HHsearch alignment for GI: 254780608 and conserved domain: PRK02484
>PRK02484 truB tRNA pseudouridine synthase B; Provisional.
Probab=96.05 E-value=0.0031 Score=40.42 Aligned_cols=71 Identities=24% Similarity=0.274 Sum_probs=47.2
Q ss_pred CCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 85688417653112235785332332011011111001333544534222404621231012221023333221112000
Q gi|254780608|r 106 SKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS 185 (346)
Q Consensus 106 ~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~A 185 (346)
T Consensus 3 ~G~l~vdKP~G~TS~~-------vv~~ikk~~~--~kKvGH~GTLDP~AtGvL~v~~G~--aTkl~~~~~~--~~K~Y~~ 69 (293)
T PRK02484 3 NGIINLKKEAGMTSHD-------AVFKLRKILQ--TKKIGHGGTLDPDVVGVLPIAVGK--ATRVIEYMTE--AGKVYEG 69 (293)
T ss_pred CEEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCEEEEEEEECH--HHHHHHHHCC--CCCEEEE
T ss_conf 6699972699999899-------9999999848--985565836798661268999788--7715187664--8938999
Q ss_pred CC-CC
Q ss_conf 13-45
Q gi|254780608|r 186 LV-WG 189 (346)
Q Consensus 186 iv-~G 189 (346)
T Consensus 70 ~~~lG 74 (293)
T PRK02484 70 EVTLG 74 (293)
T ss_pred EEEEC
T ss_conf 99943