HHsearch alignment for GI: 254780608 and conserved domain: PRK00020
>PRK00020 truB tRNA pseudouridine synthase B; Provisional.
Probab=96.13 E-value=0.0027 Score=40.83 Aligned_cols=72 Identities=26% Similarity=0.331 Sum_probs=48.6
Q ss_pred CCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 85688417653112235785332332011011111001333544534222404621231012221023333221112000
Q gi|254780608|r 106 SKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS 185 (346)
Q Consensus 106 ~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~A 185 (346)
T Consensus 10 ~G~l~idKP~G~TS~~-------vv~~vkk~l~--~kKvGH~GTLDP~AtGvLiv~vG~a--TKl~~~~~--~~~K~Y~a 76 (244)
T PRK00020 10 DGVLLLDKPVGLSSNH-------ALQRAKRTVD--AAKAGHTGTLDPFATGLLVCCMGRA--TKISGRML--EADKTYQA 76 (244)
T ss_pred CEEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCCCEEEEEECHH--HHHHHHHC--CCCCEEEE
T ss_conf 7799971699899899-------9999999829--8715778667975514189996737--67659766--89927999
Q ss_pred CCC-CC
Q ss_conf 134-56
Q gi|254780608|r 186 LVW-GI 190 (346)
Q Consensus 186 iv~-G~ 190 (346)
T Consensus 77 ~i~lG~ 82 (244)
T PRK00020 77 TLQFGE 82 (244)
T ss_pred EEEECC
T ss_conf 999787