HHsearch alignment for GI: 254780608 and conserved domain: PRK00020

>PRK00020 truB tRNA pseudouridine synthase B; Provisional.
Probab=96.13  E-value=0.0027  Score=40.83  Aligned_cols=72  Identities=26%  Similarity=0.331  Sum_probs=48.6

Q ss_pred             CCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf             85688417653112235785332332011011111001333544534222404621231012221023333221112000
Q gi|254780608|r  106 SKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS  185 (346)
Q Consensus       106 ~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~A  185 (346)
T Consensus        10 ~G~l~idKP~G~TS~~-------vv~~vkk~l~--~kKvGH~GTLDP~AtGvLiv~vG~a--TKl~~~~~--~~~K~Y~a   76 (244)
T PRK00020         10 DGVLLLDKPVGLSSNH-------ALQRAKRTVD--AAKAGHTGTLDPFATGLLVCCMGRA--TKISGRML--EADKTYQA   76 (244)
T ss_pred             CEEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCCCEEEEEECHH--HHHHHHHC--CCCCEEEE
T ss_conf             7799971699899899-------9999999829--8715778667975514189996737--67659766--89927999


Q ss_pred             CCC-CC
Q ss_conf             134-56
Q gi|254780608|r  186 LVW-GI  190 (346)
Q Consensus       186 iv~-G~  190 (346)
T Consensus        77 ~i~lG~   82 (244)
T PRK00020         77 TLQFGE   82 (244)
T ss_pred             EEEECC
T ss_conf             999787