~l~~-~~~~~~e~~~~~la~~~ra~GihlilatQrp~ 575 (744)
.-.. ..+..+|.+|-++.+- --+-.+--|--++
T Consensus 162 sALD~~nkr~ie~mi~~~v~~---q~vAv~WiTHd~d 195 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVRE---QNVAVLWITHDKD 195 (223)
T ss_pred HHCCHHHHHHHHHHHHHHHHH---HCEEEEEEECCHH
T ss_conf 333825688899999997004---2458999953858
No 443
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=90.17 E-value=1.4 Score=23.02 Aligned_cols=74 Identities=26% Similarity=0.423 Sum_probs=44.6
Q ss_pred EEEEHHHHHHHHHHCC-------HHHHHHHHH-HHHH---HHCCEEEEEEEECCCCCCCCHH-HHH-HCCCCEEEEECCC
Q ss_conf 9998445687675310-------358999999-9996---4201358999851654444146-788-5056305720368
Q gi|254780606|r 531 IVIIVDEMADLMMVAG-------KEIEGAIQR-LAQM---ARAAGIHLIMATQRPSVDVITG-TIK-ANFPIRISFQVTS 597 (744)
Q Consensus 531 ivvviDE~a~l~~~~~-------~~~e~~~~~-la~~---~ra~GihlilatQrp~~~vi~~-~ik-~n~~~ri~~~v~~ 597 (744)
-+|+|||+-.+-..-+ .+-+..+.. |..| ...-||-+|-||.||+ +|.. ++| .-|.-+|.+-..+
T Consensus 246 ~IIFIDEiDaig~~R~~~~~gg~~e~~~tlNqlL~EmDGf~~~~~ViviaATNrpd--~LD~ALlRPGRFDr~I~V~lPd 323 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD--VLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred EEEEEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC--CCCHHHHCCCCCCEEEEECCCC
T ss_conf 79999532203666789888983288878999999954888878769996269975--5477771688865599977989
Q ss_pred HHHCCHHCC
Q ss_conf 111003267
Q gi|254780606|r 598 KIDSRTILG 606 (744)
Q Consensus 598 ~~dsr~il~ 606 (744)
..+=..||.
T Consensus 324 ~~~R~~ILk 332 (644)
T PRK10733 324 VRGREQILK 332 (644)
T ss_pred HHHHHHHHH
T ss_conf 889999999
No 444
>pfam00350 Dynamin_N Dynamin family.
Probab=90.14 E-value=0.21 Score=28.60 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=18.0
Q ss_pred EEEEECCCCCHHHHHHHHHHH
Q ss_conf 699707875344799999999
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMS 435 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~s 435 (744)
+.|.|.++||||.+||+|+-.
T Consensus 1 ivvvG~~ssGKSSliNALlG~ 21 (168)
T pfam00350 1 IAVVGDQSAGKSSVLNALLGR 21 (168)
T ss_pred CEEECCCCCCHHHHHHHHHCC
T ss_conf 989917889899999999788
No 445
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.13 E-value=0.26 Score=27.95 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=26.2
Q ss_pred CEEECCHHHCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 73211201148469970787534479999999
Q gi|254780606|r 403 ESVIADLANMPHILVAGTTGSGKSVAINTMIM 434 (744)
Q Consensus 403 ~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~ 434 (744)
+-|-+++.+.-|+-|-|..|||||++|++|--
T Consensus 21 ~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 21 KDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 35767757986899987888868999999866
No 446
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=90.12 E-value=0.22 Score=28.49 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=20.9
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 148469970787534479999999999
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
+.--.||||+.|+|||+|.+++---++
T Consensus 262 raeGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 262 RAEGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred HHCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 416469956999974689999999998
No 447
>PRK13764 ATPase; Provisional
Probab=90.11 E-value=0.36 Score=26.99 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=22.5
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 148469970787534479999999999
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
+.--+||+|+.|+|||+|-+++-.-+.
T Consensus 258 ~a~GilIaG~PGaGKsTfaqalA~~~~ 284 (605)
T PRK13764 258 RAEGILIAGAPGAGKSTFAQALAEFYA 284 (605)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 366499977999977899999999998
No 448
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=90.06 E-value=0.29 Score=27.69 Aligned_cols=42 Identities=24% Similarity=0.498 Sum_probs=29.3
Q ss_pred CCCEEE----CCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEE
Q ss_conf 887321----1201148469970787534479999999999856801107
Q gi|254780606|r 401 SGESVI----ADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECR 446 (744)
Q Consensus 401 ~g~~~~----~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~ 446 (744)
.|+.++ +++.+.-++.|.|.-|||||++|+. |++++ .|+.=+
T Consensus 330 ~~~~~l~~vsl~i~~Ge~ialvG~NGsGKSTLlk~-l~G~l---~p~~G~ 375 (632)
T PRK11147 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKL-MLGQL---QADSGR 375 (632)
T ss_pred CCEEEEEEECCCCCCCCEEEEECCCCCCHHHHHHH-HHCCC---CCCCCE
T ss_conf 99767765333357887799988988427799998-60666---899877
No 449
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=90.02 E-value=0.33 Score=27.31 Aligned_cols=57 Identities=23% Similarity=0.379 Sum_probs=33.3
Q ss_pred EEEEEEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 68984205788732112011484699707875344799999999998568011079997234
Q gi|254780606|r 392 LALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK 453 (744)
Q Consensus 392 l~~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k 453 (744)
|....|...-=+-+-+++.+.-.+.+.|..|+|||++++. |++++ .|+.=.+ ..+.+
T Consensus 10 ls~~yg~~~vL~~vs~~i~~Gei~~LiGpNGaGKSTLlk~-I~Gl~---~p~~G~I-~~~~~ 66 (251)
T PRK09544 10 VSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRV-VLGLV---APDEGVI-KRNGK 66 (251)
T ss_pred EEEEECCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHH-HHCCC---CCCCCEE-EECCC
T ss_conf 8999999999963078987997999998999889999999-96688---8986089-99994
No 450
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=90.01 E-value=0.32 Score=27.36 Aligned_cols=49 Identities=24% Similarity=0.434 Sum_probs=31.1
Q ss_pred EEEEEEECCCCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEE
Q ss_conf 689842057887321120----114846997078753447999999999985680110799
Q gi|254780606|r 392 LALCLGKTISGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMI 448 (744)
Q Consensus 392 l~~~~g~~~~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~ 448 (744)
|.+..| ++.++-|+ .+.=.+-+.|-.|+|||++|++ |++++ .|+.=++.
T Consensus 8 ls~~yg----~~~~L~~isl~i~~Gei~~liGpNGaGKSTLlk~-i~Gl~---~p~sG~I~ 60 (255)
T PRK11231 8 LTVGYG----TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKC-FARLL---TPQSGTVF 60 (255)
T ss_pred EEEEEC----CEEEEECCEEEECCCCEEEEECCCCCHHHHHHHH-HHCCC---CCCCCEEE
T ss_conf 999999----9999823088998997999999999819999999-97598---88864899
No 451
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=89.98 E-value=0.6 Score=25.48 Aligned_cols=30 Identities=27% Similarity=0.491 Sum_probs=21.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEE
Q ss_conf 4699707875344799999999998568011079
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRM 447 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~ 447 (744)
.+-+.|..|||||++++. |++++ .|+.=++
T Consensus 28 i~gLiGpNGaGKSTLlk~-i~Gll---~P~~G~i 57 (255)
T cd03236 28 VLGLVGPNGIGKSTALKI-LAGKL---KPNLGKF 57 (255)
T ss_pred EEEEECCCCCCHHHHHHH-HHCCC---CCCCCEE
T ss_conf 999989999709999999-96798---6887547
No 452
>TIGR01184 ntrCD nitrate ABC transporter, ATP-binding proteins C and D; InterPro: IPR005890 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. ; GO: 0015112 nitrate transmembrane transporter activity, 0015706 nitrate transport, 0016020 membrane.
Probab=89.97 E-value=1.4 Score=23.02 Aligned_cols=145 Identities=21% Similarity=0.370 Sum_probs=77.2
Q ss_pred HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC-------CC-CCEECCCCCCCCEEEEEEECHHHHHHHH
Q ss_conf 114846997078753447999999999985680110799972-------34-2100012577520000444417876899
Q gi|254780606|r 410 ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD-------PK-MLELSVYDGIPHLLTPVVTNPKKAVMAL 481 (744)
Q Consensus 410 ~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD-------~k-~~~~~~~~~~ph~~~~v~~~~~~~~~~l 481 (744)
.+.--+-+-|-.|-|||++|| ||.+|- .|..=.++|-. |. |+-|-.|.-+|- ..+-.|..-|+...
T Consensus 9 ~~GEFisliGHSGCGKSTLLN-li~Gl~---~P~~G~v~L~G~~i~~PGPdRMVVFQNYsLlPW--~tvr~NiaLAV~~v 82 (230)
T TIGR01184 9 RQGEFISLIGHSGCGKSTLLN-LISGLA---QPTSGGVILEGKQITEPGPDRMVVFQNYSLLPW--LTVRENIALAVDRV 82 (230)
T ss_pred ECCCEEEEECCCCCCHHHHHH-HHHHCC---CCCCCCEEECCEECCCCCCCEEEEEECCCCCCH--HHHHHHHHHHHHHH
T ss_conf 267369985127861789999-985005---777761676262417876960478506200322--56888999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHH------------HHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHH-HHHHHHHCCHH
Q ss_conf 999986676999999807786799------------99988642026776665432338679998445-68767531035
Q gi|254780606|r 482 KWAVREMEERYRKMSHLSVRNIKS------------YNERISTMYGEKPQGCGDDMRPMPYIVIIVDE-MADLMMVAGKE 548 (744)
Q Consensus 482 ~~~~~em~~r~~~~~~~~~~~i~~------------~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE-~a~l~~~~~~~ 548 (744)
..-..+-|+|.-.-.+...-++.. -.+|++..+. +.--|.+ ++.|| |-.|-.....+
T Consensus 83 ~~~~~~~E~~~iv~~~~~lVgL~~Aa~K~p~~lSGGMKQRVAIARa---------Ls~RP~~-LlLDEPFGALDAlTr~~ 152 (230)
T TIGR01184 83 LRDLSKSERRAIVEEHIDLVGLREAADKRPGQLSGGMKQRVAIARA---------LSIRPKV-LLLDEPFGALDALTRGN 152 (230)
T ss_pred HHHCCHHHHHHHHHHHHHHHCCHHHHCCCCHHCCCCHHHHHHHHHH---------HHHCCEE-EEEECCCCHHHHHHHHH
T ss_conf 8621354799999988864021234117800305842689999866---------5317601-23108740566752688
Q ss_pred HHHHHHHHHHHHHCCEEEEEEEECC
Q ss_conf 8999999999642013589998516
Q gi|254780606|r 549 IEGAIQRLAQMARAAGIHLIMATQR 573 (744)
Q Consensus 549 ~e~~~~~la~~~ra~GihlilatQr 573 (744)
..+.+.+|.+-.+ +-.|+-|--
T Consensus 153 LQe~L~~I~~e~~---~T~~MvTHD 174 (230)
T TIGR01184 153 LQEELLQIVEEAR---VTVVMVTHD 174 (230)
T ss_pred HHHHHHHHHHHCC---CEEEEEECC
T ss_conf 9999999873169---748998524
No 453
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=89.97 E-value=1.4 Score=22.91 Aligned_cols=40 Identities=20% Similarity=0.454 Sum_probs=26.5
Q ss_pred ECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE
Q ss_conf 11201148469970787534479999999999856801107999
Q gi|254780606|r 406 IADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM 449 (744)
Q Consensus 406 ~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l 449 (744)
-+++.+.--+-+.|--|+|||++++. |++++ .|+.=++.+
T Consensus 20 s~~v~~Gei~~llGpNGAGKSTll~~-i~Gl~---~p~~G~I~~ 59 (232)
T cd03218 20 SLSVKQGEIVGLLGPNGAGKTTTFYM-IVGLV---KPDSGKILL 59 (232)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHH-HHCCC---CCCCEEEEE
T ss_conf 67989995999999999619999999-97799---998629999
No 454
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=89.91 E-value=0.6 Score=25.47 Aligned_cols=84 Identities=30% Similarity=0.400 Sum_probs=48.0
Q ss_pred EEEECCCCCCCEEEHHHHHCCHHH-CCC--CCCEEEEEEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 544268888870765875128121-146--78368984205788732112011484699707875344799999999998
Q gi|254780606|r 362 IGIELPNETRETVYLRQIIESRSF-SHS--KANLALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLY 438 (744)
Q Consensus 362 ~~~~~p~~~~~~v~~~~~~~~~~~-~~~--~~~l~~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~ 438 (744)
++=--|+.+.+.++=.-=|.+..- +++ ..+--|.||++ .|..+..| -.=|+|++|-|||||+|.+ +|-.||.
T Consensus 107 ~~~~~~~~~~e~l~G~ArwA~~~ei~kagL~~~~GiilG~~-~~~yL~~~--G~eHvLliAPTrSGKGvG~--VIPNLL~ 181 (628)
T PRK13897 107 IKSWRPFKKKEKVHGDARWASEKDIRKAGLRSKKGMLLGKD-KGGYFVAD--GFQHALLFAPTGSGKGVGF--VIPNLLF 181 (628)
T ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEEC-CCCEEEEC--CCCEEEEECCCCCCCCCEE--ECCCCCC
T ss_conf 51157765344566530368877799737878881699852-89858726--8636999788999887279--8312157
Q ss_pred HCCHHHEEEEEECCCC
Q ss_conf 5680110799972342
Q gi|254780606|r 439 RLRPDECRMIMVDPKM 454 (744)
Q Consensus 439 ~~~p~~~~~~liD~k~ 454 (744)
. ++ .++..|+|+
T Consensus 182 w--~~--S~VV~DpKG 193 (628)
T PRK13897 182 W--ED--SVVVHDIKL 193 (628)
T ss_pred C--CC--CEEEEECCH
T ss_conf 9--99--889997767
No 455
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=89.90 E-value=0.2 Score=28.82 Aligned_cols=43 Identities=21% Similarity=0.338 Sum_probs=25.9
Q ss_pred EEEEEEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 6898420578873211201148469970787534479999999
Q gi|254780606|r 392 LALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIM 434 (744)
Q Consensus 392 l~~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~ 434 (744)
|.+..|.-..=+-|-.++.+.==.-+-|=+|+|||+||+||=.
T Consensus 7 l~~~YG~~~AL~~i~~~I~~n~vTAlIGPSGCGKSTlLR~lNR 49 (248)
T TIGR00972 7 LSLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNR 49 (248)
T ss_pred EEEEECCEEEEECCCCEECCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 1266164178621562003770589877889867899999887
No 456
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=89.83 E-value=0.26 Score=28.00 Aligned_cols=30 Identities=37% Similarity=0.654 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC
Q ss_conf 4846997078753447999999999985680110799972
Q gi|254780606|r 412 MPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD 451 (744)
Q Consensus 412 ~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD 451 (744)
|.-++|.|..||||||.|+++ +++-++-+|
T Consensus 1 m~lvIVTGlSGAGKsvAl~~l----------EDlGyycvD 30 (286)
T COG1660 1 MRLVIVTGLSGAGKSVALRVL----------EDLGYYCVD 30 (286)
T ss_pred CCEEEEECCCCCCHHHHHHHH----------HHCCEEEEC
T ss_conf 946999568887688999999----------745804535
No 457
>PRK05480 uridine kinase; Provisional
Probab=89.79 E-value=0.49 Score=26.08 Aligned_cols=33 Identities=33% Similarity=0.464 Sum_probs=22.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC
Q ss_conf 6997078753447999999999985680110799972
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD 451 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD 451 (744)
+.|||.+|||||.+-+.|.-.| ....+.++=.|
T Consensus 9 IgIaG~SgSGKTT~a~~L~~~l----~~~~v~vi~~D 41 (209)
T PRK05480 9 IGIAGGSGSGKTTVASTIYEEL----GDESIAVISQD 41 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHC----CCCCEEEEECC
T ss_conf 9998999778999999999980----86875999554
No 458
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=89.79 E-value=1.1 Score=23.62 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=26.7
Q ss_pred CCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECC
Q ss_conf 1201148469970787534479999999999856801107999723
Q gi|254780606|r 407 ADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDP 452 (744)
Q Consensus 407 ~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~ 452 (744)
+++.+.-=+-+.|.-|||||++++. |++++ +-+.-.+.+.-.|.
T Consensus 21 ~~v~~Gei~gllG~NGaGKSTLl~~-i~Gl~-~p~~G~i~i~G~~~ 64 (208)
T cd03268 21 LHVKKGEIYGFLGPNGAGKTTTMKI-ILGLI-KPDSGEITFDGKSY 64 (208)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHH-HHCCC-CCCCCEEEECCEEC
T ss_conf 6886981999999999999999999-95783-78989999999999
No 459
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=89.78 E-value=1.5 Score=22.81 Aligned_cols=37 Identities=27% Similarity=0.496 Sum_probs=24.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCC
Q ss_conf 469970787534479999999999856801107999723421
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKML 455 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~ 455 (744)
-+-|-|..|||||++|+. |.+++ .|+.=++ .+|-+.+
T Consensus 27 iv~liGpNGaGKSTLlk~-l~Gll---~p~~G~I-~~~g~~i 63 (246)
T cd03237 27 VIGILGPNGIGKTTFIKM-LAGVL---KPDEGDI-EIELDTV 63 (246)
T ss_pred EEEEECCCCCHHHHHHHH-HHCCC---CCCCCEE-EECCCCC
T ss_conf 999997999769999999-97787---8886079-9898205
No 460
>CHL00095 clpC Clp protease ATP binding subunit
Probab=89.78 E-value=1.1 Score=23.65 Aligned_cols=60 Identities=23% Similarity=0.308 Sum_probs=28.8
Q ss_pred EEEEEEECCCCCEEECCHHH--CCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHH---EEEEEEC
Q ss_conf 68984205788732112011--484699707875344799999999998568011---0799972
Q gi|254780606|r 392 LALCLGKTISGESVIADLAN--MPHILVAGTTGSGKSVAINTMIMSLLYRLRPDE---CRMIMVD 451 (744)
Q Consensus 392 l~~~~g~~~~g~~~~~dl~~--~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~---~~~~liD 451 (744)
|--++|+|-+=+-++.=|++ --.-++-|-.|-|||..+..+..-++...-|+. .+++-+|
T Consensus 178 lDpvIGRd~EI~r~i~IL~RR~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLD 242 (823)
T CHL00095 178 LDPVIGRDKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLD 242 (823)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEE
T ss_conf 99875956999999999977324885023799987999999999976088998687599368842
No 461
>KOG0054 consensus
Probab=89.75 E-value=0.21 Score=28.66 Aligned_cols=47 Identities=26% Similarity=0.222 Sum_probs=25.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCC
Q ss_conf 4846997078753447999999999985680110799972342100012
Q gi|254780606|r 412 MPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVY 460 (744)
Q Consensus 412 ~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~ 460 (744)
.-.+=|-|.||||||.+++++.. |.. ..-.++.+--+|-....|...
T Consensus 1166 ~eKVGIVGRTGaGKSSL~~aLFR-l~e-~~~G~I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054 1166 GEKVGIVGRTGAGKSSLILALFR-LVE-PAEGEILIDGVDISKIGLHDL 1212 (1381)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH-CCC-CCCCEEEECCEECCCCCHHHH
T ss_conf 97688868989988999999996-147-658759986865251768899
No 462
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=89.71 E-value=1.4 Score=22.87 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=9.1
Q ss_pred CCCEEEEECCCCCHHHHHH
Q ss_conf 4846997078753447999
Q gi|254780606|r 412 MPHILVAGTTGSGKSVAIN 430 (744)
Q Consensus 412 ~PH~lvaG~TgsGKS~~l~ 430 (744)
.-+.-+.|.-|+|||+||+
T Consensus 29 G~riGLvG~NGaGKSTLLk 47 (530)
T COG0488 29 GERIGLVGRNGAGKSTLLK 47 (530)
T ss_pred CCEEEEECCCCCCHHHHHH
T ss_conf 9889998999898899999
No 463
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=89.70 E-value=0.44 Score=26.43 Aligned_cols=225 Identities=12% Similarity=0.128 Sum_probs=98.8
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEE--CCC----CCCCCEE-EEE-EECHHHHHHH
Q ss_conf 0114846997078753447999999999985680110799972342100--012----5775200-004-4441787689
Q gi|254780606|r 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLEL--SVY----DGIPHLL-TPV-VTNPKKAVMA 480 (744)
Q Consensus 409 l~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~--~~~----~~~ph~~-~~v-~~~~~~~~~~ 480 (744)
+.|.|=.+|.|=-|||||+|||.|+.. ..-..+-+++=||..+.. ... ..+--|- +.+ .+-.......
T Consensus 1 m~~IPVtiltGFLGaGKTTlL~~lL~~----~~~~riaVivNEfGev~iD~~li~~~~~~v~eL~nGCiCCs~~~dl~~~ 76 (317)
T PRK11537 1 MNPIAVTLLTGFLGAGKTTLLRHILNE----QHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDA 76 (317)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHC----CCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEECCCCEEEEECCHHHHH
T ss_conf 997688998308888999999999727----7899789998376145332988735653268844773687305228999
Q ss_pred HHHHHHHHHH-----HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 9999986676-----99999980778679999988642026776665432338679998445687675310358999999
Q gi|254780606|r 481 LKWAVREMEE-----RYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQR 555 (744)
Q Consensus 481 l~~~~~em~~-----r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~ 555 (744)
|..+....++ -|-+..-.|+.+-...-+-+... ......-.|.-+|.|||-..-..... ... + -
T Consensus 77 l~~l~~~~~~~~~~~D~IiIEtsGlAdP~~I~~~~~~~------~~l~~~~~Ld~vVtvVDa~~~~~~l~--~~~--~-~ 145 (317)
T PRK11537 77 LLDLLDNLDRGNIQFDRLVIECTGMADPGPIIQTFFSH------EVLCQRYLLDGVIALVDAVHADEQMN--QFT--I-A 145 (317)
T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH------HHHHHHEECCCEEEEEEHHHHHHHHH--CCH--H-H
T ss_conf 99999866435777547999625778839999998612------56565320365599986655576653--034--6-6
Q ss_pred HHHHHHCCEEEEEEEECCCC-CCCCHHHHH-HCCCCEEEEECCCHHHCCHHCCCCCH---HHHCCCCCEEE-ECCC----
Q ss_conf 99964201358999851654-444146788-50563057203681110032676316---88568984686-4689----
Q gi|254780606|r 556 LAQMARAAGIHLIMATQRPS-VDVITGTIK-ANFPIRISFQVTSKIDSRTILGEHGA---EQLLGRGDMLY-MSGG---- 625 (744)
Q Consensus 556 la~~~ra~GihlilatQrp~-~~vi~~~ik-~n~~~ri~~~v~~~~dsr~il~~~ga---e~l~g~gd~l~-~~~~---- 625 (744)
..|.+-| -+-|+==+..-+ .+.+...|+ -|-.++|.--+...+|...+|+..|. +.+.....-+. ....
T Consensus 146 ~~Qi~~A-D~illnK~Dlv~~~~~l~~~l~~lNp~A~i~~~~~~~v~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~i 224 (317)
T PRK11537 146 QSQVGYA-DRILLTKTDVAGEAEKLRERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIADKQNDI 224 (317)
T ss_pred HHHHHHC-CEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 7666318-689974200236599999999986899848996468789999848787884200167886667777545881
Q ss_pred -CCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf -8438999343898899999999984
Q gi|254780606|r 626 -GRIQRVHGPLVSDIEIEKVVQHLKK 650 (744)
Q Consensus 626 -~~~~r~~~~~~~~~~~~~~~~~~~~ 650 (744)
+-.++..++ ++-..+.+..+.+-.
T Consensus 225 ~s~~~~~~~p-~~~~~~~~~l~~ll~ 249 (317)
T PRK11537 225 SSIVVELDYP-VDISEVSRVMENLLL 249 (317)
T ss_pred EEEEEEECCC-CCHHHHHHHHHHHHH
T ss_conf 7999993898-987999999999987
No 464
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=89.69 E-value=0.35 Score=27.14 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 69970787534479999999999
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
+-|||.+|||||.+-+.|.-.|-
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l~ 24 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 89989897789999999999984
No 465
>KOG0057 consensus
Probab=89.66 E-value=0.37 Score=26.92 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=38.3
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCC
Q ss_conf 2112011484699707875344799999999998568011079997234210001257
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDG 462 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~ 462 (744)
+-+++-+.-.+-|.|..|||||.+||.++.= +. -...+.+--+|-|.+.+.-+++
T Consensus 371 vsf~I~kGekVaIvG~nGsGKSTilr~LlrF--~d-~sG~I~IdG~dik~~~~~SlR~ 425 (591)
T KOG0057 371 VSFTIPKGEKVAIVGSNGSGKSTILRLLLRF--FD-YSGSILIDGQDIKEVSLESLRQ 425 (591)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHHH--HC-CCCCEEECCEEHHHHCHHHHHH
T ss_conf 0588648978989789998788999999997--44-6885999873376507577652
No 466
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=89.60 E-value=1.5 Score=22.72 Aligned_cols=52 Identities=23% Similarity=0.144 Sum_probs=38.9
Q ss_pred CCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECC
Q ss_conf 12011484699707875344799999999998568011079997234210001
Q gi|254780606|r 407 ADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSV 459 (744)
Q Consensus 407 ~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~ 459 (744)
.-+.|.=.++|.|..|.|||+++..|+..... +..+-+-+.+|+-+.-|...
T Consensus 64 ~pigkGQR~~I~~~~g~GKt~ll~~ii~~~~~-~~~~v~V~~~IGer~~ev~~ 115 (274)
T cd01133 64 APYAKGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGYSVFAGVGERTREGND 115 (274)
T ss_pred CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH-CCCCEEEEEEECCCHHHHHH
T ss_conf 66147857787579999823689999999985-08987999984255488999
No 467
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=89.57 E-value=0.31 Score=27.41 Aligned_cols=17 Identities=41% Similarity=0.733 Sum_probs=13.9
Q ss_pred CC-CEEEEECCCCCHHHH
Q ss_conf 48-469970787534479
Q gi|254780606|r 412 MP-HILVAGTTGSGKSVA 428 (744)
Q Consensus 412 ~P-H~lvaG~TgsGKS~~ 428 (744)
-| ++||+|++|.|||++
T Consensus 91 ~pliILigGtsGvGKSTl 108 (306)
T PRK04220 91 EPIIILIGGASGVGTSTI 108 (306)
T ss_pred CCEEEEEECCCCCCHHHH
T ss_conf 987999858998878999
No 468
>PTZ00243 ABC transporter; Provisional
Probab=89.53 E-value=0.24 Score=28.18 Aligned_cols=12 Identities=17% Similarity=0.161 Sum_probs=6.5
Q ss_pred CCHHHHHHHHHH
Q ss_conf 898899999999
Q gi|254780606|r 636 VSDIEIEKVVQH 647 (744)
Q Consensus 636 ~~~~~~~~~~~~ 647 (744)
.+|+||-++.+.
T Consensus 1410 ~sD~eIw~ALe~ 1421 (1560)
T PTZ00243 1410 ASSAEVWAALEL 1421 (1560)
T ss_pred CCHHHHHHHHHH
T ss_conf 999999999998
No 469
>PRK08084 DNA replication initiation factor; Provisional
Probab=89.51 E-value=1 Score=23.96 Aligned_cols=64 Identities=14% Similarity=0.227 Sum_probs=34.4
Q ss_pred EEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCE-EEEEEEECCCCCC--CCHHHHHHCCCCEEEEECCC
Q ss_conf 998445687675310358999999999642013-5899985165444--41467885056305720368
Q gi|254780606|r 532 VIIVDEMADLMMVAGKEIEGAIQRLAQMARAAG-IHLIMATQRPSVD--VITGTIKANFPIRISFQVTS 597 (744)
Q Consensus 532 vvviDE~a~l~~~~~~~~e~~~~~la~~~ra~G-ihlilatQrp~~~--vi~~~ik~n~~~ri~~~v~~ 597 (744)
+|+||.+..+. ...+.|..+-.|--..+..| -+||++..+|-.+ ..-..++.-|.+=..|++..
T Consensus 100 ll~iDDi~~i~--g~~~~ee~lF~l~N~~~~~g~~~ll~ts~~~P~~l~~~l~DL~SRl~~g~~~~i~~ 166 (235)
T PRK08084 100 LVCIDNIECIA--GDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQP 166 (235)
T ss_pred EEEEECHHHHC--CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHCCCEEEECC
T ss_conf 89982745546--99789999999999999848966999679882430231288999995697278559
No 470
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.50 E-value=0.32 Score=27.34 Aligned_cols=41 Identities=32% Similarity=0.564 Sum_probs=27.4
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE
Q ss_conf 211201148469970787534479999999999856801107999
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM 449 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l 449 (744)
+-++..+.--+-|-|..|||||++|++|+ +|+ .|+.=++++
T Consensus 27 v~l~V~~Gei~~iiGgSGsGKStlLr~I~-Gll---~P~~GeI~i 67 (263)
T COG1127 27 VDLDVPRGEILAILGGSGSGKSTLLRLIL-GLL---RPDKGEILI 67 (263)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHH-CCC---CCCCCEEEE
T ss_conf 31355078189998898868999999985-657---898875998
No 471
>KOG1532 consensus
Probab=89.46 E-value=0.39 Score=26.75 Aligned_cols=45 Identities=29% Similarity=0.414 Sum_probs=31.7
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEE
Q ss_conf 14846997078753447999999999985680110799972342100
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLEL 457 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~ 457 (744)
+-+-+||-|+-||||+.|++-+...|-.+..|- -.+=.||-..+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~pp--YviNLDPAv~~v 62 (366)
T KOG1532 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPP--YVINLDPAVRNV 62 (366)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCC--EEEECCHHHHCC
T ss_conf 870799994477884139999999986236998--088678888548
No 472
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=89.43 E-value=0.12 Score=30.22 Aligned_cols=40 Identities=30% Similarity=0.360 Sum_probs=22.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCC
Q ss_conf 69970787534479999999999856801107999723421
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKML 455 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~ 455 (744)
++|=-+||||||..+- .+..+|+...-..--|+++|=+.+
T Consensus 276 G~IWHtqGSGKTltm~-~~A~~l~~~~~~~~v~fvvDR~dL 315 (962)
T COG0610 276 GYIWHTQGSGKTLTMF-KLARLLLELPKNPKVLFVVDRKDL 315 (962)
T ss_pred EEEEECCCCCHHHHHH-HHHHHHHHCCCCCEEEEEECHHHH
T ss_conf 3898406983789999-999999836599969999672889
No 473
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=89.42 E-value=0.43 Score=26.47 Aligned_cols=54 Identities=24% Similarity=0.356 Sum_probs=31.7
Q ss_pred EEEEEEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEE
Q ss_conf 68984205788732112011484699707875344799999999998568011079
Q gi|254780606|r 392 LALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRM 447 (744)
Q Consensus 392 l~~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~ 447 (744)
|.+..|...-=+-+-+++.+.-.+.+-|..|||||++++. |++++. ..--++.+
T Consensus 5 ls~~yg~~~~L~~is~~i~~Ge~~~liGpNGaGKSTllk~-i~Gl~~-p~~G~i~i 58 (213)
T cd03235 5 LTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKA-ILGLLK-PTSGSIRV 58 (213)
T ss_pred EEEEECCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHH-HHCCCC-CCCCEEEE
T ss_conf 6999999998850278985998999999999869999999-976878-89758999
No 474
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=89.41 E-value=0.26 Score=28.04 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=19.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 69970787534479999999999
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
+|+.|..|+|||.+|+.+..+-.
T Consensus 2 i~ilG~~~vGKTsll~~l~~~~~ 24 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGEV 24 (158)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999988999999953998
No 475
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=89.39 E-value=0.62 Score=25.39 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=24.8
Q ss_pred EEEEEEECCCCCEEECCHHH--CCCEEEEECCCCCHHHHHHHHHHHHHHHCCHH
Q ss_conf 68984205788732112011--48469970787534479999999999856801
Q gi|254780606|r 392 LALCLGKTISGESVIADLAN--MPHILVAGTTGSGKSVAINTMIMSLLYRLRPD 443 (744)
Q Consensus 392 l~~~~g~~~~g~~~~~dl~~--~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~ 443 (744)
|--.+|+|.+=+-++.=|++ -...++.|-.|-|||..+..+..-++...-|+
T Consensus 172 lDpviGRd~Ei~r~i~IL~Rr~KNNpiLVGepGVGKTAIvEGLA~rI~~g~VP~ 225 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPE 225 (852)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCH
T ss_conf 997738369999999999873248972127999879999999999986699997
No 476
>PRK06696 uridine kinase; Validated
Probab=89.38 E-value=0.54 Score=25.80 Aligned_cols=37 Identities=30% Similarity=0.352 Sum_probs=24.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECC
Q ss_conf 69970787534479999999999856801107999723
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDP 452 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~ 452 (744)
+-|+|.+|||||.|-+.|...|-.+..+ -+.+.|=||
T Consensus 29 VgIdG~~gSGKTTlA~~La~~L~~~G~~-V~~v~~Ddf 65 (227)
T PRK06696 29 VAIDGITASGKTTFANELAEEIKKRGRP-VIRASIDDF 65 (227)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCC-EEEECCCCC
T ss_conf 9977899878799999999999746994-899715443
No 477
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=89.35 E-value=0.51 Score=25.96 Aligned_cols=37 Identities=35% Similarity=0.537 Sum_probs=30.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 699707875344799999999998568011079997234
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK 453 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k 453 (744)
+=|-|..|+|||.++-.+++-| +..-..|-++-|||.
T Consensus 54 iGITG~PGaGKSTli~~L~~~l--~~~G~rVaVlAVDPS 90 (323)
T COG1703 54 IGITGVPGAGKSTLIEALGREL--RERGHRVAVLAVDPS 90 (323)
T ss_pred EEECCCCCCCHHHHHHHHHHHH--HHCCCEEEEEEECCC
T ss_conf 8731799886688999999999--977967899998899
No 478
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=89.33 E-value=0.69 Score=25.08 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=26.1
Q ss_pred EEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCC
Q ss_conf 9984456876753103589999999996420135899985165444
Q gi|254780606|r 532 VIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVD 577 (744)
Q Consensus 532 vvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~ 577 (744)
+++||.+..+. ..+..|..+-.|--.-...|-++|++.-++-.+
T Consensus 93 ~l~iDDi~~i~--~~~~~e~~lF~l~N~~~~~~~~ilits~~~p~~ 136 (226)
T TIGR03420 93 LVCLDDVEAIA--GQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQ 136 (226)
T ss_pred EEEEECHHHHC--CCHHHHHHHHHHHHHHHHHCCEEEEECCCCHHH
T ss_conf 99996633343--783789999999999986528289867888232
No 479
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=89.30 E-value=0.36 Score=27.05 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=23.2
Q ss_pred EECCHHHCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 21120114846997078753447999999
Q gi|254780606|r 405 VIADLANMPHILVAGTTGSGKSVAINTMI 433 (744)
Q Consensus 405 ~~~dl~~~PH~lvaG~TgsGKS~~l~~~i 433 (744)
+-+++.+.-.+.|.|..|||||++++.++
T Consensus 14 isl~i~~Ge~~~iiG~nGsGKSTLl~~~~ 42 (176)
T cd03238 14 LDVSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 48788899899999999998999999888
No 480
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=89.30 E-value=0.41 Score=26.62 Aligned_cols=18 Identities=28% Similarity=0.599 Sum_probs=7.6
Q ss_pred CCEEEEECCCCCHHHHHH
Q ss_conf 846997078753447999
Q gi|254780606|r 413 PHILVAGTTGSGKSVAIN 430 (744)
Q Consensus 413 PH~lvaG~TgsGKS~~l~ 430 (744)
-++.|.|..|||||++++
T Consensus 30 e~vgLVG~NGsGKSTLl~ 47 (632)
T PRK11147 30 ERVCLVGRNGAGKSTLMK 47 (632)
T ss_pred CEEEEECCCCCHHHHHHH
T ss_conf 899999999987999999
No 481
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein; InterPro: IPR013505 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=89.29 E-value=0.31 Score=27.46 Aligned_cols=155 Identities=19% Similarity=0.262 Sum_probs=78.7
Q ss_pred EEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCC---CEE--------CCCCCCCCEE-EEEE
Q ss_conf 321120114846997078753447999999999985680110799972342---100--------0125775200-0044
Q gi|254780606|r 404 SVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKM---LEL--------SVYDGIPHLL-TPVV 471 (744)
Q Consensus 404 ~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~---~~~--------~~~~~~ph~~-~~v~ 471 (744)
-+-+.+.|.--+-+.|-.|||||+||+ +|+++ .+-+--+++|--.|-.. -+- ..|++..-|. --|+
T Consensus 21 ~~~~~~~kGem~fL~GHSGaGKST~lk-Li~~~-~~P~~G~i~~~G~d~~~L~~r~~P~LRr~iG~VFQD~~LL~drtv~ 98 (216)
T TIGR00960 21 NVTFHIDKGEMVFLVGHSGAGKSTLLK-LILGI-EKPTRGKIRFSGQDLTRLRGREVPFLRRHIGMVFQDHRLLSDRTVY 98 (216)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHH-HHHHH-CCCCCCEEEECCCCCCCCCCCCCCCEEEECCEEECCHHHHHHCCHH
T ss_conf 864785385079985688860789999-99852-2899860787154210015774673000104267011553116554
Q ss_pred ECHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCHHHHH---------HHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHH
Q ss_conf 441787689999998667699-999980778679999---------9886420267766654323386799984456876
Q gi|254780606|r 472 TNPKKAVMALKWAVREMEERY-RKMSHLSVRNIKSYN---------ERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADL 541 (744)
Q Consensus 472 ~~~~~~~~~l~~~~~em~~r~-~~~~~~~~~~i~~~n---------~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l 541 (744)
.|.--+......--++.++|- .-+.+.|-++-+.+- +|+...++.-. -|. |++-||=.-
T Consensus 99 dNVa~pL~iiG~~~~~~~~rv~~aL~~VGL~~K~~~lP~~LSGGEQQRv~IARA~V~---------~P~-lLLADEPTG- 167 (216)
T TIGR00960 99 DNVALPLRIIGVPGRDINERVSAALEKVGLKGKAHALPVQLSGGEQQRVAIARAVVN---------KPA-LLLADEPTG- 167 (216)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHCC---------CCC-CEEEECCCC-
T ss_conf 552433552289974267899999873061121240762004850345566444306---------797-013108898-
Q ss_pred HHHCCHHHHHHHHHHHHHHHCCEEEEEEEECC
Q ss_conf 75310358999999999642013589998516
Q gi|254780606|r 542 MMVAGKEIEGAIQRLAQMARAAGIHLIMATQR 573 (744)
Q Consensus 542 ~~~~~~~~e~~~~~la~~~ra~GihlilatQr 573 (744)
...++.-.-|.+|-+.=--+|+=+|+||--
T Consensus 168 --NLD~~~S~~il~Lf~~~n~~G~TVl~ATHD 197 (216)
T TIGR00960 168 --NLDPELSRDILRLFEEFNRAGTTVLVATHD 197 (216)
T ss_pred --CCCHHHHHHHHHHHHHHHCCCCEEEECCCH
T ss_conf --878888999999998750378547771024
No 482
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=89.26 E-value=0.54 Score=25.81 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=25.7
Q ss_pred CCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHH--EEEEEECC
Q ss_conf 12011484699707875344799999999998568011--07999723
Q gi|254780606|r 407 ADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDE--CRMIMVDP 452 (744)
Q Consensus 407 ~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~--~~~~liD~ 452 (744)
+++.+.-=+-+.|.-|||||++++. |++++ .|+. +.+.-.|.
T Consensus 26 ~~i~~Gei~gllG~NGaGKSTllk~-i~Gl~---~p~~G~i~i~G~d~ 69 (218)
T cd03266 26 FTVKPGEVTGLLGPNGAGKTTTLRM-LAGLL---EPDAGFATVDGFDV 69 (218)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHH-HHCCC---CCCCCEEEECCEEC
T ss_conf 8985982999999999849999999-97797---78974899999998
No 483
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=89.26 E-value=1.6 Score=22.56 Aligned_cols=199 Identities=18% Similarity=0.231 Sum_probs=93.7
Q ss_pred CEEEEEEECCCC-----CEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCC-HHHEEEEEECCC------C----
Q ss_conf 368984205788-----732112011484699707875344799999999998568-011079997234------2----
Q gi|254780606|r 391 NLALCLGKTISG-----ESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLR-PDECRMIMVDPK------M---- 454 (744)
Q Consensus 391 ~l~~~~g~~~~g-----~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~-p~~~~~~liD~k------~---- 454 (744)
.|.+-.+.+ .| +-+-+++.+.--+-|.|.+|||||++.++ |++|+-.+. ...=++ ++|-+ .
T Consensus 10 nL~v~~~~~-~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~-i~gll~~~~~~~~G~I-~~~g~dl~~l~~~~~r 86 (539)
T COG1123 10 NLTVEFATD-GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALA-LMGLLPEGGRITSGEV-ILDGRDLLGLSEREMR 86 (539)
T ss_pred CEEEEEECC-CCCEEEEECCEEEECCCCEEEEECCCCCCHHHHHHH-HHCCCCCCCCCCCEEE-EECCCCHHCCCHHHHH
T ss_conf 408997538-862244424247864895899986898888999999-8554888786444189-9878023217877898
Q ss_pred ----CEEC-CCCCCCCEEEEEEECHHHHHHHHHHH----HHHHHH-HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCC--
Q ss_conf ----1000-12577520000444417876899999----986676-99999980778679999988642026776665--
Q gi|254780606|r 455 ----LELS-VYDGIPHLLTPVVTNPKKAVMALKWA----VREMEE-RYRKMSHLSVRNIKSYNERISTMYGEKPQGCG-- 522 (744)
Q Consensus 455 ----~~~~-~~~~~ph~~~~v~~~~~~~~~~l~~~----~~em~~-r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~-- 522 (744)
-..+ .|++--..+.|+.+=-+....++..- ..|+.+ -.++|...|..+-... ..+...-..|
T Consensus 87 ~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~------~~yPheLSGG~r 160 (539)
T COG1123 87 KLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR------DRYPHQLSGGMR 160 (539)
T ss_pred HHCCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHH------CCCCCCCCCHHH
T ss_conf 74164089996686355496313999999999973565599999999999997299982554------248722670499
Q ss_pred ------CCCCCCCEEEEEHHHHHHHHH-HCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEE--
Q ss_conf ------432338679998445687675-31035899999999964201358999851654444146788505630572--
Q gi|254780606|r 523 ------DDMRPMPYIVIIVDEMADLMM-VAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISF-- 593 (744)
Q Consensus 523 ------~~~~~~p~ivvviDE~a~l~~-~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~-- 593 (744)
.-+..-|. ++|.||=.--.. +...++-++ |...-+..||-+|+-|--+. +-+++.-||..
T Consensus 161 QRv~iAmALa~~P~-LLIaDEPTTaLDvt~q~qIL~l---lk~l~~e~g~a~l~ITHDl~-------Vva~~aDrv~Vm~ 229 (539)
T COG1123 161 QRVMIAMALALKPK-LLIADEPTTALDVTTQAQILDL---LKDLQRELGMAVLFITHDLG-------VVAELADRVVVMY 229 (539)
T ss_pred HHHHHHHHHHCCCC-EEEECCCCCCCCHHHHHHHHHH---HHHHHHHCCCEEEEECCCHH-------HHHHHCCEEEEEE
T ss_conf 99999999837999-8997798541089999999999---99999970948999868999-------9997537699998
Q ss_pred --ECCCHHHCCHHCCCCC
Q ss_conf --0368111003267631
Q gi|254780606|r 594 --QVTSKIDSRTILGEHG 609 (744)
Q Consensus 594 --~v~~~~dsr~il~~~g 609 (744)
++-...+.+.|+..+.
T Consensus 230 ~G~iVE~G~~~~i~~~p~ 247 (539)
T COG1123 230 KGEIVETGPTEEILSNPQ 247 (539)
T ss_pred CCEEEEECCHHHHHHCCC
T ss_conf 878887468999972668
No 484
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=89.15 E-value=0.23 Score=28.33 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=22.8
Q ss_pred HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHE
Q ss_conf 114846997078753447999999999985680110
Q gi|254780606|r 410 ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDEC 445 (744)
Q Consensus 410 ~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~ 445 (744)
.+.-=+-|-|-.|+|||++|+| |=-|.--..|..=
T Consensus 26 ~~GE~~~~IG~SGAGKSTLLR~-iNrL~~Gdk~~~G 60 (253)
T TIGR02315 26 NPGEFVAVIGPSGAGKSTLLRC-INRLVEGDKPSSG 60 (253)
T ss_pred ECCEEEEEECCCCCCHHHHHHH-HHHHCCCCCCCCC
T ss_conf 1651799973788726799987-7530268888765
No 485
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=89.01 E-value=0.72 Score=24.95 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=28.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCC
Q ss_conf 8469970787534479999999999856801107999723421
Q gi|254780606|r 413 PHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKML 455 (744)
Q Consensus 413 PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~ 455 (744)
|=.+|.|-=|||||.||+.++... ..-..+-++.-|+...
T Consensus 1 Pv~iitGFLGsGKTTll~~ll~~~---~~~~~~avI~Ne~g~~ 40 (174)
T pfam02492 1 PVTVLTGFLGSGKTTLLEHLLRDN---REGLKIAVIVNDFGET 40 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHC---CCCCCEEEEEECCCCH
T ss_conf 969993488788999999999844---4898479999336530
No 486
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.93 E-value=1.7 Score=22.40 Aligned_cols=149 Identities=20% Similarity=0.352 Sum_probs=76.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC--------CCEECCCCCCCCEEEEEEECHHHHHHHHHHHH
Q ss_conf 4699707875344799999999998568011079997234--------21000125775200004444178768999999
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK--------MLELSVYDGIPHLLTPVVTNPKKAVMALKWAV 485 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k--------~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~ 485 (744)
-+||-|--|.|||++.+-+..++|.. ..+...+--- ..+---|.-.+|+.....-=..-...-+.|..
T Consensus 30 L~lIEGd~~tGKSvLsqr~~YG~L~~----g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~~ 105 (235)
T COG2874 30 LILIEGDNGTGKSVLSQRFAYGFLMN----GYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWGR 105 (235)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC----CCEEEEEEECHHHHHHHHHHHHCCCCCHHHHHCCEEEEEEECCCCCCCCH
T ss_conf 99998889854889999999988708----95489998403599999988863887168775062689993245422573
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC-HHHHHH---HHHHHHHHH
Q ss_conf 8667699999980778679999988642026776665432338679998445687675310-358999---999999642
Q gi|254780606|r 486 REMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAG-KEIEGA---IQRLAQMAR 561 (744)
Q Consensus 486 ~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~-~~~e~~---~~~la~~~r 561 (744)
+.|+...+++.+. +..+ -+=|||||-|.-++.... +.+-.. +..|.-.|+
T Consensus 106 ~~~~~~L~~l~~~----~k~~----------------------~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gK 159 (235)
T COG2874 106 RSARKLLDLLLEF----IKRW----------------------EKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGK 159 (235)
T ss_pred HHHHHHHHHHHHH----HHHH----------------------CCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 7789999999755----7752----------------------3778999534377652649999999999999872897
Q ss_pred CCEEEEEEEECCCCC--CCCHHHHHHCCCCEEEEECCC
Q ss_conf 013589998516544--441467885056305720368
Q gi|254780606|r 562 AAGIHLIMATQRPSV--DVITGTIKANFPIRISFQVTS 597 (744)
Q Consensus 562 a~GihlilatQrp~~--~vi~~~ik~n~~~ri~~~v~~ 597 (744)
+|+.|=.|++ +-+...|++-..+-+-|+..+
T Consensus 160 -----vIilTvhp~~l~e~~~~rirs~~d~~l~L~~~~ 192 (235)
T COG2874 160 -----VIILTVHPSALDEDVLTRIRSACDVYLRLRLEE 192 (235)
T ss_pred -----EEEEEECHHHCCHHHHHHHHHHHHEEEEEEHHH
T ss_conf -----899994734337899999987520258987023
No 487
>PRK08903 hypothetical protein; Validated
Probab=88.91 E-value=1.7 Score=22.40 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=19.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 846997078753447999999999
Q gi|254780606|r 413 PHILVAGTTGSGKSVAINTMIMSL 436 (744)
Q Consensus 413 PH~lvaG~TgsGKS~~l~~~i~sl 436 (744)
+++.|.|.+|+|||-+|+++.-..
T Consensus 43 ~~l~i~G~~G~GKTHLl~a~~~~~ 66 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVAAA 66 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 669998999998889999999999
No 488
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=88.90 E-value=1.6 Score=22.63 Aligned_cols=153 Identities=19% Similarity=0.227 Sum_probs=68.5
Q ss_pred HHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCE-----------EEEECCCCEEEEECC
Q ss_conf 987403551389867648925899975488863999985999999871477632-----------775189834544268
Q gi|254780606|r 299 TILEEFGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVIGLADDIARSMSSLSAR-----------VAVIPKRNAIGIELP 367 (744)
Q Consensus 299 ~~l~~~~~~~~~~~~~~gp~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~~~~~-----------~~~~pg~~~~~~~~p 367 (744)
.+|++.=-.+++-++ |=|...+||-- ++.+.=||.+|--..-. ..-.-|...=.||+-
T Consensus 26 ~~L~n~i~~~~i~ha--------yLf~GprG~GK---Ts~Ari~akalnc~~~~~~~pC~~C~~C~~i~~g~~~Dv~Eid 94 (541)
T PRK05563 26 TTLKNQIINNRIAHA--------YLFCGTRGTGK---TSTAKIFAKAVNCLNPQDGEPCNECEICKKINEGLLMDVIEID 94 (541)
T ss_pred HHHHHHHHCCCCCEE--------EEEECCCCCCH---HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEC
T ss_conf 999999984993204--------53038799589---9999999999579998889857514889998568988736624
Q ss_pred C-CCCCEEEHHHHHCCHHHCCCCCCEEEEEEECCCCCEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEE
Q ss_conf 8-888707658751281211467836898420578873211201148469970787534479999999999856801107
Q gi|254780606|r 368 N-ETRETVYLRQIIESRSFSHSKANLALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECR 446 (744)
Q Consensus 368 ~-~~~~~v~~~~~~~~~~~~~~~~~l~~~~g~~~~g~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~ 446 (744)
- .++..=..|++++.-.|..+.++ -+.++.|- .|+| |. ..-|+++-. +--+|.++.
T Consensus 95 aas~~gvd~iR~~~~~~~~~p~~~~----------~Kv~IiDE---vhml----s~----~a~nallKt--lEePp~~~~ 151 (541)
T PRK05563 95 AASNNGVDDIREIIENVKYPPQEGK----------YKVYIMDE---VHML----SQ----GAVNAFLKT--LEEPPSNVI 151 (541)
T ss_pred CCCCCCHHHHHHHHHHCEECCCCCC----------EEEEEEEC---CCCC----CH----HHHHHHHHH--HHCCCCCCE
T ss_conf 4444788999999976104876787----------05999977---2338----99----999999999--854877756
Q ss_pred EEEEC--CCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHH
Q ss_conf 99972--34210001257752000044441787689999998
Q gi|254780606|r 447 MIMVD--PKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVR 486 (744)
Q Consensus 447 ~~liD--~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~ 486 (744)
|+|+- |..+--+....+-+. ..---+.......|++.+.
T Consensus 152 Filatte~~ki~~tI~SRcq~f-~f~~i~~~~i~~~L~~I~~ 192 (541)
T PRK05563 152 FILATTDPQKLPITILSRCQRF-DFKRIKVKDIFKRLRKIVE 192 (541)
T ss_pred EEEECCCCCCCCHHHHHHEEEE-EEEECCHHHHHHHHHHHHH
T ss_conf 9997698442745567421357-7543899999999999999
No 489
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=88.81 E-value=0.45 Score=26.32 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=23.2
Q ss_pred CEEECCHHHCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 73211201148469970787534479999999999
Q gi|254780606|r 403 ESVIADLANMPHILVAGTTGSGKSVAINTMIMSLL 437 (744)
Q Consensus 403 ~~~~~dl~~~PH~lvaG~TgsGKS~~l~~~i~sl~ 437 (744)
+-+-+++.+.=.+-|.|..|||||++++. |++++
T Consensus 269 ~~vs~~v~~GEi~gi~G~nGsGKsTL~~~-l~Gl~ 302 (501)
T PRK10762 269 NDVSFTLRKGEILGVSGLMGAGRTELMKV-LYGAL 302 (501)
T ss_pred CCEEEEECCCCEEEEECCCCCCHHHHHHH-HHCCC
T ss_conf 63444766881899667888768899999-81876
No 490
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=88.81 E-value=1.7 Score=22.35 Aligned_cols=30 Identities=7% Similarity=0.020 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHHHCCHHHEEEEEECC
Q ss_conf 534479999999999856801107999723
Q gi|254780606|r 423 SGKSVAINTMIMSLLYRLRPDECRMIMVDP 452 (744)
Q Consensus 423 sGKS~~l~~~i~sl~~~~~p~~~~~~liD~ 452 (744)
++-+..++..|...++...+--+-|++-+.
T Consensus 142 ~~d~~~fr~~L~~~L~s~~~~PlV~IiSEt 171 (490)
T pfam03215 142 YSDAEKFREVIREVLQSIWHLPLIFCLTEC 171 (490)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 236699999999999708999879999704
No 491
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=88.66 E-value=0.52 Score=25.91 Aligned_cols=48 Identities=19% Similarity=0.408 Sum_probs=31.7
Q ss_pred EEECCCCCEEECCH----HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEE
Q ss_conf 42057887321120----11484699707875344799999999998568011079
Q gi|254780606|r 396 LGKTISGESVIADL----ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRM 447 (744)
Q Consensus 396 ~g~~~~g~~~~~dl----~~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~ 447 (744)
|.+..++++++-|+ .+.=-+.+.|..|+|||++++. |++++ .|+.=++
T Consensus 7 ls~~y~~~~vl~~is~~i~~G~i~~l~G~NGaGKSTLlkl-i~Gl~---~p~~G~I 58 (200)
T PRK13540 7 LDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKL-IAGLL---NPEKGEI 58 (200)
T ss_pred EEEEECCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHH-HHCCC---CCCCCEE
T ss_conf 9999999998812278987997999988999879999999-97785---8898569
No 492
>TIGR02857 CydD ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; InterPro: IPR014216 The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain and a C-terminal ATP-binding domain. In Escherichia coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in the export of redox-active thiol compounds such as cysteine and glutathione , . The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this entry are all either found in the gammaproteobacterial context, or the CydABCD context. All members of this entry scoring above the trusted cut off at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature, based on this operon in Bacillus subtilis, assigns cydC to the third gene in the operon, where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologues in this family in accordance with the precedence of publication of the E. coli name, CydD..
Probab=88.63 E-value=0.37 Score=26.95 Aligned_cols=35 Identities=23% Similarity=0.548 Sum_probs=25.7
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEE
Q ss_conf 148469970787534479999999999856801107999
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM 449 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~l 449 (744)
-.-++-+.|..|+|||++||. +++++ .|++=.+.+
T Consensus 377 pG~~vAl~G~SGaGKSTLL~l-LLGf~---~P~~G~i~v 411 (570)
T TIGR02857 377 PGERVALVGPSGAGKSTLLNL-LLGFV---EPTEGAIVV 411 (570)
T ss_pred CCCEEEEEECCCCCHHHHHHH-HHCCC---CCCCCEEEE
T ss_conf 870488862799978899999-97157---644646887
No 493
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=88.61 E-value=1.8 Score=22.26 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=25.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEEC
Q ss_conf 846997078753447999999999985680110799972
Q gi|254780606|r 413 PHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD 451 (744)
Q Consensus 413 PH~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD 451 (744)
--.-+-|--|+|||++|+ ||.+|| .|+.=+.++..
T Consensus 29 ei~GlLG~NGAGKTT~LR-miatlL---~P~~G~v~idg 63 (245)
T COG4555 29 EITGLLGENGAGKTTLLR-MIATLL---IPDSGKVTIDG 63 (245)
T ss_pred EEEEEECCCCCCCHHHHH-HHHHHC---CCCCCEEEEEE
T ss_conf 499987689887123799-999832---58886499840
No 494
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=88.58 E-value=1.1 Score=23.58 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=27.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 699707875344799999999998568011079997234
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK 453 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k 453 (744)
+|.-|-.|||||.+++.|...|=..-+-++=.++-+...
T Consensus 81 llL~GPvGsGKStl~~~Lk~~lE~ys~t~eG~~Y~~~w~ 119 (361)
T smart00763 81 LYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWN 119 (361)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 999889988779999999999998626776855999833
No 495
>PRK06217 hypothetical protein; Validated
Probab=88.57 E-value=0.48 Score=26.17 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=20.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 4846997078753447999999999
Q gi|254780606|r 412 MPHILVAGTTGSGKSVAINTMIMSL 436 (744)
Q Consensus 412 ~PH~lvaG~TgsGKS~~l~~~i~sl 436 (744)
|-+++|.|..|||||++-+.+-..|
T Consensus 1 m~rI~i~G~sGsGkSTla~~La~~l 25 (185)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAEAL 25 (185)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9679997899887899999999975
No 496
>PRK08118 topology modulation protein; Reviewed
Probab=88.53 E-value=0.38 Score=26.88 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=18.2
Q ss_pred CCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 48469970787534479999999
Q gi|254780606|r 412 MPHILVAGTTGSGKSVAINTMIM 434 (744)
Q Consensus 412 ~PH~lvaG~TgsGKS~~l~~~i~ 434 (744)
|--++|.|.+|||||+|=+.|-.
T Consensus 1 M~rI~IiG~~GsGKSTlAr~L~~ 23 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 96799988999879999999999
No 497
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=88.49 E-value=0.4 Score=26.71 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=22.3
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 148469970787534479999999
Q gi|254780606|r 411 NMPHILVAGTTGSGKSVAINTMIM 434 (744)
Q Consensus 411 ~~PH~lvaG~TgsGKS~~l~~~i~ 434 (744)
+.|++-|.|...+|||.++|+|+-
T Consensus 17 ~~p~IaivGrpNvGKSTL~N~L~g 40 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTN 40 (179)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 897899986999888999999868
No 498
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=88.45 E-value=0.32 Score=27.34 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=16.1
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCHH
Q ss_conf 469970787534479999999999856801
Q gi|254780606|r 414 HILVAGTTGSGKSVAINTMIMSLLYRLRPD 443 (744)
Q Consensus 414 H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~ 443 (744)
-..+.|-||+|||+.|-+|-+-|=.+.+.+
T Consensus 24 ltVlTGETGAGKSIiidAl~lllG~ra~~~ 53 (557)
T COG0497 24 LTVLTGETGAGKSIIIDALGLLLGGRADAS 53 (557)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 568656888756679989999727877811
No 499
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=88.44 E-value=0.55 Score=25.77 Aligned_cols=38 Identities=24% Similarity=0.467 Sum_probs=0.0
Q ss_pred EEECCCCCEEECCHH----HCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 420578873211201----14846997078753447999999
Q gi|254780606|r 396 LGKTISGESVIADLA----NMPHILVAGTTGSGKSVAINTMI 433 (744)
Q Consensus 396 ~g~~~~g~~~~~dl~----~~PH~lvaG~TgsGKS~~l~~~i 433 (744)
|-+.-.|+.++-|+. +.--+-+.|..|||||++++.|.
T Consensus 9 ls~~y~~~~~l~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~ 50 (241)
T PRK10895 9 LAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVV 50 (241)
T ss_pred EEEEECCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 899999999995207898399799998899986999999996
No 500
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=88.43 E-value=0.42 Score=26.53 Aligned_cols=18 Identities=22% Similarity=0.073 Sum_probs=9.6
Q ss_pred HHHHHHHHHCCCCEEEEE
Q ss_conf 999998740355138986
Q gi|254780606|r 295 GSLETILEEFGIKGEIIN 312 (744)
Q Consensus 295 ~~l~~~l~~~~~~~~~~~ 312 (744)
..|++.|++|+...-+|.
T Consensus 186 ~~L~~~L~~~~gtvilVS 203 (638)
T PRK10636 186 IWLEKWLKSYQGTLILIS 203 (638)
T ss_pred HHHHHHHHHCCCEEEEEE
T ss_conf 999999997698199996
Done!