HHsearch alignment for GI: 254780606 and conserved domain: pfam07693
>pfam07693 KAP_NTPase KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.
Probab=96.04 E-value=0.043 Score=33.35 Aligned_cols=88 Identities=17% Similarity=0.230 Sum_probs=54.7
Q ss_pred EEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHCCCCEEEEECCCHHHCCHHCCCCC
Q ss_conf 79998445687675310358999999999642013589998516544441467885056305720368111003267631
Q gi|254780606|r 530 YIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSKIDSRTILGEHG 609 (744)
Q Consensus 530 ~ivvviDE~a~l~~~~~~~~e~~~~~la~~~ra~GihlilatQrp~~~vi~~~ik~n~~~ri~~~v~~~~dsr~il~~~g 609 (744)
T Consensus 161 ~iVviIDDLDRc---~p~~~v~~Le~Ik~~~d~~n~vfVLa~D~---~~v~~al~~~~~~~---------------~~~~ 219 (301)
T pfam07693 161 RIVVIIDDLDRC---EPEEAVELLEAVRLLFDFPNVVFILAYDE---EIIKKAIEHNYGGG---------------EIDG 219 (301)
T ss_pred CEEEEECCCCCC---CHHHHHHHHHHHHHHHCCCCEEEEEECCH---HHHHHHHHHHCCCC---------------CCCH
T ss_conf 789997365548---87899999999999726798189997589---99999999873878---------------7418
Q ss_pred HHHHCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 688568984686468984389993438988999999999
Q gi|254780606|r 610 AEQLLGRGDMLYMSGGGRIQRVHGPLVSDIEIEKVVQHL 648 (744)
Q Consensus 610 ae~l~g~gd~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 648 (744)
T Consensus 220 ~~YLeKi----I------q~p~~lP~~~~~~~~~~l~~~ 248 (301)
T pfam07693 220 QDYLEKI----I------QLPFKLPPLGLRELRRFLMTL 248 (301)
T ss_pred HHHHHHH----E------ECEEECCCCCHHHHHHHHHHH
T ss_conf 9999854----1------024767998789999999999