HHsearch alignment for GI: 254780608 and conserved domain: PRK10700
>PRK10700 23S rRNA pseudouridylate synthase B; Provisional.
Probab=99.91 E-value=5.6e-24 Score=171.26 Aligned_cols=208 Identities=19% Similarity=0.283 Sum_probs=135.7
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEECCCCCCC--CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8668999998767889899999998499038878845112117--99889993565542223322223455433432223
Q gi|254780608|r 18 NMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVKFNNRIQ--SGQVVRIPPVINALNHIIKEQKILDSSVNLTKHSD 95 (346)
Q Consensus 18 g~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~vk~~~~v~--~GD~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (346)
T Consensus 2 ~eRL~K~LA~~-G~~SRReae~lI~~GrV~VNG~v~~lg~~v~~~~~~~V~vDG~~i~~----------------~~~~- 63 (291)
T PRK10700 2 SEKLQKVLARA-GHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISV----------------KESA- 63 (291)
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHCCEEEECCEECCCCCEECCCCCCEEEECCEEEEC----------------CCCC-
T ss_conf 17999999987-89439999999986949989999556882658999889999999432----------------4554-
Q ss_pred CCCCEEEEECCCEEEECCCCCCEEECCC-CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCC
Q ss_conf 4543078617856884176531122357-853323320110111110013335445342224046212310122210233
Q gi|254780608|r 96 FLKSILLYEDSKIYVFNKPAGISVQGGS-GIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESF 174 (346)
Q Consensus 96 ~~~~~IiyED~~livinKPaGl~vhp~~-g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f 174 (346)
T Consensus 64 ----~~~~---~~l~l~KP~G~v~T~~D~~~r~tV~dllp~---~~~~rl~~VGRLD~dT~GLLLlTNDG~La~rL~h-- 131 (291)
T PRK10700 64 ----EQIC---RVLAYYKPEGELCTRNDPEGRPTVFDRLPK---LRGARWIAVGRLDVNTCGLLLFTTDGELANRLMH-- 131 (291)
T ss_pred ----CCCE---EEEEEECCCEEECCCCCCCCCCCHHHHCCC---CCCCCEEEECCCCCCCCCCEEECCCHHHHHHHCC--
T ss_conf ----4301---468998785775466775579837784632---2366455630578888772898387799986248--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHH
Q ss_conf 33221112000134565410000000122346554321113355555553034301013432024420457861237899
Q gi|254780608|r 175 RMRRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQ 254 (346)
Q Consensus 175 ~~~~v~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQ 254 (346)
T Consensus 132 P~~~v~K~Y~V~v~g~i~~~~--l~~l-~~-----G--v~-----ledg~~~~~~i~~~~~-~~~~~~~~i~L~EGrnrq 195 (291)
T PRK10700 132 PSREVEREYAVRVFGQVDDAK--LRDL-SR-----G--VQ-----LEDGPAAFKTIKFSGG-EGINQWYNVTLTEGRNRE 195 (291)
T ss_pred CCCCCCEEEEEEECCCCCHHH--HHHH-HC-----C--CE-----ECCCEEEEEEEEEECC-CCCCEEEEEEEEECCCHH
T ss_conf 867987799999888799999--9999-76-----9--77-----6780146799988447-788579999999696889
Q ss_pred HHHHHHHCCCCEECCCC
Q ss_conf 99999963980004644
Q gi|254780608|r 255 LRVHALHMGCPIVGDHK 271 (346)
Q Consensus 255 IRvhl~~~g~PivGD~~ 271 (346)
T Consensus 196 IRRMf~~~G~~V~~LkR 212 (291)
T PRK10700 196 VRRLWEAVGVQVSRLIR 212 (291)
T ss_pred HHHHHHHCCCEEEEEEE
T ss_conf 99999985997918899