HHsearch alignment for GI: 254780608 and conserved domain: cd00165
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=98.99 E-value=2.4e-09 Score=78.98 Aligned_cols=69 Identities=26% Similarity=0.376 Sum_probs=59.7
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEE-CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66899999876788989999999849903887884-51121179988999356554222332222345543343222345
Q gi|254780608|r 19 MRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRV-KFNNRIQSGQVVRIPPVINALNHIIKEQKILDSSVNLTKHSDFL 97 (346)
Q Consensus 19 ~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~v-k~~~~v~~GD~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (346)
T Consensus 1 ~RLd~~l~~~~~~~Sr~~a~~~I~~g~V~VNg~~v~~~~~~v~~gd~i~i~~~~~~~----------------------- 57 (70)
T cd00165 1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEE----------------------- 57 (70)
T ss_pred CCHHHHHHHCCCCCCHHHHHHHHHCCEEEECCEEECCCCCCCCCCCEEEECCCCCCC-----------------------
T ss_conf 948899987487158999999998193898999958888898999999987877886-----------------------
Q ss_pred CCEEEEECCCEEEEC
Q ss_conf 430786178568841
Q gi|254780608|r 98 KSILLYEDSKIYVFN 112 (346)
Q Consensus 98 ~~~IiyED~~livin 112 (346)
T Consensus 58 --~i~~~~~~~~~i~ 70 (70)
T cd00165 58 --DIVYEDKKLLVVN 70 (70)
T ss_pred --CEEEECCCEEEEC
T ss_conf --7323269899969