HHsearch alignment for GI: 254780606 and conserved domain: pfam02456
>pfam02456 Adeno_IVa2 Adenovirus IVa2 protein. IVa2 protein can interact with the adenoviral packaging signal and that this interaction involves DNA sequences that have previously been demonstrated to be required for packaging. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter.
Probab=95.54 E-value=0.0098 Score=37.74 Aligned_cols=40 Identities=28% Similarity=0.373 Sum_probs=31.0
Q ss_pred HHHCC-CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEE
Q ss_conf 01148-46997078753447999999999985680110799
Q gi|254780606|r 409 LANMP-HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMI 448 (744)
Q Consensus 409 l~~~P-H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~ 448 (744)
T Consensus 83 y~~qP~I~vVYGPTG~GKSQLlRNlis~~lI~P~PETVfFI 123 (370)
T pfam02456 83 YGLQPVIGVVYGPTGCGKSQLLRNLLSCQLIQPIPETVFFI 123 (370)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 67874499998899877899999987346677999728997