HHsearch alignment for GI: 254780608 and conserved domain: PRK04099

>PRK04099 truB tRNA pseudouridine synthase B; Provisional.
Probab=95.99  E-value=0.0039  Score=39.85  Aligned_cols=72  Identities=26%  Similarity=0.373  Sum_probs=47.4

Q ss_pred             CCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf             85688417653112235785332332011011111001333544534222404621231012221023333221112000
Q gi|254780608|r  106 SKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS  185 (346)
Q Consensus       106 ~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~A  185 (346)
T Consensus         2 ngil~i~KP~G~TS~~-------vv~~vkk~l~--~kKvGH~GTLDP~AtGvLiv~~G~aT-K-l~~~l~--~~~K~Y~a   68 (272)
T PRK04099          2 NRLFVANKPPGLSSNA-------FLSRLKRKYG--VKKAGFSGTLDPFAKGVLIVAFGQYT-K-LFRFLD--KTPKTYKA   68 (272)
T ss_pred             CEEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCCCEEEEEECHHH-H-HHHHHC--CCCCEEEE
T ss_conf             7399961899899899-------9999999849--98446370569866045999988776-3-117667--78827999


Q ss_pred             CC-CCC
Q ss_conf             13-456
Q gi|254780608|r  186 LV-WGI  190 (346)
Q Consensus       186 iv-~G~  190 (346)
T Consensus        69 ~i~lG~   74 (272)
T PRK04099         69 TLWLGA   74 (272)
T ss_pred             EEEECC
T ss_conf             999886