HHsearch alignment for GI: 254780608 and conserved domain: cd00165

>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=98.99  E-value=2.4e-09  Score=78.98  Aligned_cols=69  Identities=26%  Similarity=0.376  Sum_probs=59.7

Q ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEE-CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             66899999876788989999999849903887884-51121179988999356554222332222345543343222345
Q gi|254780608|r   19 MRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRV-KFNNRIQSGQVVRIPPVINALNHIIKEQKILDSSVNLTKHSDFL   97 (346)
Q Consensus        19 ~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~v-k~~~~v~~GD~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (346)
T Consensus         1 ~RLd~~l~~~~~~~Sr~~a~~~I~~g~V~VNg~~v~~~~~~v~~gd~i~i~~~~~~~-----------------------   57 (70)
T cd00165           1 MRLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEE-----------------------   57 (70)
T ss_pred             CCHHHHHHHCCCCCCHHHHHHHHHCCEEEECCEEECCCCCCCCCCCEEEECCCCCCC-----------------------
T ss_conf             948899987487158999999998193898999958888898999999987877886-----------------------


Q ss_pred             CCEEEEECCCEEEEC
Q ss_conf             430786178568841
Q gi|254780608|r   98 KSILLYEDSKIYVFN  112 (346)
Q Consensus        98 ~~~IiyED~~livin  112 (346)
T Consensus        58 --~i~~~~~~~~~i~   70 (70)
T cd00165          58 --DIVYEDKKLLVVN   70 (70)
T ss_pred             --CEEEECCCEEEEC
T ss_conf             --7323269899969