HHsearch alignment for GI: 254780608 and conserved domain: PRK10475
>PRK10475 23S rRNA pseudouridine synthase F; Provisional.
Probab=99.93 E-value=8.4e-25 Score=176.44 Aligned_cols=201 Identities=17% Similarity=0.220 Sum_probs=140.4
Q ss_pred HCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 36866899999876788989999999849903887884511211799889993565542223322223455433432223
Q gi|254780608|r 16 EENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVKFNNRIQSGQVVRIPPVINALNHIIKEQKILDSSVNLTKHSD 95 (346)
Q Consensus 16 ~~g~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~vk~~~~v~~GD~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (346)
T Consensus 4 ~~~~RL~K~LA~~-G~~SRReAe~lI~~GrV~VNGk~v~~g~~V~~~D~V~vdg~~i------------~~~-------- 62 (290)
T PRK10475 4 DSSTRLNKYISES-GICSRREADRYIEQGNVFINGKRATIGDQVKPGDVVKVNGQLI------------EPR-------- 62 (290)
T ss_pred CCCCHHHHHHHHC-CCCHHHHHHHHHHCCCEEECCEECCCCCCCCCCCEEEECCEEC------------CCC--------
T ss_conf 8861499999877-7835999999998597898999957988869999899999891------------233--------
Q ss_pred CCCCEEEEECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCC
Q ss_conf 45430786178568841765311223578533233201101111100133354453422240462123101222102333
Q gi|254780608|r 96 FLKSILLYEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFR 175 (346)
Q Consensus 96 ~~~~~IiyED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~ 175 (346)
T Consensus 63 ------~~~~~~yi~lnKP~G~v~t~~d~~r~ti~d~l~~-----~~rl~pVGRLD~dSeGLLlLTNDG~l~~~l~h--P 129 (290)
T PRK10475 63 ------EAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNH-----SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILR--A 129 (290)
T ss_pred ------CCCCEEEEEEECCCCCCCCCCCCCCCCEEECCCC-----CCCEEECCCCCCCCCCEEEECCCHHHHHHHHC--C
T ss_conf ------6676399999589870677766789864641477-----56350504668777675998598799998735--7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf 32211120001345654100000001223465543211133555555530343010134320244204578612378999
Q gi|254780608|r 176 MRRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQL 255 (346)
Q Consensus 176 ~~~v~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQI 255 (346)
T Consensus 130 ~~~i~K~Y~V~v~g~i~~~~--l~~-l~~G-----v~-------i~g~~~~~~~v---~~~~--~~~~~i~L~EGknRqI 189 (290)
T PRK10475 130 GNDHEKEYLVTVDKPITDEF--IRG-MGAG-----VP-------ILGTVTKKCKV---KKEA--PFVFRITLVQGLNRQI 189 (290)
T ss_pred CCCCCEEEEEEECCCCCHHH--HHH-HHCC-----CE-------ECCEECCEEEE---EECC--CCEEEEEEECCCCHHH
T ss_conf 67895599999898589999--999-8589-----65-------68886011499---9648--9789999986804999
Q ss_pred HHHHHHCCCCEECCC
Q ss_conf 999996398000464
Q gi|254780608|r 256 RVHALHMGCPIVGDH 270 (346)
Q Consensus 256 Rvhl~~~g~PivGD~ 270 (346)
T Consensus 190 RRm~~~~g~~V~~L~ 204 (290)
T PRK10475 190 RRMCEHFGYEVTKLE 204 (290)
T ss_pred HHHHHHCCCEEEEEE
T ss_conf 999998599781789