HHsearch alignment for GI: 254780608 and conserved domain: COG0130
>COG0130 TruB Pseudouridine synthase [Translation, ribosomal structure and biogenesis].
Probab=95.34 E-value=0.0084 Score=37.72 Aligned_cols=81 Identities=19% Similarity=0.259 Sum_probs=50.7
Q ss_pred CEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 56884176531122357853323320110111110013335445342224046212310122210233332211120001
Q gi|254780608|r 107 KIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWSL 186 (346)
Q Consensus 107 ~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~Ai 186 (346)
T Consensus 16 Gil~ldKP~G~tS~~-------~v~~vkkil~--~~K~GH~GTLDP~atGvLpi~ig-~aTKl~~~l~---~~~K~Y~a~ 82 (271)
T COG0130 16 GVINLDKPPGPTSHE-------VVAWVKRILG--VEKAGHGGTLDPLATGVLPICLG-EATKLVQYLL---DADKEYVAT 82 (271)
T ss_pred CEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCCCEEEEEEC-HHHHHHHHHH---HCCCEEEEE
T ss_conf 469840799997799-------9999999858--64056463448743441888834-1474898872---089479999
Q ss_pred CC-CCCCCCCCCCCC
Q ss_conf 34-565410000000
Q gi|254780608|r 187 VW-GIPKNKKECIAN 200 (346)
Q Consensus 187 v~-G~~~~~~~~i~~ 200 (346)
T Consensus 83 ~~lG~~t~~~e~i~~ 97 (271)
T COG0130 83 VRLGDQTDSEEEVRA 97 (271)
T ss_pred EEECCCCCCHHHHHH
T ss_conf 996775799999999