RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780607|ref|YP_003065020.1| hypothetical protein
CLIBASIA_02470 [Candidatus Liberibacter asiaticus str. psy62]
         (131 letters)



>3gi7_A Secreted protein of unknown function DUF1311; NP_742474.1,
           structural genomics, joint center for structural
           genomics, JCSG; 1.85A {Pseudomonas putida KT2440}
          Length = 122

 Score = 66.3 bits (161), Expect = 2e-12
 Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 8/120 (6%)

Query: 15  AFQSMALNCNETLMQADMNQCTGNSFALVKEKLEATYKKVLEKVEKH------QRELFEK 68
           A +  +  C+          C   +  + + +L++ Y +++E++              E 
Sbjct: 2   ADEEESTPCDNVETDQQTFACAAFNKQVAERELQSAYDELIERMRDQFGDEAGLMSRIEA 61

Query: 69  SQMAWEIYRGSECAFAASGAEEGT-AQSMIYANCLQGHAIERNEKLESYLTCPEGDLLCP 127
           ++  W   R ++C       + G+ A  + + +C+   + ER E L S L     D   P
Sbjct: 62  AEKVWSQLRDADCKVETHAEQPGSNAYQIAWNSCIAQRSDERAEYLRS-LGSQNSDEPAP 120


>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme,
           ATP-binding, DNA-binding, H nucleotide-binding, serine
           protease, stress respo; 2.60A {Escherichia coli}
          Length = 252

 Score = 26.1 bits (57), Expect = 2.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 52  KKVLEKVEKHQRELFEKSQM 71
            +V +++EK QRE +   QM
Sbjct: 222 NRVKKQMEKSQREYYLNEQM 241


>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target
          9257A, PSI-2, protein structure initiative; 2.00A
          {Caulobacter crescentus CB15}
          Length = 417

 Score = 25.1 bits (54), Expect = 4.6
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 1  MCRKIIFALTIIAIAFQSMALNCNET 26
          M R ++FALT +++   S+A   ++ 
Sbjct: 1  MSRPLLFALTALSLTAASLAHAADKK 26


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 25.0 bits (53), Expect = 5.3
 Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 62 QRELFEKSQMAWEIYR-GSECAFAASGAEE 90
          +++  +K Q + ++Y   S  A A     E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47



 Score = 24.6 bits (52), Expect = 7.2
 Identities = 6/12 (50%), Positives = 9/12 (75%), Gaps = 2/12 (16%)

Query: 41 ALVKEKLEATYK 52
          AL  +KL+A+ K
Sbjct: 21 AL--KKLQASLK 30


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 24.5 bits (52), Expect = 7.0
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 4/28 (14%)

Query: 44  KEKLEATYKKVLEKVEKHQRELFEKSQM 71
           +EK     KK LE+  + Q E  EK+++
Sbjct: 113 REKA----KKDLEEWNQRQSEQVEKNKI 136


>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination,
          helicase, hydrolase, DNA repair; HET: DNA; 3.1A
          {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25
          PDB: 3k70_C*
          Length = 1122

 Score = 24.4 bits (52), Expect = 7.2
 Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 35 CTGNSFALVKEKLEATYKKVLEKVEKHQRELFEKSQMAWEIYR 77
               F L    +   + +VL ++ K     F K  M+W++  
Sbjct: 57 AANIDFPLPASFIWDMFVRVLPEIPK--ESAFNKQSMSWKLMT 97


>1v0d_A DNA fragmentation factor 40 kDa subunit; hydrolase, nuclease,
           caspase-activated DNAse; HET: DNA; 2.6A {Mus musculus}
           SCOP: d.4.1.7 PDB: 1f2r_C 1c9f_A 1ibx_A*
          Length = 329

 Score = 24.4 bits (53), Expect = 8.7
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 104 GHAIERNEKLESYLTCPEGDLLC 126
           G   +R  +  S L  PEG   C
Sbjct: 207 GSYFDRGAEASSRLCTPEGWFSC 229


>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET:
          HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X*
          2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A*
          1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A*
          1apx_A*
          Length = 261

 Score = 24.3 bits (52), Expect = 9.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 46 KLEATYKKVLEKVEKHQRELFEKSQMA 72
           + A Y+K +EK +K  R    + + A
Sbjct: 18 TVSADYQKAVEKAKKKLRGFIAEKRCA 44


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,043,944
Number of extensions: 40042
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 15
Length of query: 131
Length of database: 5,693,230
Length adjustment: 82
Effective length of query: 49
Effective length of database: 3,705,222
Effective search space: 181555878
Effective search space used: 181555878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.1 bits)