HHsearch alignment for GI: 254780608 and conserved domain: PRK00989

>PRK00989 truB tRNA pseudouridine synthase B; Provisional.
Probab=96.43  E-value=0.0022  Score=41.36  Aligned_cols=71  Identities=20%  Similarity=0.244  Sum_probs=47.1

Q ss_pred             CCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf             85688417653112235785332332011011111001333544534222404621231012221023333221112000
Q gi|254780608|r  106 SKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS  185 (346)
Q Consensus       106 ~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~A  185 (346)
T Consensus         9 ~GillidKP~G~TS~~-------vv~~vkk~l~~--kKvGH~GTLDP~AtGvLiv~iG~~~T-kl~~~~~--~~~K~Y~a   76 (235)
T PRK00989          9 EGILLVDKPQGRTSFS-------LIRALTKLIGV--KKIGHAGTLDPFATGVMVMLIGRKFT-RLSDILL--FEDKEYAA   76 (235)
T ss_pred             CCEEEEECCCCCCHHH-------HHHHHHHHHCC--CCCCCCCCCCCCCCCEEEEECCCCCC-CHHHHHC--CCCCEEEE
T ss_conf             8199997899999899-------99999998587--74687867797443528884074511-2789867--57846999


Q ss_pred             CCC
Q ss_conf             134
Q gi|254780608|r  186 LVW  188 (346)
Q Consensus       186 iv~  188 (346)
T Consensus        77 ~i~   79 (235)
T PRK00989         77 IAH   79 (235)
T ss_pred             EEE
T ss_conf             999