HHsearch alignment for GI: 254780606 and conserved domain: smart00534
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.26 E-value=0.002 Score=42.48 Aligned_cols=121 Identities=17% Similarity=0.217 Sum_probs=70.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69970787534479999999999856801107999723421000125775200004444178768999999866769999
Q gi|254780606|r 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEERYRK 494 (744)
Q Consensus 415 ~lvaG~TgsGKS~~l~~~i~sl~~~~~p~~~~~~liD~k~~~~~~~~~~ph~~~~v~~~~~~~~~~l~~~~~em~~r~~~ 494 (744)
T Consensus 2 ~iiTGpN~sGKSt~lk~i~l~~~laq~G---~~--vpa~~~~~~~~d~i~---~-~i~~~d~~~~~~S~F~~e~~~~~~i 72 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIG---SF--VPAESAELPVFDRIF---T-RIGASDSLAQGLSTFMVEMKETANI 72 (185)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHC---CC--EEECCCEEECCCEEE---E-EECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 8997999884899999999999999978---88--615771995031002---3-3564100215641899999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHH-HHHHHHCCEEEEEEEECC
Q ss_conf 9980778679999988642026776665432338679998445687675310358999999-999642013589998516
Q gi|254780606|r 495 MSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQR-LAQMARAAGIHLIMATQR 573 (744)
Q Consensus 495 ~~~~~~~~i~~~n~~~~~~~~~~~~~~~~~~~~~p~ivvviDE~a~l~~~~~~~~e~~~~~-la~~~ra~GihlilatQr 573 (744)
T Consensus 73 l~~~~-----------------------------~~sLvliDEl~~--GT~~~eg~ala~aile~l~~~~~~~~iitTH~ 121 (185)
T smart00534 73 LKNAT-----------------------------ENSLVLLDELGR--GTSTYDGVAIAAAVLEYLLEKIGALTLFATHY 121 (185)
T ss_pred HHHCC-----------------------------CCEEEEECCCCC--CCCHHHHHHHHHHHHHHHHHCCCCEEEEEECH
T ss_conf 98389-----------------------------873763041136--88814789999999999996369759986043
Q ss_pred CC
Q ss_conf 54
Q gi|254780606|r 574 PS 575 (744)
Q Consensus 574 p~ 575 (744)
T Consensus 122 ~e 123 (185)
T smart00534 122 HE 123 (185)
T ss_pred HH
T ss_conf 78