HHsearch alignment for GI: 254780608 and conserved domain: PRK10700

>PRK10700 23S rRNA pseudouridylate synthase B; Provisional.
Probab=99.91  E-value=5.6e-24  Score=171.26  Aligned_cols=208  Identities=19%  Similarity=0.283  Sum_probs=135.7

Q ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEECCCCCCC--CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             8668999998767889899999998499038878845112117--99889993565542223322223455433432223
Q gi|254780608|r   18 NMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVKFNNRIQ--SGQVVRIPPVINALNHIIKEQKILDSSVNLTKHSD   95 (346)
Q Consensus        18 g~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~vk~~~~v~--~GD~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (346)
T Consensus         2 ~eRL~K~LA~~-G~~SRReae~lI~~GrV~VNG~v~~lg~~v~~~~~~~V~vDG~~i~~----------------~~~~-   63 (291)
T PRK10700          2 SEKLQKVLARA-GHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISV----------------KESA-   63 (291)
T ss_pred             HHHHHHHHHHC-CCCHHHHHHHHHHCCEEEECCEECCCCCEECCCCCCEEEECCEEEEC----------------CCCC-
T ss_conf             17999999987-89439999999986949989999556882658999889999999432----------------4554-


Q ss_pred             CCCCEEEEECCCEEEECCCCCCEEECCC-CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCC
Q ss_conf             4543078617856884176531122357-853323320110111110013335445342224046212310122210233
Q gi|254780608|r   96 FLKSILLYEDSKIYVFNKPAGISVQGGS-GIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESF  174 (346)
Q Consensus        96 ~~~~~IiyED~~livinKPaGl~vhp~~-g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f  174 (346)
T Consensus        64 ----~~~~---~~l~l~KP~G~v~T~~D~~~r~tV~dllp~---~~~~rl~~VGRLD~dT~GLLLlTNDG~La~rL~h--  131 (291)
T PRK10700         64 ----EQIC---RVLAYYKPEGELCTRNDPEGRPTVFDRLPK---LRGARWIAVGRLDVNTCGLLLFTTDGELANRLMH--  131 (291)
T ss_pred             ----CCCE---EEEEEECCCEEECCCCCCCCCCCHHHHCCC---CCCCCEEEECCCCCCCCCCEEECCCHHHHHHHCC--
T ss_conf             ----4301---468998785775466775579837784632---2366455630578888772898387799986248--


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHH
Q ss_conf             33221112000134565410000000122346554321113355555553034301013432024420457861237899
Q gi|254780608|r  175 RMRRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQ  254 (346)
Q Consensus       175 ~~~~v~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQ  254 (346)
T Consensus       132 P~~~v~K~Y~V~v~g~i~~~~--l~~l-~~-----G--v~-----ledg~~~~~~i~~~~~-~~~~~~~~i~L~EGrnrq  195 (291)
T PRK10700        132 PSREVEREYAVRVFGQVDDAK--LRDL-SR-----G--VQ-----LEDGPAAFKTIKFSGG-EGINQWYNVTLTEGRNRE  195 (291)
T ss_pred             CCCCCCEEEEEEECCCCCHHH--HHHH-HC-----C--CE-----ECCCEEEEEEEEEECC-CCCCEEEEEEEEECCCHH
T ss_conf             867987799999888799999--9999-76-----9--77-----6780146799988447-788579999999696889


Q ss_pred             HHHHHHHCCCCEECCCC
Q ss_conf             99999963980004644
Q gi|254780608|r  255 LRVHALHMGCPIVGDHK  271 (346)
Q Consensus       255 IRvhl~~~g~PivGD~~  271 (346)
T Consensus       196 IRRMf~~~G~~V~~LkR  212 (291)
T PRK10700        196 VRRLWEAVGVQVSRLIR  212 (291)
T ss_pred             HHHHHHHCCCEEEEEEE
T ss_conf             99999985997918899