HHsearch alignment for GI: 254780608 and conserved domain: cd00506
>cd00506 PseudoU_synth_TruB_like PseudoU_synth_TruB: Pseudouridine synthase, TruB family. This group consists of eukaryotic, bacterial and archeal pseudouridine synthases similar to Escherichia coli TruB, Saccharomyces cerevisiae Pus4, M. tuberculosis TruB, S. cerevisiae Cbf5 and human dyskerin. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruB, M. tuberculosis TruB and S. cerevisiae Pus4, make psi55 in the T loop of tRNAs. Pus4 catalyses the formation of psi55 in both cytoplasmic and mitochondrial tRNAs. Psi55 is almost universally conserved. S. cerevisiae Cbf5 and human dyskerin are nucleolar proteins that, with the help of guide RNAs, make the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Cbf5/Dyskerin is the catalytic subunit of eukaryotic box H/ACA small nucleolar ribonucleoprotein (snoRNP) particles. Mutations in human dysker
Probab=96.42 E-value=0.002 Score=41.59 Aligned_cols=69 Identities=22% Similarity=0.282 Sum_probs=46.0
Q ss_pred CEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 56884176531122357853323320110111110013335445342224046212310122210233332211120001
Q gi|254780608|r 107 KIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWSL 186 (346)
Q Consensus 107 ~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~Ai 186 (346)
T Consensus 1 Gil~i~KP~G~TS~~-------vv~~vk~~~~--~kKvGH~GTLDP~AtGvL~i~vG~a-TK-~~~~~~~--~~K~Y~~~ 67 (210)
T cd00506 1 GLFAVDKPQGPSSHD-------VVDTIRRIFL--AEKVGHGGTLDPFATGVLVVGIGKA-TK-LLKHLLA--ATKDYTAI 67 (210)
T ss_pred CEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCCCEEEEEECHH-HH-HHHHHCC--CCCEEEEE
T ss_conf 989996799999899-------9999999858--7735768666974524289997788-87-9998755--99778799
Q ss_pred CC
Q ss_conf 34
Q gi|254780608|r 187 VW 188 (346)
Q Consensus 187 v~ 188 (346)
T Consensus 68 ~~ 69 (210)
T cd00506 68 GR 69 (210)
T ss_pred EE
T ss_conf 99