HHsearch alignment for GI: 254780606 and conserved domain: pfam04665
>pfam04665 Pox_A32 Poxvirus A32 protein. The A32 protein is thought to be involved in viral DNA packaging.
Probab=97.44 E-value=0.0024 Score=41.99 Aligned_cols=150 Identities=18% Similarity=0.320 Sum_probs=90.2
Q ss_pred CHHHCC-CEEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCC-CCEECCCCCCCCEEEEEEECHHHHHHHHHHHH
Q ss_conf 201148-4699707875344799999999998568011079997234-21000125775200004444178768999999
Q gi|254780606|r 408 DLANMP-HILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPK-MLELSVYDGIPHLLTPVVTNPKKAVMALKWAV 485 (744)
Q Consensus 408 dl~~~P-H~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k-~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~ 485 (744)
T Consensus 8 sLl~~pFrmaivGgSGSGKT~yLlsLf~tlv~kyk----hIfLfTpv~N~~Yd~Y-VwPdHV~~-vtt~eeleY~L~--- 78 (241)
T pfam04665 8 SLLAAPFRMAIVGGSGSGKTTYLLSLLRTLVRKFK----HIFLFTPVYNNAYDGY-VWPDHIFK-VTTNEELEYALS--- 78 (241)
T ss_pred HHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHE----EEEEECCCCCCCCCCC-CCCCCEEE-ECCHHHHHHHHH---
T ss_conf 67408735999815887566999999999977415----8999624467323652-57773256-257235778999---
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEE
Q ss_conf 86676999999807786799999886420267766654323386799984456876753103589999999996420135
Q gi|254780606|r 486 REMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGI 565 (744)
Q Consensus 486 ~em~~r~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~Gi 565 (744)
T Consensus 79 -~~k~k-----------Iek~~~~~~~~-----k-------~~~~fLiIlDD~Gd~q~rs-----~~L~~f~N~gRH~n~ 129 (241)
T pfam04665 79 -KTKEK-----------IEKFSKKASNQ-----K-------ENFRFLIILDDLGDMQTRS-----KTLLNFTNHGRHLNI 129 (241)
T ss_pred -HHHHH-----------HHHHHHHCCCC-----C-------CCEEEEEEECCCCCHHHHH-----HHHHHHHCCCCCHHH
T ss_conf -99999-----------99999860266-----6-------4104899962555323311-----577766401610101
Q ss_pred EEEEEECCCCCCCCHHHHHHCCCCEEEEECCC
Q ss_conf 89998516544441467885056305720368
Q gi|254780606|r 566 HLIMATQRPSVDVITGTIKANFPIRISFQVTS 597 (744)
Q Consensus 566 hlilatQrp~~~vi~~~ik~n~~~ri~~~v~~ 597 (744)
T Consensus 130 Sii~Lcqty~--Hvp~n~R~Sith~cccNvs~ 159 (241)
T pfam04665 130 SIILLCQTYK--HVPVNGRDSITHFCCCNVSD 159 (241)
T ss_pred EEEEEEEEEE--CCCCCCCCCCEEEEEECCCH
T ss_conf 1134442211--04998743204899831546