HHsearch alignment for GI: 254780608 and conserved domain: cd02557

>cd02557 PseudoU_synth_ScRIB2 PseudoU_synth_ScRIB2_like: Pseudouridine synthase, Saccharomyces cerevisiae RIB2_like. This group is comprised of eukaryotic and bacterial proteins similar to Saccharomyces cerevisiae RIB2, S. cerevisiae Pus6p and human hRPUDSD2. S. cerevisiae RIB2 displays two distinct catalytic activities. The N-terminal domain of RIB2 is RNA:psi-synthase which makes psi32 on cytoplasmic tRNAs. Psi32 is highly phylogenetically conserved. The C-terminal domain of RIB2 has a DRAP deaminase activity which catalyses the formation of 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione 5'-phosphate from 2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate during riboflavin biosynthesis. S. cerevisiae Pus6p makes the psi31 of cytoplasmic and mitochondrial tRNAs.
Probab=100.00  E-value=0  Score=387.99  Aligned_cols=195  Identities=29%  Similarity=0.351  Sum_probs=161.1

Q ss_pred             CCCEEEEECCCEEEECCCCCCEEECCCCC-CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCC
Q ss_conf             54307861785688417653112235785-33233201101111100133354453422240462123101222102333
Q gi|254780608|r   97 LKSILLYEDSKIYVFNKPAGISVQGGSGI-AYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFR  175 (346)
Q Consensus        97 ~~~~IiyED~~livinKPaGl~vhp~~g~-~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~  175 (346)
T Consensus        14 ~~l~IlyED~~iiVVnKP~Gl~~~p~~~~~~~~l~~~l~~~~~--~~~~~~vHRLDr~TSGllv~Ak~~~a~~~l~~~f~   91 (213)
T cd02557          14 DPIKIVHEDDDLLVVDKPSGIPVHPTGRYRYNTVTEILKSEYG--LTELRPCHRLDRLTSGLLLFAKTSQTASRLQQQIR   91 (213)
T ss_pred             CCCEEEEECCCEEEEECCCCCCEECCCCCCCCHHHHHHHHHCC--CCCCCEEECCCCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf             9988999689999999999986803899872479999997679--98762640568887652899745789999999972


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHH-CCCCEEEEEECHHHHHH
Q ss_conf             32211120001345654100000001223465543211133555555530343010134320-24420457861237899
Q gi|254780608|r  176 MRRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFA-QKFCWLEMQPHTGRTHQ  254 (346)
Q Consensus       176 ~~~v~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~-~~~slv~~~l~TGR~HQ  254 (346)
T Consensus        92 ~~~v~K~Y~Alv~G~~~~~~~~i~~~i~~~~~~----~~~~~~~~~~~k~a~T~~~~l~~~~~~~~sll~~~~~TGRtHQ  167 (213)
T cd02557          92 SREVKKEYLARVKGEFPDGEVVVDQPIGLVSPK----GGLRNDVDEKGKDARTIFKRLSYNGDLNTSVVLCKPITGRTHQ  167 (213)
T ss_pred             CCCCCEEEEEEEEEECCCCEEEEECCCCEECCC----CCEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCHHH
T ss_conf             475635999999726588838995321000776----7258851488864316999999838899899999958788899


Q ss_pred             HHHHHHHCCCCEECCCCCCCCCCCHHCCCCCCCHHHHHHHHEEECCCCCEEEEECCCCH
Q ss_conf             99999963980004644466522100013446241311000437588964999839978
Q gi|254780608|r  255 LRVHALHMGCPIVGDHKYCANFKGNFTSPIQNKLYLHARYMDLPHPEGGRLQITAPLPA  313 (346)
Q Consensus       255 IRvhl~~~g~PivGD~~Yg~~~~~~~~~~~~~r~~LHa~~l~f~hp~~~~~~~~aplP~  313 (346)
T Consensus       168 IRvhla~lG~PIvGD~~YG~-----------~~l~LHA~~~~~~~-----~~f~~~~p~  210 (213)
T cd02557         168 IRVHLQYLGHPIVNDPIYNN-----------LGIYLHALRYEGPD-----WSYETELPD  210 (213)
T ss_pred             HHHHHHHCCCCEECCCCCCC-----------CCEEEEEEEECCCC-----EEEECCCCC
T ss_conf             99999987995718513298-----------56676863541898-----799768997