HHsearch alignment for GI: 254780606 and conserved domain: smart00843
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=99.89 E-value=3.1e-24 Score=185.24 Aligned_cols=63 Identities=49% Similarity=0.808 Sum_probs=60.6
Q ss_pred CCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEE
Q ss_conf 776603899999999749862322000001007899999999998797570216886232110
Q gi|254780606|r 679 KERSNLYAKAVDLVIDNQRCSTSFIQRRLQIGYNRAALLVERMEQEGLVSEADHVGKRHVFSE 741 (744)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~s~s~~qr~~~~g~~ra~~~~~~~e~~g~~~~~~~~~~r~~~~~ 741 (744)
T Consensus 1 ~~~D~l~~~a~~~V~~~~~~S~S~lQR~l~IGynRAariid~lE~~GiVsp~~g~~~ReVL~~ 63 (63)
T smart00843 1 EEEDELYDEAVELVIETQKASTSLLQRRLRIGYNRAARLIDQLEEEGIVGPANGSKPREVLVT 63 (63)
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECC
T ss_conf 963289999999999808624899999972050699999999999858788779999834249