Query gi|254780607|ref|YP_003065020.1| hypothetical protein CLIBASIA_02470 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 131
No_of_seqs 104 out of 574
Neff 7.8
Searched_HMMs 33803
Date Wed Jun 1 15:17:50 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780607.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3gi7_A Secreted protein of un 99.9 3.4E-24 1E-28 162.9 13.3 113 15-128 2-121 (122)
2 >3fvy_A Dipeptidyl-peptidase 3 14.2 75 0.0022 12.5 2.4 21 63-83 92-112 (245)
3 >2a3m_A COG3005: nitrate/TMAO 13.5 46 0.0014 13.8 0.0 18 1-18 1-18 (83)
4 >2f2f_C CDT C, cytolethal dist 10.2 85 0.0025 12.2 0.5 18 1-18 1-18 (186)
5 >2i3y_A Epididymal secretory g 8.9 99 0.0029 11.8 0.4 14 1-14 1-14 (215)
6 >3d2q_A Muscleblind-like prote 8.8 1.1E+02 0.0034 11.4 1.0 11 119-129 17-27 (70)
7 >3b72_A Lysozyme C; hen egg-wh 8.2 1E+02 0.003 11.7 0.2 19 1-19 1-19 (147)
8 >2gzd_C RAB11 family-interacti 8.0 1.3E+02 0.0037 11.2 1.4 12 107-118 66-77 (107)
9 >1mus_A TN5 transposase; hairp 7.9 1.3E+02 0.0037 11.2 5.2 81 44-126 24-124 (130)
10 >3k2c_A Peptidyl-prolyl CIS-tr 7.8 1E+02 0.003 11.8 0.1 22 1-22 1-22 (193)
No 1
>>3gi7_A Secreted protein of unknown function DUF1311; NP_742474.1, structural genomics, joint center for structural genomics, JCSG; 1.85A {Pseudomonas putida KT2440} (A:)
Probab=99.92 E-value=3.4e-24 Score=162.95 Aligned_cols=113 Identities=18% Similarity=0.359 Sum_probs=102.9
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 31012202378899899999999999999999999999999732------935689999999999999999788755124
Q gi|254780607|r 15 AFQSMALNCNETLMQADMNQCTGNSFALVKEKLEATYKKVLEKV------EKHQRELFEKSQMAWEIYRGSECAFAASGA 88 (131)
Q Consensus 15 s~~a~a~dC~~a~t~~e~~~C~~~~~~~ad~~Ln~~y~~l~~~l------~~~~~~~L~~sQr~W~~~R~~~C~~~~~~~ 88 (131)
++.++++||.++.|+.+|++|+...++.+|++||++|+.+++.+ ++..++.|+.+|++|++||+++|.++...+
T Consensus 2 ~a~~~~~dC~~a~s~~e~~~C~~~~~~~~D~~Ln~~Y~~~~~~~~~~~~~~~~~~~~L~~sQraW~~~R~~~c~~~~~~~ 81 (122)
T 3gi7_A 2 ADEEESTPCDNVETDQQTFACAAFNKQVAERELQSAYDELIERXRDQFGDEAGLXSRIEAAEKVWSQLRDADCKVETHAE 81 (122)
T ss_dssp ----------CTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 76657899899998499999988999999999999999999872202212488999999999999999998888865022
Q ss_pred CCCCH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 68835-67999999999999999999997137236758899
Q gi|254780607|r 89 EEGTA-QSMIYANCLQGHAIERNEKLESYLTCPEGDLLCPF 128 (131)
Q Consensus 89 ~~Gs~-~~~~~~~C~~~~t~~R~~eL~~~l~~~eg~~~~~~ 128 (131)
.+|++ +++.+.+|+.++|++||.+|+.|+++. |+.+||-
T Consensus 82 ~~gs~~~~~~~~~C~~~~t~~Ri~eL~~~~~~~-~~~~~p~ 121 (122)
T 3gi7_A 82 QPGSNAYQIAWNSCIAQRSDERAEYLRSLGSQN-SDEPAPE 121 (122)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCC
T ss_conf 589767889999999999999999999987046-7899999
No 2
>>3fvy_A Dipeptidyl-peptidase 3; SGC, DPP3, alternative splicing, aminopeptidase, cytoplasm, hydrolase, metal-binding, metalloprotease, phosphoprotein; 1.90A {Homo sapiens} (A:1-52,A:253-422,A:670-692)
Probab=14.22 E-value=75 Score=12.51 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999999997887
Q gi|254780607|r 63 RELFEKSQMAWEIYRGSECAF 83 (131)
Q Consensus 63 ~~~L~~sQr~W~~~R~~~C~~ 83 (131)
-...+++|+.|++-.+...+.
T Consensus 92 ~~~~k~s~~~WvkD~~p~VE~ 112 (245)
T 3fvy_A 92 IEAHKRGSRFWIQDKGPIVES 112 (245)
T ss_dssp HHHHHHHHHHHHHSCSCSEEE
T ss_pred HHHHHHHHHHHHHCCCCCEEE
T ss_conf 789899899998567875356
No 3
>>2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound tetraheme cytochrome C subunit; electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A* (A:1-83)
Probab=13.51 E-value=46 Score=13.77 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=10.1
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 925999999999963101
Q gi|254780607|r 1 MCRKIIFALTIIAIAFQS 18 (131)
Q Consensus 1 m~k~il~~~~~~~~s~~a 18 (131)
|+|.+++++.+++..+.+
T Consensus 1 Mkk~li~~~~~~l~~~~~ 18 (83)
T 2a3m_A 1 MRKSLFAVMVLALVAAFA 18 (83)
T ss_dssp ------------------
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 906899999999999998
No 4
>>2f2f_C CDT C, cytolethal distending toxin C; actinobacillus actinomycetemcomitans, oligomerization, stability and toxic activity; 2.40A {Aggregatibacter actinomycetemcomitans} (C:)
Probab=10.17 E-value=85 Score=12.19 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=11.0
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 925999999999963101
Q gi|254780607|r 1 MCRKIIFALTIIAIAFQS 18 (131)
Q Consensus 1 m~k~il~~~~~~~~s~~a 18 (131)
|||.++++++++..+...
T Consensus 1 MkK~~i~f~~~~i~~~ss 18 (186)
T 2f2f_C 1 MKKYLLSFLLSMILTLTS 18 (186)
T ss_dssp ------------------
T ss_pred CCHHHHHHHHHHHHHCCC
T ss_conf 931169999999986114
No 5
>>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, structural genomics; 2.00A {Homo sapiens} (A:)
Probab=8.89 E-value=99 Score=11.80 Aligned_cols=14 Identities=7% Similarity=-0.206 Sum_probs=8.8
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 92599999999996
Q gi|254780607|r 1 MCRKIIFALTIIAI 14 (131)
Q Consensus 1 m~k~il~~~~~~~~ 14 (131)
|+|+++++++++..
T Consensus 1 Mk~~~~~~~~~~~~ 14 (215)
T 2i3y_A 1 MHHHHHHSSGVDLG 14 (215)
T ss_dssp --------------
T ss_pred CCCCCCCCCCCCHH
T ss_conf 97543445551012
No 6
>>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A (A:)
Probab=8.82 E-value=1.1e+02 Score=11.43 Aligned_cols=11 Identities=36% Similarity=0.911 Sum_probs=7.6
Q ss_pred CCCCCCCCCCC
Q ss_conf 72367588998
Q gi|254780607|r 119 CPEGDLLCPFI 129 (131)
Q Consensus 119 ~~eg~~~~~~~ 129 (131)
|..||..|||-
T Consensus 17 C~~gd~~C~fa 27 (70)
T 3d2q_A 17 CNRGENDCRFA 27 (70)
T ss_dssp CSSCTTTCSSB
T ss_pred CCCCCCCCCCE
T ss_conf 88999866551
No 7
>>3b72_A Lysozyme C; hen egg-white lysozyme, protein-SDS complex, MPD, allergen, antimicrobial, bacteriolytic enzyme glycosidase, hydrolase; 1.50A {Gallus gallus} (A:)
Probab=8.19 E-value=1e+02 Score=11.72 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=11.5
Q ss_pred CCHHHHHHHHHHHHHHHHC
Q ss_conf 9259999999999631012
Q gi|254780607|r 1 MCRKIIFALTIIAIAFQSM 19 (131)
Q Consensus 1 m~k~il~~~~~~~~s~~a~ 19 (131)
|++.++++++++++...+.
T Consensus 1 Mk~~~~~~~~~~~~~~~a~ 19 (147)
T 3b72_A 1 MRSLLILVLCFLPLAALGK 19 (147)
T ss_dssp ------------------C
T ss_pred CCCHHHHHHHHHHHHHCCC
T ss_conf 9058999999999771253
No 8
>>2gzd_C RAB11 family-interacting protein 2; G protein folds, A-helical coiled coil, protein transport; HET: GTP; 2.44A {Homo sapiens} (C:)
Probab=7.96 E-value=1.3e+02 Score=11.21 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=6.9
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999999713
Q gi|254780607|r 107 IERNEKLESYLT 118 (131)
Q Consensus 107 ~~R~~eL~~~l~ 118 (131)
..++.||+.|++
T Consensus 66 ~~~vrELEdYID 77 (107)
T 2gzd_C 66 DTHIRELEDYID 77 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 9
>>1mus_A TN5 transposase; hairpin, DNA binding, transcription/DNA complex; HET: DNA; 1.90A {Escherichia coli} (A:1-68,A:323-384)
Probab=7.90 E-value=1.3e+02 Score=11.19 Aligned_cols=81 Identities=16% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHH
Q ss_conf 99999999999973293568999999----------------999999999978875512468---83567999999999
Q gi|254780607|r 44 KEKLEATYKKVLEKVEKHQRELFEKS----------------QMAWEIYRGSECAFAASGAEE---GTAQSMIYANCLQG 104 (131)
Q Consensus 44 d~~Ln~~y~~l~~~l~~~~~~~L~~s----------------Qr~W~~~R~~~C~~~~~~~~~---Gs~~~~~~~~C~~~ 104 (131)
|.++++-..++.+++....-..+-.+ ...|....=-..-..+-..+. ++...+.....+.-
T Consensus 24 D~Rl~~Rlv~l~~~La~~p~~Sip~ac~g~~A~t~aAYRF~~N~~W~IE~fhkvlKsGc~vE~~ql~~~~rLer~lai~~ 103 (130)
T 1mus_A 24 DPRRTARLVNVAAQLAKYSGKSITISSEGSKAAQEGAYRFIRNPNWRIEEFHKAWKTGAGAERQRMEKPDNLERMVSILS 103 (130)
T ss_dssp SHHHHHHHHHHHHHHHHTTTSCHHHHTTTCHHHHHHHHHHHTCTTHHHHHHHHHHHTTTCGGGCCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHH
T ss_conf 70388999999999974768885521139989999999986189931999999997247510001468999999999999
Q ss_pred HHHHHHHHHHHHCC-CCCCCCCC
Q ss_conf 99999999999713-72367588
Q gi|254780607|r 105 HAIERNEKLESYLT-CPEGDLLC 126 (131)
Q Consensus 105 ~t~~R~~eL~~~l~-~~eg~~~~ 126 (131)
..--|+.+|..+-. +| |++|
T Consensus 104 vvAwRil~L~~l~r~~p--~l~~ 124 (130)
T 1mus_A 104 FVAVRLLQLRESFTPPQ--ALRA 124 (130)
T ss_dssp HHHHHHHHHHHHHCCC-------
T ss_pred HHHHHHHHHHHHHCCCH--HHHH
T ss_conf 99999999998532523--3310
No 10
>>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} (A:)
Probab=7.82 E-value=1e+02 Score=11.76 Aligned_cols=22 Identities=9% Similarity=-0.023 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9259999999999631012202
Q gi|254780607|r 1 MCRKIIFALTIIAIAFQSMALN 22 (131)
Q Consensus 1 m~k~il~~~~~~~~s~~a~a~d 22 (131)
|+|++++.+++++...+.....
T Consensus 1 M~r~~~~~~~~~~~~~~~~~~~ 22 (193)
T 3k2c_A 1 MAHHHHHHMGTLEAQTQGPGSM 22 (193)
T ss_dssp ---------------CCCCCCC
T ss_pred CCCCCCHHEEEHHHHCCCCCCC
T ss_conf 9742001101213213699764
Done!