HHsearch alignment for GI: 254780608 and conserved domain: PRK00989
>PRK00989 truB tRNA pseudouridine synthase B; Provisional.
Probab=96.43 E-value=0.0022 Score=41.36 Aligned_cols=71 Identities=20% Similarity=0.244 Sum_probs=47.1
Q ss_pred CCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 85688417653112235785332332011011111001333544534222404621231012221023333221112000
Q gi|254780608|r 106 SKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS 185 (346)
Q Consensus 106 ~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~A 185 (346)
T Consensus 9 ~GillidKP~G~TS~~-------vv~~vkk~l~~--kKvGH~GTLDP~AtGvLiv~iG~~~T-kl~~~~~--~~~K~Y~a 76 (235)
T PRK00989 9 EGILLVDKPQGRTSFS-------LIRALTKLIGV--KKIGHAGTLDPFATGVMVMLIGRKFT-RLSDILL--FEDKEYAA 76 (235)
T ss_pred CCEEEEECCCCCCHHH-------HHHHHHHHHCC--CCCCCCCCCCCCCCCEEEEECCCCCC-CHHHHHC--CCCCEEEE
T ss_conf 8199997899999899-------99999998587--74687867797443528884074511-2789867--57846999
Q ss_pred CCC
Q ss_conf 134
Q gi|254780608|r 186 LVW 188 (346)
Q Consensus 186 iv~ 188 (346)
T Consensus 77 ~i~ 79 (235)
T PRK00989 77 IAH 79 (235)
T ss_pred EEE
T ss_conf 999