HHsearch alignment for GI: 254780608 and conserved domain: COG1187
>COG1187 RsuA 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].
Probab=99.93 E-value=4.7e-25 Score=178.02 Aligned_cols=208 Identities=18% Similarity=0.236 Sum_probs=140.9
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEEC-CCCCCCCCC-EEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68668999998767889899999998499038878845-112117998-8999356554222332222345543343222
Q gi|254780608|r 17 ENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVK-FNNRIQSGQ-VVRIPPVINALNHIIKEQKILDSSVNLTKHS 94 (346)
Q Consensus 17 ~g~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~vk-~~~~v~~GD-~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (346)
T Consensus 1 ~~~RL~K~La~~-G~~SRr~ae~lI~~G~V~VnG~v~~~~~~~v~~~~~~i~v~g~------------------------ 55 (248)
T COG1187 1 DSMRLNKFLAEA-GVGSRREAEKLIEEGRVTVNGKVATLGGVVVDPDDDVVEVDGK------------------------ 55 (248)
T ss_pred CCCCHHHHHHHC-CCCCHHHHHHHHHCCCEEECCEEECCCCEEECCCCCEEEECCE------------------------
T ss_conf 952068999874-7778899999997398788999922477672798768998998------------------------
Q ss_pred CCCCCEEEE-ECCCEEEECCCCCCEEECC-CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCC
Q ss_conf 345430786-1785688417653112235-78533233201101111100133354453422240462123101222102
Q gi|254780608|r 95 DFLKSILLY-EDSKIYVFNKPAGISVQGG-SGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTE 172 (346)
Q Consensus 95 ~~~~~~Iiy-ED~~livinKPaGl~vhp~-~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~ 172 (346)
T Consensus 56 -----~~~~~~~~~y~llnKP~G~v~s~~D~~gr~tv~D~lp~~-~~~~~~~~pvGRLD~dTeGLLLLTnDG~la~rL~~ 129 (248)
T COG1187 56 -----RIELKEERVYLLLNKPRGYVSSTEDDEGRPTVFDLLPER-LPRKKRLFPVGRLDKDTEGLLLLTNDGELAHRLMH 129 (248)
T ss_pred -----EEECCCCCEEEEEECCCCEEECCCCCCCCCEEEEECCCC-CCCCCCEEECCCCCCCCEEEEEEECCHHHHHHHCC
T ss_conf -----811266646999989987692666889981600025543-46666333426657777127999578789887528
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHC-CCCEEEEEECHHH
Q ss_conf 333322111200013456541000000012234655432111335555555303430101343202-4420457861237
Q gi|254780608|r 173 SFRMRRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQ-KFCWLEMQPHTGR 251 (346)
Q Consensus 173 ~f~~~~v~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~-~~slv~~~l~TGR 251 (346)
T Consensus 130 --P~~~~~K~Y~v~v~g~~~~~~--l~~l~-~----------Gv~l~d~~~~~~~~-~~-l~~~~~~~~s~~~itl~EGr 192 (248)
T COG1187 130 --PSSEVEKEYLVRVEGPVTEED--LEKLR-K----------GVTLDDGETKPAKP-AS-LEKEPGKNNSWLRITLTEGR 192 (248)
T ss_pred --CCCCCCEEEEEEEECCCCHHH--HHHHH-C----------CCEECCCCCCCCEE-EE-EEECCCCCCEEEEEEEECCC
T ss_conf --888997799999925899899--99985-7----------83866735660104-78-98317887469999995784
Q ss_pred HHHHHHHHHHCCCCEECCCCC
Q ss_conf 899999999639800046444
Q gi|254780608|r 252 THQLRVHALHMGCPIVGDHKY 272 (346)
Q Consensus 252 ~HQIRvhl~~~g~PivGD~~Y 272 (346)
T Consensus 193 nrQVRRm~~a~G~~V~~L~R~ 213 (248)
T COG1187 193 NRQVRRMFEAVGLEVLRLKRI 213 (248)
T ss_pred CHHHHHHHHHCCCEEEEEEEE
T ss_conf 789999999849967489999