Query gi|254780607|ref|YP_003065020.1| hypothetical protein CLIBASIA_02470 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 131 No_of_seqs 104 out of 574 Neff 7.8 Searched_HMMs 13730 Date Wed Jun 1 08:58:24 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780607.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1b24a2 d.95.2.1 (A:100-179) D 8.4 48 0.0035 11.3 1.3 18 107-125 5-22 (80) 2 d1eysc_ a.138.1.2 (C:) Photosy 5.3 71 0.0051 10.3 2.3 71 53-126 58-130 (310) 3 d2gtsa1 a.25.5.1 (A:4-80) Hypo 5.0 74 0.0054 10.2 4.0 11 67-77 65-75 (77) 4 d2nr5a1 a.25.6.1 (A:1-64) Hypo 4.6 79 0.0058 10.1 2.3 18 101-118 41-58 (64) 5 d1f81a_ g.53.1.1 (A:) CREB-bin 4.0 92 0.0067 9.7 0.8 14 115-130 67-80 (87) 6 d1q06a_ a.6.1.3 (A:) Transcrip 3.9 97 0.0071 9.5 0.2 28 103-130 95-124 (127) 7 d1ldda_ a.4.5.34 (A:) Anaphase 3.4 1.1E+02 0.0082 9.1 0.4 17 110-126 47-65 (74) 8 d1fs1b2 d.42.1.1 (B:2-68) Cycl 3.2 1.2E+02 0.0088 9.0 0.3 17 113-130 26-42 (61) 9 d1ef1c_ a.137.5.1 (C:) Moesin 3.2 1.2E+02 0.009 8.9 0.9 11 106-116 80-90 (90) 10 d1wr0a1 a.7.14.1 (A:5-81) Vacu 3.1 1.2E+02 0.0091 8.9 1.4 17 102-118 61-77 (77) No 1 >d1b24a2 d.95.2.1 (A:100-179) DNA endonuclease I-dmoI {Archaeon Desulfurococcus mobilis [TaxId: 2274]} Probab=8.44 E-value=48 Score=11.33 Aligned_cols=18 Identities=22% Similarity=0.242 Sum_probs=9.0 Q ss_pred HHHHHHHHHHCCCCCCCCC Q ss_conf 9999999997137236758 Q gi|254780607|r 107 IERNEKLESYLTCPEGDLL 125 (131) Q Consensus 107 ~~R~~eL~~~l~~~eg~~~ 125 (131) .+|+++++++.+. |||-+ T Consensus 5 ~Er~AFI~GLYdA-EGDKt 22 (80) T d1b24a2 5 REQIAFIKGLYVA-EGDKT 22 (80) T ss_dssp HHHHHHHHHHHHH-HSCTT T ss_pred HHHHHHHHHHHHC-CCCCH T ss_conf 7889998765421-36511 No 2 >d1eysc_ a.138.1.2 (C:) Photosynthetic reaction centre (cytochrome subunit) {Thermochromatium tepidum [TaxId: 1050]} Probab=5.30 E-value=71 Score=10.35 Aligned_cols=71 Identities=10% Similarity=0.171 Sum_probs=46.0 Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 9997329356899999999999999997887--5512468835679999999999999999999971372367588 Q gi|254780607|r 53 KVLEKVEKHQRELFEKSQMAWEIYRGSECAF--AASGAEEGTAQSMIYANCLQGHAIERNEKLESYLTCPEGDLLC 126 (131) Q Consensus 53 ~l~~~l~~~~~~~L~~sQr~W~~~R~~~C~~--~~~~~~~Gs~~~~~~~~C~~~~t~~R~~eL~~~l~~~eg~~~~ 126 (131) ++++.++......|..+-..|+.=.+ -|.+ ....+..-+.+......=+++||+.-........ -+-+|+| T Consensus 58 ~vLgdl~~~~f~rlM~amt~Wv~p~~-gC~yCH~~~~~a~d~~ytk~VaR~Mi~Mtq~iN~~w~~Hv--~~~gVtC 130 (310) T d1eysc_ 58 QVLKDLSVGEFTRTMVAVTTWVSPKE-GCNYCHVPGNWASDDIYTKVVSRRMFELVRAANSDWKAHV--AETGVTC 130 (310) T ss_dssp SSSTTSBHHHHHHHHHHHHHHHCTTT-CGGGSSBTTBTTCCCSHHHHHHHHHHHHHHHHHHHCHHHH--TTTCCCH T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCEE T ss_conf 11068998999999999998747444-7563466554345534589999999999999987688633--5657347 No 3 >d2gtsa1 a.25.5.1 (A:4-80) Hypothetical protein HP0062 {Helicobacter pylori [TaxId: 210]} Probab=4.97 E-value=74 Score=10.22 Aligned_cols=11 Identities=36% Similarity=0.625 Sum_probs=6.5 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999999 Q gi|254780607|r 67 EKSQMAWEIYR 77 (131) Q Consensus 67 ~~sQr~W~~~R 77 (131) ...|-+|++.| T Consensus 65 ~qeqiawlker 75 (77) T d2gtsa1 65 AQEQIAWLKER 75 (77) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999987 No 4 >d2nr5a1 a.25.6.1 (A:1-64) Hypothetical protein SO2669 {Shewanella oneidensis [TaxId: 70863]} Probab=4.60 E-value=79 Score=10.06 Aligned_cols=18 Identities=22% Similarity=0.077 Sum_probs=14.0 Q ss_pred HHHHHHHHHHHHHHHHCC Q ss_conf 999999999999999713 Q gi|254780607|r 101 CLQGHAIERNEKLESYLT 118 (131) Q Consensus 101 C~~~~t~~R~~eL~~~l~ 118 (131) -.++.-..|+++|+.|+- T Consensus 41 qeveiwtnrikeledwlw 58 (64) T d2nr5a1 41 QEVEIWTNRIKELEDWLW 58 (64) T ss_dssp HHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 899999988999999860 No 5 >d1f81a_ g.53.1.1 (A:) CREB-binding transcriptional adaptor protein CBP (p300) {Mouse (Mus musculus) [TaxId: 10090]} Probab=4.04 E-value=92 Score=9.68 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=9.6 Q ss_pred HHCCCCCCCCCCCCCC Q ss_conf 9713723675889989 Q gi|254780607|r 115 SYLTCPEGDLLCPFIN 130 (131) Q Consensus 115 ~~l~~~eg~~~~~~~~ 130 (131) =|-.|. |.+||+|- T Consensus 67 H~k~C~--~~~CpVP~ 80 (87) T d1f81a_ 67 HAKHCQ--ENKCPVPF 80 (87) T ss_dssp HHHHCC--CSSCSSTT T ss_pred HHHHCC--CCCCCCCC T ss_conf 998769--99989995 No 6 >d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]} Probab=3.85 E-value=97 Score=9.53 Aligned_cols=28 Identities=21% Similarity=0.494 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHCC-CC-CCCCCCCCCC Q ss_conf 9999999999999713-72-3675889989 Q gi|254780607|r 103 QGHAIERNEKLESYLT-CP-EGDLLCPFIN 130 (131) Q Consensus 103 ~~~t~~R~~eL~~~l~-~~-eg~~~~~~~~ 130 (131) ....+.-..+|..+.+ |+ +....||+++ T Consensus 95 i~~l~~~~~~l~~l~~~~~~~~~~~cp~i~ 124 (127) T d1q06a_ 95 IEELQSMRDQLLALANACPGDDSADCPIIE 124 (127) T ss_dssp HHHHHHHHHHHHHHHHTCCC-----CHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHH T ss_conf 999999999999999858899999886868 No 7 >d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=3.42 E-value=1.1e+02 Score=9.14 Aligned_cols=17 Identities=41% Similarity=0.620 Sum_probs=0.0 Q ss_pred HHHHHHHCC--CCCCCCCC Q ss_conf 999999713--72367588 Q gi|254780607|r 110 NEKLESYLT--CPEGDLLC 126 (131) Q Consensus 110 ~~eL~~~l~--~~eg~~~~ 126 (131) ..+|+.+|+ ++||.+.| T Consensus 47 ~~eL~~FL~~~V~e~kL~~ 65 (74) T d1ldda_ 47 LQQLEGYLNTLADEGRLKY 65 (74) T ss_dssp HHHHHHHHHHHHHTTSEEC T ss_pred HHHHHHHHHHHHHCCCEEE T ss_conf 9999999999986696688 No 8 >d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Probab=3.23 E-value=1.2e+02 Score=8.96 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=0.0 Q ss_pred HHHHCCCCCCCCCCCCCC Q ss_conf 999713723675889989 Q gi|254780607|r 113 LESYLTCPEGDLLCPFIN 130 (131) Q Consensus 113 L~~~l~~~eg~~~~~~~~ 130 (131) |+.++... |+...|+|| T Consensus 26 I~~ml~~~-~~~~Ipl~~ 42 (61) T d1fs1b2 26 IKTMLEDL-GMDPVPLPN 42 (61) T ss_dssp HHHHHHHT-CCSSEECTT T ss_pred HHHHHHCC-CCCCCCCCC T ss_conf 99998658-999730697 No 9 >d1ef1c_ a.137.5.1 (C:) Moesin tail domain {Human (Homo sapiens) [TaxId: 9606]} Probab=3.16 E-value=1.2e+02 Score=8.90 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=0.0 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999997 Q gi|254780607|r 106 AIERNEKLESY 116 (131) Q Consensus 106 t~~R~~eL~~~ 116 (131) |++||.+++.+ T Consensus 80 TK~RId~FE~m 90 (90) T d1ef1c_ 80 TKQRIDEFESM 90 (90) T ss_dssp HHHHHHHHHTC T ss_pred HHHHHHHHHCC T ss_conf 99999998529 No 10 >d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]} Probab=3.14 E-value=1.2e+02 Score=8.88 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHCC Q ss_conf 99999999999999713 Q gi|254780607|r 102 LQGHAIERNEKLESYLT 118 (131) Q Consensus 102 ~~~~t~~R~~eL~~~l~ 118 (131) .+..+.+|+.+|+.+|. T Consensus 61 k~~~Yl~RAE~LK~~l~ 77 (77) T d1wr0a1 61 KCTEYLDRAEKLKEYLK 77 (77) T ss_dssp HHHHHHHHHHHHTTTCC T ss_pred HHHHHHHHHHHHHHHHC T ss_conf 99999999999998759 Done!