RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780606|ref|YP_003065019.1| cell division protein
[Candidatus Liberibacter asiaticus str. psy62]
         (744 letters)



>gnl|CDD|31860 COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related
           proteins [Cell division and chromosome partitioning].
          Length = 858

 Score =  473 bits (1219), Expect = e-134
 Identities = 204/457 (44%), Positives = 269/457 (58%), Gaps = 17/457 (3%)

Query: 290 LEKNAGSLETILEEFGIKGEIINVNPGPVVTLYEFEPAPGIKSSRVIGLADDIARSMSSL 349
           L  +   L   L    I         GP  T +E     G+K   +  L +D A ++ + 
Sbjct: 406 LLVSIARLGRSLGIHLILATQKPDGVGPSNTRFEIALKVGVKVDSIEILGNDDAAALVAK 465

Query: 350 SAR-VAVIPKRNAIGIELPN-ETRETVYLRQIIESRSFSHSKANLALCLGKTISGESVIA 407
           S R +A IP ++ IG + PN        LR++++   F        + L K I  E ++ 
Sbjct: 466 SRRYLAPIPGKSYIGFQSPNSGRPWLPPLRELLDLDEFLERFPLGVIDLPKDIRQEPIVI 525

Query: 408 DLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLL 467
           DLA   H+L+AG TGSGKSVA+NTMI+SLLY   P+E R  ++DPKMLEL+ YDG+PHL 
Sbjct: 526 DLAKAGHLLIAGATGSGKSVALNTMILSLLYTHSPEEVRFYIIDPKMLELAAYDGLPHLG 585

Query: 468 TPVVTNPK-KAVMALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMR 526
            PVVT+ K KA  AL   V EME RY+  S   VRNI+ YNE+I+    ++         
Sbjct: 586 DPVVTDEKEKAEKALAELVAEMERRYKLFSEKGVRNIEGYNEKIAGAIPDE--------- 636

Query: 527 PMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKAN 586
            +PYIVII+DE ADLMMVAGKE+E  I RLAQ  RAAGIHLI+ATQRPSVDVITG IKAN
Sbjct: 637 ELPYIVIIIDEYADLMMVAGKELEELIARLAQKGRAAGIHLILATQRPSVDVITG-IKAN 695

Query: 587 FPIRISFQVTSKIDSRTILGEHGAEQLLGRGDMLYM-SGGGRIQRVHGPLVSDIEIEKVV 645
            P RI+ +++SKIDSR ILG+ GAE+LLGRGDML++  G  +  RV    VSD E+E+VV
Sbjct: 696 IPTRIALRLSSKIDSRLILGQDGAEKLLGRGDMLFLGPGDAKPVRVLPAFVSDEEVEEVV 755

Query: 646 QHLKKQGCPEYLNTVTTDTDTDKDGNNFD---SEEKKERSNLYAKAVDLVIDNQRCSTSF 702
           +HLK Q  P YL+  T                  E++    L+ +A +LV+   + STS 
Sbjct: 756 EHLKSQVEPVYLDLATNPHLLISGETTVLRAIDREEEAMDELFDEAKELVLPPPKASTSL 815

Query: 703 IQRRLQIGYNRAALLVERMEQEGLVSEADHVGKRHVF 739
           +QR L +G NRAA L+E ME  G+V   +    R + 
Sbjct: 816 LQRALDLGLNRAATLIESMELLGIVGPPNGPKGREIL 852



 Score = 56.8 bits (136), Expect = 2e-08
 Identities = 59/251 (23%), Positives = 96/251 (38%), Gaps = 30/251 (11%)

Query: 366 LPNETRETVYLRQIIESRSFSHSKANLALCL-GKTISGESVIADLANMPHILVAGTTGSG 424
           L            I     +S     + L      +    +       PH LVAGTTGSG
Sbjct: 239 LARLRHTQTSENSIPGREDYSRLGVPIGLRGKKGELLNLDLHEKAEGGPHGLVAGTTGSG 298

Query: 425 KSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWA 484
           KS  + T I+SL     P+E   +++D K   ++      H++  +    ++  +A    
Sbjct: 299 KSE-LLTYILSLAINHSPEELNFLLIDYKGGSMANPFKGLHVVAVITNLAEERALAAIKG 357

Query: 485 VREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMV 544
                +R    ++                        G D  P+P++ +I DE A+L   
Sbjct: 358 ELARRQRNHINAYTKSYKR------------------GKDTPPLPHLFLIADEFAELK-S 398

Query: 545 AGKEIEGAIQRLAQMARAAGIHLIMATQRP--SVDVITGTIKANFPIRISFQVTSKIDSR 602
              +    +  +A++ R+ GIHLI+ATQ+P       T          I+ +V  K+DS 
Sbjct: 399 EHPDFAELLVSIARLGRSLGIHLILATQKPDGVGPSNTR-------FEIALKVGVKVDSI 451

Query: 603 TILGEHGAEQL 613
            ILG   A  L
Sbjct: 452 EILGNDDAAAL 462


>gnl|CDD|144975 pfam01580, FtsK_SpoIIIE, FtsK/SpoIIIE family.  FtsK has extensive
           sequence similarity to wide variety of proteins from
           prokaryotes and plasmids, termed the FtsK/SpoIIIE
           family. This domain contains a putative ATP binding
           P-loop motif.  It is found in the FtsK cell division
           protein from E. coli and the stage III sporulation
           protein E SpoIIIE which has roles in regulation of
           prespore specific gene expression in B. subtilis. A
           mutation in FtsK causes a temperature sensitive block in
           cell division and it is involved in peptidoglycan
           synthesis or modification. The SpoIIIE protein is
           implicated in intercellular chromosomal DNA transfer.
          Length = 202

 Score =  231 bits (590), Expect = 7e-61
 Identities = 97/206 (47%), Positives = 138/206 (66%), Gaps = 8/206 (3%)

Query: 375 YLRQIIESRSFSHSKANLALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIM 434
            L+++++ + F  S++ L + LGK ISG  V+ADL  MPH+L+AG TGSGKS  +NT+I+
Sbjct: 1   ELKELLDGKPFRGSRSRLTIALGKDISGNPVVADLVKMPHLLIAGATGSGKSTFLNTLIL 60

Query: 435 SLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVTNPKKAVMALKWAVREMEERYRK 494
           SL  R  P+E R+ ++DPK  EL+  + +PHLL+ V T+P+ A+ AL+  V EME RY  
Sbjct: 61  SLAARHSPEEVRLYLIDPKGGELAALEDLPHLLSAVATDPEDALSALRALVAEMERRYAL 120

Query: 495 MSHLSVRNIKSYNERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKE----IE 550
           +  L VR+I+ YN  I     E   G    +  +P IV+IVDE A+LM+ A K+    +E
Sbjct: 121 LKQLGVRSIEEYNGEI----AEDILGGAGWLEELPPIVVIVDERAELMLAAPKDSEMRVE 176

Query: 551 GAIQRLAQMARAAGIHLIMATQRPSV 576
           GA+ RLA+M RAAGIHL++ATQRP V
Sbjct: 177 GALARLARMGRAAGIHLLLATQRPGV 202


>gnl|CDD|29993 cd01127, TrwB, Bacterial conjugation protein TrwB,  ATP binding
           domain. TrwB is a homohexamer encoded by conjugative
           plasmids in Gram-negative bacteria. TrwB also has an all
           alpha domain which has been hypothesized to be
           responsible for DNA binding. TrwB is a component of Type
           IV secretion and is responsible for the horizontal
           transfer of DNA between bacteria..
          Length = 410

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 5/54 (9%)

Query: 399 TISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDP 452
           TI+G     D     H ++ GTTG+GK+  I  ++ S+  R R D  R I+ DP
Sbjct: 30  TIAGLPFPKDAEEA-HTMIIGTTGTGKTTQIRELLASI--RARGD--RAIIYDP 78


>gnl|CDD|29995 cd01129, PulE-GspE, PulE/GspE The type II secretory pathway is the
           main terminal branch of the general secretory pathway
           (GSP).  It is responsible for the export the majority of
           Gram-negative bacterial exoenzymes and toxins. PulE is a
           cytoplasmic protein of the GSP, which contains an ATP
           binding site and a tetracysteine motif. This subgroup
           also includes PillB and HofB..
          Length = 264

 Score = 37.9 bits (88), Expect = 0.011
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 10/101 (9%)

Query: 341 DIARSMSSLSARVAVIPKRNAIGIE---LPNETRETVYLRQIIESRSFSHSKANLALCLG 397
           DIA        R+ +  K   I +    LP    E+V LR I++ ++           LG
Sbjct: 9   DIAERRKPQDGRIRLKLKGREIDLRVSTLPTIYGESVVLR-ILDKKNQILDLE----KLG 63

Query: 398 KTISGESVIADLANMPH--ILVAGTTGSGKSVAINTMIMSL 436
                  +   L   PH  ILV G TGSGK+  + + +  L
Sbjct: 64  LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL 104


>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
           cellular Activities) superfamily represents an ancient
           group of ATPases belonging to the ASCE (for additional
           strand, catalytic E) division of the P-loop NTPase fold.
           The ASCE division also includes ABC, RecA-like,
           VirD4-like, PilT-like, and SF1/2 helicases. Members of
           the AAA+ ATPases function as molecular chaperons, ATPase
           subunits of proteases, helicases, or nucleic-acid
           stimulated ATPases. The AAA+ proteins contain several
           distinct features in addition to the conserved
           alpha-beta-alpha core domain structure and the Walker A
           and B motifs of the P-loop NTPases..
          Length = 151

 Score = 36.0 bits (83), Expect = 0.037
 Identities = 28/191 (14%), Positives = 57/191 (29%), Gaps = 55/191 (28%)

Query: 406 IADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD-PKMLELSVYDGIP 464
             +L    ++L+ G  G+GK+    T+  ++   L       + ++   +LE  V   + 
Sbjct: 13  ALELPPPKNLLLYGPPGTGKT----TLARAIANELFRPGAPFLYLNASDLLEGLVVAEL- 67

Query: 465 HLLTPVVTNPKKAVMALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQGCGDD 524
                                                    +  R+     EK +     
Sbjct: 68  --------------------------------------FGHFLVRLLFELAEKAKPG--- 86

Query: 525 MRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLAQM-ARAAGIHLIMATQRPSVDVITGTI 583
                  V+ +DE+  L   A   +   ++ L  +      + +I AT RP +  +   +
Sbjct: 87  -------VLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRAL 139

Query: 584 KANFPIRISFQ 594
                IRI   
Sbjct: 140 YDRLDIRIVIP 150


>gnl|CDD|33254 COG3451, VirB4, Type IV secretory pathway, VirB4 components
           [Intracellular trafficking and secretion].
          Length = 796

 Score = 36.1 bits (83), Expect = 0.041
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 393 ALCLGKTISGESVIADL---ANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM 449
            L + KT  G     +     ++ H L+ G TG+GK+V ++ ++   L    P   +++ 
Sbjct: 414 PLTVLKTEDGSPFYFNFHVGEDVGHTLIIGPTGAGKTVLLSFLLAQALKYGNP---QIVA 470

Query: 450 VDP 452
            D 
Sbjct: 471 FDK 473


>gnl|CDD|145224 pfam01935, DUF87, Domain of unknown function DUF87.  The function
           of this prokaryotic domain is unknown. It contains
           several conserved aspartates and histidines that could
           be metal ligands.
          Length = 218

 Score = 35.4 bits (82), Expect = 0.065
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 394 LCLGKTISGESVIA--DLANM--PHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIM 449
           + +G+ + G  V    DL  +   H  + G+TGSGKS  +  ++  LL +       +++
Sbjct: 1   IEIGRLLDGSEVPVYLDLNKLVSRHFAILGSTGSGKSNTVAVLLEELLEKKG---ATVLI 57

Query: 450 VDP 452
            DP
Sbjct: 58  FDP 60


>gnl|CDD|36209 KOG0991, KOG0991, KOG0991, Replication factor C, subunit RFC2
           [Replication, recombination and repair].
          Length = 333

 Score = 34.9 bits (80), Expect = 0.079
 Identities = 15/39 (38%), Positives = 25/39 (64%)

Query: 399 TISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLL 437
           T+   SVIA   NMP+++++G  G+GK+ +I  +   LL
Sbjct: 35  TVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELL 73


>gnl|CDD|32635 COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus
           assembly pathway, ATPase PilB [Cell motility and
           secretion / Intracellular trafficking and secretion].
          Length = 500

 Score = 34.6 bits (79), Expect = 0.11
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 406 IADLANMPH--ILVAGTTGSGKSVAINTMIMSL 436
           +  L N P   ILV G TGSGK+  +   +  L
Sbjct: 250 LLRLLNRPQGLILVTGPTGSGKTTTLYAALSEL 282


>gnl|CDD|30782 COG0433, COG0433, Predicted ATPase [General function prediction
           only].
          Length = 520

 Score = 33.8 bits (76), Expect = 0.16
 Identities = 33/154 (21%), Positives = 47/154 (30%), Gaps = 17/154 (11%)

Query: 325 EPAPGIKSSRVIGLADDIARSMSSLSARVAVIPKRNAIGI--------ELPNETRETVYL 376
           +    I    +  L   I  S+  L      I KR  +G           P      VY 
Sbjct: 67  DRITSIDLEALADLEAFIISSVLDLEGSYVGIAKRRVLGELEPELLPPRSPVRPGSPVYR 126

Query: 377 -RQIIESRSFSHSKANLALCLGKTISGESVIADL-----ANMPHILVAGTTGSGKSVAIN 430
               +  +          L LG  + G  V   L         HI + G+TGSGKS   N
Sbjct: 127 ASDEVLEKILGFDVDGRGLLLGALLDGGEVPVYLDLNKLVLARHIAILGSTGSGKS---N 183

Query: 431 TMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIP 464
              + L   L  D   +++ DP      +     
Sbjct: 184 LAKVLLEELLGKDGATVVIFDPHGEYDLLRLDRA 217



 Score = 30.3 bits (67), Expect = 1.7
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 11/77 (14%)

Query: 529 PYIVIIVDEMADLMMVAGKE-IEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANF 587
             ++I+++E  +    + K  ++  I+R+A+  R  G+ L++ATQRPS          + 
Sbjct: 391 GPLLIVIEEAHNFAPSSRKAPVKDIIERIAREGRKFGVGLVLATQRPS----------DL 440

Query: 588 PIRISFQVTSKIDSRTI 604
              +  Q  +KI  R +
Sbjct: 441 DDLVLSQANTKIILRLV 457


>gnl|CDD|36372 KOG1157, KOG1157, KOG1157, Predicted guanosine polyphosphate
           pyrophosphohydrolase/synthase [Signal transduction
           mechanisms].
          Length = 543

 Score = 33.1 bits (75), Expect = 0.27
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 11/112 (9%)

Query: 204 DLAPHMSTEYLHNKKIRTDSTPTTAGDQQKKSSIDHKPSSSNTMTEHM----FQDTSQEI 259
           ++   +  E L  K       P  A D ++++ + HK  SS  + + +         Q  
Sbjct: 35  EMDSVLVDEALGFKMEVELVGPY-ARDLERRAQLWHKTFSSELVIKALYEAAKAHRGQMR 93

Query: 260 AKGQKQYEQPCS------SFLQVQSNVNLQGITHEILEKNAGSLETILEEFG 305
           A   + Y   C       + +   S V +  I H++++    S E IL  FG
Sbjct: 94  ADDDRPYLNHCIETAMILADIGADSTVVVAAILHDVVDDTFMSYEEILRHFG 145


>gnl|CDD|73322 cd02755, MopB_Thiosulfate-R-like, The MopB_Thiosulfate-R-like CD
           contains thiosulfate-, sulfur-, and
           polysulfide-reductases, and other related proteins.
           Thiosulfate reductase catalyzes the cleavage of
           sulfur-sulfur bonds in thiosulfate. Polysulfide
           reductase is a membrane-bound enzyme that catalyzes the
           reduction of polysulfide using either hydrogen or
           formate as the electron donor. Members of the
           MopB_Thiosulfate-R-like CD belong to the
           molybdopterin_binding (MopB) superfamily of proteins..
          Length = 454

 Score = 32.9 bits (75), Expect = 0.29
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 402 GESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELS 458
           G  V  D  N  +I++ G   +    AI  +    L +   +  ++++VDP+  EL+
Sbjct: 147 GGEVNPDFENARYIILFGRNLAE---AIIVVDARRLMKALENGAKVVVVDPRFSELA 200


>gnl|CDD|112562 pfam03753, HHV6-IE, Human herpesvirus 6 immediate early protein.
           The proteins in this family are poorly characterized,
           but an investigation has indicated that the immediate
           early protein is required the down-regulation of MHC
           class I expression in dendritic cells. Human herpesvirus
           6 immediate early protein is also referred to as U90.
          Length = 993

 Score = 33.1 bits (75), Expect = 0.30
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 2/113 (1%)

Query: 130 ETIEPSLDVIEEVNTDTASNVSD-QINQNPDTLSWLSDFAFFEGLSTPHSFLSFNDHHQY 188
           E IE   D    +    + ++ +  I  N +  S + D       STP     F+DH +Y
Sbjct: 294 EQIEKLYDDTGLIKPLNSISIMEGYITGNKNRSSSICDSNLDPSDSTPLELEDFDDHGKY 353

Query: 189 T-PIPIQSAEDLSDHTDLAPHMSTEYLHNKKIRTDSTPTTAGDQQKKSSIDHK 240
           +    I+S  +  D+  ++      +  N   +     T          ID +
Sbjct: 354 SEESSIESIHEDDDNLAVSQASDESHSKNTTGKNPEVCTREYKLDFFEEIDTQ 406


>gnl|CDD|146673 pfam04157, EAP30, EAP30/Vps36 family.  This family includes EAP30
           as well as the Vps36 protein. Vps36 is involved in Golgi
           to endosome trafficking. EAP30 is a subunit of the ELL
           complex. The ELL is an 80-kDa RNA polymerase II
           transcription factor. ELL interacts with three other
           proteins to form the complex known as ELL complex. The
           ELL complex is capable of increasing that catalytic rate
           of transcription elongation, but is unable to repress
           initiation of transcription by RNA polymerase II as is
           the case of ELL. EAP30 is thought to lead to the
           derepression of ELL's transcriptional inhibitory
           activity.
          Length = 219

 Score = 32.6 bits (75), Expect = 0.40
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 635 LVSDIEIEKVVQHLKKQGCPEYLNTVTTDTDTDKDGNNF-DSEEKKERSNLYAKAVDLVI 693
           LVS  ++ K  + L+K G    L  V         G     S    E S    K ++L  
Sbjct: 130 LVSPDDLLKACKKLEKLGLGFKLVKV-------GSGVLVVQSVPDSELSTDQTKILELAE 182

Query: 694 DNQRCSTSFIQRRLQIGYNRAALLVERMEQEGLV 727
           +    + S +  +L     RA  ++E+ E+EGL+
Sbjct: 183 ELGGVTASELAEKLGWSIGRAKEVLEKAEKEGLL 216


>gnl|CDD|35548 KOG0327, KOG0327, KOG0327, Translation initiation factor 4F,
           helicase subunit (eIF-4A) and related helicases
           [Translation, ribosomal structure and biogenesis].
          Length = 397

 Score = 32.2 bits (73), Expect = 0.54
 Identities = 33/141 (23%), Positives = 46/141 (32%), Gaps = 12/141 (8%)

Query: 327 APGIKSSRVIGLADDIARSM--SSLSARVAVIPKRNAIGIELPNETRETVYLRQIIESRS 384
            P IK   VI  A           +S    +          +   TRE     Q +    
Sbjct: 58  LPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRAL 117

Query: 385 FSHSKANLALCLGKTISGESVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDE 444
             H   ++  C+G T       A L + PHI+V GT G           M     L  D 
Sbjct: 118 GDHMDVSVHACIGGTNVRREDQALLKDKPHIVV-GTPG-------RVFDMLNRGSLSTDG 169

Query: 445 CRMIMVDP--KMLELSVYDGI 463
            +M ++D   +ML     D I
Sbjct: 170 IKMFVLDEADEMLSRGFKDQI 190


>gnl|CDD|32636 COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase
           PilT [Cell motility and secretion / Intracellular
           trafficking and secretion].
          Length = 353

 Score = 32.1 bits (73), Expect = 0.60
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 405 VIADLANMPH--ILVAGTTGSGKSVAINTMI 433
           ++ +LA  P   ILV G TGSGKS  +  MI
Sbjct: 116 IVRELAESPRGLILVTGPTGSGKSTTLAAMI 146


>gnl|CDD|109493 pfam00437, GSPII_E, Type II/IV secretion system protein.  This
           family contains both type II and type IV pathway
           secretion proteins from bacteria. VirB11 ATPase is a
           subunit of the Agrobacterium tumefaciens transfer DNA
           (T-DNA) transfer system, a type IV secretion pathway
           required for delivery of T-DNA and effector proteins to
           plant cells during infection.
          Length = 283

 Score = 31.9 bits (73), Expect = 0.66
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 5/45 (11%)

Query: 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMV-DPKMLELS 458
           ILV+G TGSGK+  +      LL  +  D+ R++ + DP  ++L 
Sbjct: 142 ILVSGGTGSGKTTLLYA----LLNEINTDDERIVTIEDPVEIQLE 182


>gnl|CDD|113806 pfam05049, IIGP, Interferon-inducible GTPase (IIGP).
           Interferon-inducible GTPase (IIGP) is thought to play a
           role in in intracellular defence. IIGP is predominantly
           associated with the Golgi apparatus and also localizes
           to the endoplasmic reticulum and exerts a distinct role
           in IFN-induced intracellular membrane trafficking or
           processing.
          Length = 375

 Score = 31.3 bits (71), Expect = 0.87
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 396 LGKTISG-ESVIADLANMP-HILVAGTTGSGKSVAINTM 432
           L K +S  +  I ++++ P  I V G +G+GKS  IN +
Sbjct: 17  LQKVVSIIKKAIQEISSAPLKIAVTGDSGNGKSSFINAL 55


>gnl|CDD|30975 COG0630, VirB11, Type IV secretory pathway, VirB11 components, and
           related ATPases involved in archaeal flagella
           biosynthesis [Cell motility and secretion /
           Intracellular trafficking and secretion].
          Length = 312

 Score = 30.7 bits (69), Expect = 1.3
 Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 18/154 (11%)

Query: 295 GSLETILEEFGIKGEIINVN-PGPVVTLYEFEPAPGIKSSRVIGLADDIARSMSSLSARV 353
           G LE +L +  I  E I VN PGPV   ++   +    ++      +++      L+ R 
Sbjct: 16  GKLEPLLRDPRI--EDIVVNGPGPVYVEHKGGGS--YVTNIPFLTEEELDSLAIRLAQRS 71

Query: 354 A--VIPKRNAIGIELPNETRETVYLRQIIES-------RSFSHSKANLALCLGKTISGES 404
              +      +   LP+ +R  + L   +         R FS         +        
Sbjct: 72  GKPISEANPILDATLPDGSRIQIVLGPEVSPNGSSFTIRKFSDEPITPEDLIEYGTISPE 131

Query: 405 VIADLA----NMPHILVAGTTGSGKSVAINTMIM 434
             A L         I++ G T SGK+  +N ++ 
Sbjct: 132 QAAYLWLAIEARKSIIICGGTASGKTTLLNALLD 165


>gnl|CDD|145645 pfam02606, LpxK, Tetraacyldisaccharide-1-P 4'-kinase.  This family
           consists of tetraacyldisaccharide-1-P 4'-kinase also
           known as Lipid-A 4'-kinase or Lipid A biosynthesis
           protein LpxK, EC:2.7.1.130. This enzyme catalyses the
           reaction: ATP + 2,3-bis(3-hydroxytetradecanoyl)-D
           -glucosaminyl-(beta-D-1,6)-2,
           3-bis(3-hydroxytetradecanoyl)-D-glu cosam inyl
           beta-phosphate <=> ADP +
           2,3,2',3'-tetrakis(3-hydroxytetradecanoyl)-D-
           glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate.
           This enzyme is involved in the synthesis of lipid A
           portion of the bacterial lipopolysaccharide layer (LPS).
           The family contains a P-loop motif at the N terminus.
          Length = 318

 Score = 31.0 bits (71), Expect = 1.4
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)

Query: 169 FFEGLS----TPHSFLSFNDHHQYTPIPIQSAEDLSDHTDL 205
           FF+ L        + L+F DHH +T   +   E  +    L
Sbjct: 236 FFDTLRALGLEVVATLAFPDHHPFTAADLAFLEAEAKEPGL 276


>gnl|CDD|133259 cd01850, CDC_Septin, CDC/Septin.  Septins are a conserved family of
           GTP-binding proteins associated with diverse processes
           in dividing and non-dividing cells.  They were first
           discovered in the budding yeast S. cerevisiae as a set
           of genes (CDC3, CDC10, CDC11 and CDC12) required for
           normal bud morphology. Septins are also present in
           metazoan cells, where they are required for cytokinesis
           in some systems, and implicated in a variety of other
           processes involving organization of the cell cortex and
           exocytosis.  In humans, 12 septin genes generate dozens
           of polypeptides, many of which comprise heterooligomeric
           complexes. Since septin mutants are commonly defective
           in cytokinesis and formation of the neck formation of
           the neck filaments/septin rings, septins have been
           considered to be the primary constituents of the neck
           filaments.  Septins belong to the GTPase superfamily for
           their conserved GTPase motifs and enzymatic activities.
          Length = 276

 Score = 30.6 bits (70), Expect = 1.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDE 444
           I+V G +G GKS  INT+  + L       
Sbjct: 7   IMVVGESGLGKSTFINTLFNTKLIPSDYPP 36


>gnl|CDD|35566 KOG0345, KOG0345, KOG0345, ATP-dependent RNA helicase [RNA
           processing and modification].
          Length = 567

 Score = 30.7 bits (69), Expect = 1.7
 Identities = 42/201 (20%), Positives = 79/201 (39%), Gaps = 18/201 (8%)

Query: 404 SVIADLANMPHILVAGTTGSGKSVAINTMIMSLLYR----LRPDECRMIMVDPKMLELSV 459
           + I  L     ++V   TGSGK++A    ++ ++YR      P +   +++ P   EL+ 
Sbjct: 35  ATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTR-ELAR 93

Query: 460 YDGIPHLLTPVVTNPKKAVMALKWAVREMEERYRKMSHLSVRNIKSYNERISTMYGEKPQ 519
              I  +  P + +       L    R +EE  +         +     R+  +   + +
Sbjct: 94  Q--IREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAE 151

Query: 520 GCGDDMRPMPYIVIIVDEMADLMMVAG--KEIEGAIQRLAQMARAAGIHLIMATQRPSVD 577
                 R +  +V+  DE AD ++  G    +   +  L +  R     L  ATQ   V+
Sbjct: 152 KL--SFRSLEILVL--DE-ADRLLDMGFEASVNTILSFLPKQRRTG---LFSATQTQEVE 203

Query: 578 VITGTIKANFPIRISFQVTSK 598
            +      N P+R+S +  SK
Sbjct: 204 DLARAGLRN-PVRVSVKEKSK 223


>gnl|CDD|48072 cd01968, Nitrogenase_NifE_I, Nitrogenase_NifE_I: a subgroup of the
           NifE subunit of the NifEN complex: NifE forms an
           alpha2beta2 tetramer with NifN.  NifE and NifN are
           structurally homologous to nitrogenase MoFe protein
           alpha and beta subunits respectively.  NifEN
           participates in the synthesis of the iron-molybdenum
           cofactor (FeMoco) of the MoFe protein.  NifB-co (an iron
           and sulfur containing precursor of the FeMoco) from NifB
           is transferred to the NifEN complex where it is further
           processed to FeMoco. The NifEN bound precursor of FeMoco
           has been identified as a molybdenum-free, iron- and
           sulfur- containing analog of FeMoco. It has been
           suggested that this NifEN bound precursor also acts as a
           cofactor precursor in nitrogenase systems which require
           a cofactor other than FeMoco: i.e. iron-vanadium
           cofactor (FeVco) or iron only cofactor (FeFeco)..
          Length = 410

 Score = 30.2 bits (68), Expect = 2.2
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 508 ERISTMYGEKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQR 555
           ERI  + GE      DD  P     ++ ++ ADL++  GKE   A++ 
Sbjct: 327 ERIKELLGEG-TVIVDDANPRELKKLLKEKKADLLVAGGKERYLALKL 373


>gnl|CDD|34569 COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF
           [Intracellular trafficking and secretion].
          Length = 355

 Score = 29.9 bits (67), Expect = 2.6
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 15/84 (17%)

Query: 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPH---LLT--P 469
           IL++G TGSGK+    T++ +L   +  DE  + + D   L+L      PH   L T  P
Sbjct: 176 ILISGGTGSGKT----TLLNALSGFIDSDERVITIEDTAELQL----AHPHVVRLETRPP 227

Query: 470 VVTNPKKAVMA--LKWAVREMEER 491
            V    +  M   +K A+R   +R
Sbjct: 228 NVEGTGEVTMRDLVKNALRMRPDR 251


>gnl|CDD|35954 KOG0735, KOG0735, KOG0735, AAA+-type ATPase [Posttranslational
           modification, protein turnover, chaperones].
          Length = 952

 Score = 30.0 bits (67), Expect = 2.7
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 413 PHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVT 472
            +IL+ G  GSGK+  +  +     Y  +     + +V    L+ S  + I   L  V +
Sbjct: 432 GNILLNGPKGSGKTNLVKALFD---YYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFS 488


>gnl|CDD|31846 COG1660, COG1660, Predicted P-loop-containing kinase [General
           function prediction only].
          Length = 286

 Score = 29.8 bits (67), Expect = 2.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 412 MPHILVAGTTGSGKSVAINTM 432
           M  ++V G +G+GKSVA+  +
Sbjct: 1   MRLVIVTGLSGAGKSVALRVL 21


>gnl|CDD|58523 cd04501, SGNH_hydrolase_like_4, Members of the SGNH-hydrolase
           superfamily, a diverse family of lipases and esterases.
           The tertiary fold of the enzyme is substantially
           different from that of the alpha/beta hydrolase family
           and unique among all known hydrolases; its active site
           closely resembles the Ser-His-Asp(Glu) triad from other
           serine hydrolases, but may lack the carboxlic acid..
          Length = 183

 Score = 29.5 bits (66), Expect = 3.8
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 523 DDMRPMPYIVIIVDEMADLMM-VAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITG 581
           D +   P +VII+    D+++  + + I+  I+ + ++A A GI +I+A+  P  D    
Sbjct: 54  DVIALKPAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILASPLPVDDYPWK 113

Query: 582 TIKANFPIRIS 592
                   ++ 
Sbjct: 114 PQWLRPANKLK 124


>gnl|CDD|37246 KOG2035, KOG2035, KOG2035, Replication factor C, subunit RFC3
           [Energy production and conversion, Replication,
           recombination and repair].
          Length = 351

 Score = 29.5 bits (66), Expect = 3.9
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 13/73 (17%)

Query: 406 IADLANMPHILVAGTTGSGKSVAINTMIMSLL--------YRLRPDECRMIMVDPKMLEL 457
           ++   + PH+LV G +G+GK     T IM LL         +L+ +         K LE+
Sbjct: 28  LSSTGDFPHLLVYGPSGAGK----KTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEI 83

Query: 458 SVYDGIPHL-LTP 469
           S      HL +TP
Sbjct: 84  STVSSNYHLEITP 96


>gnl|CDD|31829 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination,
           and repair].
          Length = 845

 Score = 29.2 bits (65), Expect = 4.4
 Identities = 49/263 (18%), Positives = 89/263 (33%), Gaps = 64/263 (24%)

Query: 409 LANMPHILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLT 468
           +     +++ G TGSGK+  +   ++           ++    P+ L             
Sbjct: 62  IEQNQVVIIVGETGSGKTTQLPQFLLEEGLG---IAGKIGCTQPRRLA------------ 106

Query: 469 PVVTNPKKAVMALKWAVREMEERYRKMSHLSVR--NIKSYNERISTMY-GEKPQGCGDDM 525
                   A    +    E+ E+  +    S+R  +  S   RI  M  G   +   +D 
Sbjct: 107 --------ARSVAERVAEELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDP 158

Query: 526 RPMPYIVIIVDE------MADLMMVAGKEIEGAIQRLAQMARAAGIHLIM-ATQ------ 572
               Y V+I+DE        D+++       G ++ L    R     +IM AT       
Sbjct: 159 LLSGYSVVIIDEAHERSLNTDILL-------GLLKDLLARRRDDLKLIIMSATLDAERFS 211

Query: 573 --RPSVDVITGTIKANFPIRISFQVTSKIDS------RTILGEHGAEQLLGRGDML-YMS 623
               +  VI    +  +P+ I +   ++ D          +  H  E   G G +L ++ 
Sbjct: 212 AYFGNAPVIEIEGRT-YPVEIRYLPEAEADYILLDAIVAAVDIHLRE---GSGSILVFLP 267

Query: 624 GGGRIQRVHG-----PLVSDIEI 641
           G   I+R         L  D+EI
Sbjct: 268 GQREIERTAEWLEKAELGDDLEI 290


>gnl|CDD|29996 cd01130, VirB11-like_ATPase, Type IV secretory pathway component
           VirB11, and related ATPases. The homohexamer, VirB11 is
           one of eleven Vir proteins, which are required for
           T-pilus biogenesis and virulence in the transfer of
           T-DNA from the Ti (tumor-inducing) plasmid of bacterial
           to plant cells. The pilus is a fibrous cell surface
           organelle, which mediates adhesion between bacteria
           during conjugative transfer or between bacteria and host
           eukaryotic cells during infection. VirB11- related
           ATPases include the archaeal flagella biosynthesis
           protein and the pilus assembly proteins CpaF/TadA and
           TrbB.  This alignment contains the C-terminal domain,
           which is the ATPase..
          Length = 186

 Score = 29.1 bits (65), Expect = 4.6
 Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 5/37 (13%)

Query: 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVD 451
           IL++G TGSGK+    T++ +LL  + PDE R+I ++
Sbjct: 28  ILISGGTGSGKT----TLLNALLAFIPPDE-RIITIE 59


>gnl|CDD|144365 pfam00735, Septin, Septin.  Members of this family include CDC3,
           CDC10, CDC11 and CDC12/Septin. Members of this family
           bind GTP. As regards the septins, these are polypeptides
           of 30-65kDa with three characteristic GTPase motifs
           (G-1, G-3 and G-4) that are similar to those of the Ras
           family. The G-4 motif is strictly conserved with a
           unique septin consensus of AKAD. Most septins are
           thought to have at least one coiled-coil region, which
           in some cases is necessary for intermolecular
           interactions that allow septins to polymerize to form
           rod-shaped complexes. In turn, these are arranged into
           tandem arrays to form filaments. They are
           multifunctional proteins, with roles in cytokinesis,
           sporulation, germ cell development, exocytosis and
           apoptosis.
          Length = 280

 Score = 29.2 bits (66), Expect = 4.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 415 ILVAGTTGSGKSVAINTMIMSLLYRLR 441
           ++V G +G GK+  INT+ ++ LY  R
Sbjct: 7   LMVVGESGLGKTTLINTLFLTDLYPER 33


>gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted
           acetyltransferase domain [General function prediction
           only].
          Length = 593

 Score = 28.8 bits (64), Expect = 5.1
 Identities = 42/180 (23%), Positives = 69/180 (38%), Gaps = 39/180 (21%)

Query: 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDPKMLELSVYDGIPHLLTPVVT-- 472
           + V G +G+GK+  +  MI+        ++ R      ++ + +V   IP    P     
Sbjct: 412 VAVVGQSGAGKTTLLR-MILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEV 470

Query: 473 -----------NPKKAVMALKWAVREMEERYR-KMSHLSVRNIKSYNERISTMYGEKPQG 520
                      +   AV  L  A       YR K S LS    +    +++ +  E+P  
Sbjct: 471 TILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTG--QKERAKLAKLLAERPN- 527

Query: 521 CGDDMRPMPYIVIIVDEMADLMMVAGKEIEGAIQRLA----QMARAAGIHLIMATQRPSV 576
                      V+++DE A  +       E    R+A    ++AR AGI LI+ T RP V
Sbjct: 528 -----------VLLIDEFAAHLD------ELTAVRVARKISELAREAGITLIVVTHRPEV 570


>gnl|CDD|37142 KOG1931, KOG1931, KOG1931, Putative transmembrane protein [General
           function prediction only].
          Length = 1156

 Score = 28.8 bits (64), Expect = 5.3
 Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 29/126 (23%)

Query: 8   NLHWLET---PHKQVDLKSFVPPWHEAFLLA-----------PNVRFTRTPENDLNRYRN 53
           N+ W  +     K + L     P+ E  L             P +        D+++Y+ 
Sbjct: 36  NIEWRRSYGRVPKVIRLPIEFIPFGEEELDQDKSGDKSLLEFPFLHILIVECIDIDQYKA 95

Query: 54  N----STLQQPKETEHSIGDYLHTKAVTESLKSTSSLVYLKNRFMMNRNSVADQ----FN 105
                 T        +S  D++       + +S  S        +    SV D+    F 
Sbjct: 96  TVRPLVTKWLKNLESNSSSDWMIVIVEYAAKRSNDS-------NLFPVKSVMDKIRKDFP 148

Query: 106 SQKTPH 111
           +++T  
Sbjct: 149 TKQTDR 154


>gnl|CDD|29997 cd01131, PilT, Pilus retraction ATPase PilT. PilT is a nucleotide
           binding protein responsible for the retraction of type
           IV pili, likely by pili disassembly. This retraction
           provides the force required for travel of bacteria in
           low water environments by a mechanism known as twitching
           motility..
          Length = 198

 Score = 29.0 bits (65), Expect = 5.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 415 ILVAGTTGSGKSVAINTMI 433
           +LV G TGSGKS  +  MI
Sbjct: 4   VLVTGPTGSGKSTTLAAMI 22


>gnl|CDD|146942 pfam04548, AIG1, AIG1 family.  Arabidopsis protein AIG1 appears to
           be involved in plant resistance to bacteria.
          Length = 200

 Score = 28.7 bits (65), Expect = 6.2
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 17/62 (27%)

Query: 415 ILVAGTTGSGKSVAINTMI----------------MSLLYRLRPDECRMIMVD-PKMLEL 457
           I++ G TG+GKS   N+++                   L     D   + ++D P + +L
Sbjct: 3   IVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSRTWDGRIINVIDTPGLFDL 62

Query: 458 SV 459
           SV
Sbjct: 63  SV 64


>gnl|CDD|35422 KOG0201, KOG0201, KOG0201, Serine/threonine protein kinase [Signal
           transduction mechanisms].
          Length = 467

 Score = 28.1 bits (62), Expect = 8.6
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 6/91 (6%)

Query: 231 QQKKSSIDHKPSSSNTMTEHMFQDTSQEIAKGQKQYEQPCSSFLQVQSNVNLQGITHEIL 290
           Q+  S    +PSS  T +   F  ++    + + +Y QP S+      +     +  ++ 
Sbjct: 346 QRTSSPSGSQPSSGTTASGSGFNKSTSL--QNESEYAQPDSACPSPIPSPVFGLLNCKLS 403

Query: 291 EK----NAGSLETILEEFGIKGEIINVNPGP 317
                 +AGS   +           N  PG 
Sbjct: 404 STIRDPSAGSSGALDSLRNAFSSAENSCPGI 434


>gnl|CDD|35571 KOG0350, KOG0350, KOG0350, DEAD-box ATP-dependent RNA helicase [RNA
           processing and modification].
          Length = 620

 Score = 28.1 bits (62), Expect = 8.6
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 415 ILVAGTTGSGKSVAINTMIMSLLYRLRPDECRMIMVDP-KMLELSVYD 461
           I V   TGSGK++A    I+ LL        R +++ P + L L VYD
Sbjct: 186 ICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYD 233


>gnl|CDD|30033 cd00530, PTE, Phosphotriesterase (PTE) catalyzes the hydrolysis of
           organophosphate nerve agents, including the chemical
           warfare agents VX, soman, and sarin as well as the
           insecticide paraoxon. PTE exists as a homodimer with one
           active site per monomer. The active site is located next
           to a binuclear metal center, at the C-terminal end of a
           TIM alpha- beta barrel motif.  The native enzyme
           contains two zinc ions at the active site however these
           can be replaced with other metals such as cobalt,
           cadmium, nickel or manganese and the enzyme remains
           active..
          Length = 293

 Score = 28.3 bits (63), Expect = 8.7
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 9/64 (14%)

Query: 516 EKPQGCGDDMRPMPYIVIIVDEMADLMMVAGKEIEGA--------IQRLAQMARAAGIHL 567
            +     DD           +E+       G+ I  A        +++LA++ARA G+++
Sbjct: 17  VRDPPEVDDFDLADVEAAK-EELKRFRAHGGRTIVDATPPGIGRDVEKLAEVARATGVNI 75

Query: 568 IMAT 571
           + AT
Sbjct: 76  VAAT 79


>gnl|CDD|31921 COG1735, Php, Predicted metal-dependent hydrolase with the
           TIM-barrel fold [General function prediction only].
          Length = 316

 Score = 28.3 bits (63), Expect = 8.8
 Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 8/47 (17%)

Query: 533 IIVDEMADLMMVAGKEIEGA--------IQRLAQMARAAGIHLIMAT 571
           + + E+  LM   G+ I  A        + ++ ++A A G++++ AT
Sbjct: 49  LAIAELKRLMARGGQTIVDATNIGIGRDVLKMRRVAEATGLNIVAAT 95


>gnl|CDD|107296 cd06301, PBP1_rhizopine_binding_like, Periplasmic binding proteins
           specific to rhizopines.  Periplasmic binding proteins
           specific to rhizopines, which are simple sugar-like
           compounds produced in the nodules induced by the
           symbiotic root nodule bacteria, such as Rhizobium and
           Sinorhizobium. Rhizopine-binding-like proteins from
           other bacteria are also included. Two inositol based
           rhizopine compounds are known to date:
           L-3-O-methly-scyllo-inosamine (3-O-MSI) and
           scyllo-inosamine. Bacterial strains that can metabolize
           rhizopine have a greater competitive advantage in
           nodulation and rhizopine synthesis is regulated by
           NifA/NtrA regulatory transcription activators which are
           maximally expressed at the onset of nitrogen fixation in
           bacteroids. The members of this group belong to the
           pentose/hexose sugar-binding protein family of the type
           I periplasmic binding protein superfamily.
          Length = 272

 Score = 28.0 bits (63), Expect = 8.9
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 12/74 (16%)

Query: 552 AIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPIRISFQVTSK-IDSRTILGEHGA 610
           A   + + A AAGI L+   +RP           N P  +++ V S  + +  +  E+ A
Sbjct: 69  ATAPIVKAANAAGIPLVYVNRRPE----------NAPKGVAY-VGSDEVVAGRLQAEYVA 117

Query: 611 EQLLGRGDMLYMSG 624
           ++L G+G++  + G
Sbjct: 118 DKLGGKGNVAILMG 131


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.315    0.131    0.372 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 8,640,502
Number of extensions: 454442
Number of successful extensions: 1478
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1466
Number of HSP's successfully gapped: 57
Length of query: 744
Length of database: 6,263,737
Length adjustment: 101
Effective length of query: 643
Effective length of database: 4,081,228
Effective search space: 2624229604
Effective search space used: 2624229604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.4 bits)