HHsearch alignment for GI: 254780608 and conserved domain: PRK02484

>PRK02484 truB tRNA pseudouridine synthase B; Provisional.
Probab=96.05  E-value=0.0031  Score=40.42  Aligned_cols=71  Identities=24%  Similarity=0.274  Sum_probs=47.2

Q ss_pred             CCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf             85688417653112235785332332011011111001333544534222404621231012221023333221112000
Q gi|254780608|r  106 SKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS  185 (346)
Q Consensus       106 ~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~A  185 (346)
T Consensus         3 ~G~l~vdKP~G~TS~~-------vv~~ikk~~~--~kKvGH~GTLDP~AtGvL~v~~G~--aTkl~~~~~~--~~K~Y~~   69 (293)
T PRK02484          3 NGIINLKKEAGMTSHD-------AVFKLRKILQ--TKKIGHGGTLDPDVVGVLPIAVGK--ATRVIEYMTE--AGKVYEG   69 (293)
T ss_pred             CEEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCEEEEEEEECH--HHHHHHHHCC--CCCEEEE
T ss_conf             6699972699999899-------9999999848--985565836798661268999788--7715187664--8938999


Q ss_pred             CC-CC
Q ss_conf             13-45
Q gi|254780608|r  186 LV-WG  189 (346)
Q Consensus       186 iv-~G  189 (346)
T Consensus        70 ~~~lG   74 (293)
T PRK02484         70 EVTLG   74 (293)
T ss_pred             EEEEC
T ss_conf             99943