HHsearch alignment for GI: 254780608 and conserved domain: TIGR00478
>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells.
Probab=97.15 E-value=0.00057 Score=45.11 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=45.8
Q ss_pred CHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEE-CCCCCCCCCCEEEEECC
Q ss_conf 6899999876788989999999849903887884-51121179988999356
Q gi|254780608|r 20 RLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRV-KFNNRIQSGQVVRIPPV 70 (346)
Q Consensus 20 RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~v-k~~~~v~~GD~I~i~~~ 70 (346)
T Consensus 1 RLD~lLv~rgl~~sR~~Ak~lI~kG~V~VN~~~v~KP~~~v~~~~~i~l~~~ 52 (240)
T TIGR00478 1 RLDILLVKRGLVESREKAKRLILKGEVLVNKKKVDKPSALVDKDAKIELVQN 52 (240)
T ss_pred CCHHHHHHHCHHHHHHHHHHHHHCCCEEECCEEECCCCCEECCCCCEEEECC
T ss_conf 9036776501145789999998739455557652088604416760344147