HHsearch alignment for GI: 254780608 and conserved domain: PRK04099
>PRK04099 truB tRNA pseudouridine synthase B; Provisional.
Probab=95.99 E-value=0.0039 Score=39.85 Aligned_cols=72 Identities=26% Similarity=0.373 Sum_probs=47.4
Q ss_pred CCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 85688417653112235785332332011011111001333544534222404621231012221023333221112000
Q gi|254780608|r 106 SKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS 185 (346)
Q Consensus 106 ~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~A 185 (346)
T Consensus 2 ngil~i~KP~G~TS~~-------vv~~vkk~l~--~kKvGH~GTLDP~AtGvLiv~~G~aT-K-l~~~l~--~~~K~Y~a 68 (272)
T PRK04099 2 NRLFVANKPPGLSSNA-------FLSRLKRKYG--VKKAGFSGTLDPFAKGVLIVAFGQYT-K-LFRFLD--KTPKTYKA 68 (272)
T ss_pred CEEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCCCEEEEEECHHH-H-HHHHHC--CCCCEEEE
T ss_conf 7399961899899899-------9999999849--98446370569866045999988776-3-117667--78827999
Q ss_pred CC-CCC
Q ss_conf 13-456
Q gi|254780608|r 186 LV-WGI 190 (346)
Q Consensus 186 iv-~G~ 190 (346)
T Consensus 69 ~i~lG~ 74 (272)
T PRK04099 69 TLWLGA 74 (272)
T ss_pred EEEECC
T ss_conf 999886