HHsearch alignment for GI: 254780608 and conserved domain: cd02558
>cd02558 PSRA_1 PSRA_1: Pseudouridine synthase, a subgroup of the RluA family. This group is comprised of bacterial proteins assigned to the RluA family of pseudouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. The RluA family is comprised of proteins related to Escherichia coli RluA.
Probab=100.00 E-value=0 Score=445.42 Aligned_cols=239 Identities=20% Similarity=0.305 Sum_probs=181.7
Q ss_pred CEECCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCEEECCCCC
Q ss_conf 03887884511211799889993565542223322223455433432223454307861785688417653112235785
Q gi|254780608|r 46 VRVDKKRVKFNNRIQSGQVVRIPPVINALNHIIKEQKILDSSVNLTKHSDFLKSILLYEDSKIYVFNKPAGISVQGGSGI 125 (346)
Q Consensus 46 V~VNG~~vk~~~~v~~GD~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IiyED~~livinKPaGl~vhp~~g~ 125 (346)
T Consensus 4 v~~~G~~v~~~~~l~~Gd~v~~~~~~~~e-----------~p-------~p~~l~IlyEDd~llVVnKPaGl~vhP~~~~ 65 (246)
T cd02558 4 VDADGEPLDPDSPYRPGTFVWYYRELPDE-----------PP-------IPFEETILHQDEHLLVADKPHFLPVTPRGRY 65 (246)
T ss_pred ECCCCEECCCCCEECCCCEEEEEECCCCC-----------CC-------CCCCCCEEEECCCEEEEECCCCCCEEECCCC
T ss_conf 88099797999872799999998058999-----------99-------9998998997899999999999857618997
Q ss_pred CCCCCCCHHHCCCCCC-CCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 3323320110111110-01333544534222404621231012221023333221112000134565410000-000122
Q gi|254780608|r 126 AYHIDGFLKSWVDSKG-QKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWSLVWGIPKNKKEC-IANWLL 203 (346)
Q Consensus 126 ~~~~~~~l~~~~~~~~-~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~Aiv~G~~~~~~~~-i~~~~~ 203 (346)
T Consensus 66 ~~--~tl~~~l~~~~~~~~~~~VHRLDr~TSGllv~AK~~~a~~~l~~~f~~r~v~K~Y~Alv~~~~~~~~~~~~~~~~~ 143 (246)
T cd02558 66 VT--ETLLVRLRRQTGNPDLTPAHRLDRLTAGLVLFSKRPETRGAYQTLFARREVSKTYEAVAPYVPALTFPLTVRSRIV 143 (246)
T ss_pred CC--CHHHHHHHHHCCCCCCCEECCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCEEECCCCC
T ss_conf 20--1799999884099865473467998746999988999999999986468452799999983377678636636557
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHHHHHHHHCCCCEECCCCCCCCCCCHHCCC
Q ss_conf 34655432111335555555303430101343202442045786123789999999963980004644466522100013
Q gi|254780608|r 204 KKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRVHALHMGCPIVGDHKYCANFKGNFTSP 283 (346)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQIRvhl~~~g~PivGD~~Yg~~~~~~~~~~ 283 (346)
T Consensus 144 ~~~----~~~--~~~~~~g~~~A~T~~~~l~~~~-~~slv~~~~~TGRtHQIRvHla~iGhPIvGD~~Yg~~~~~~-~~~ 215 (246)
T cd02558 144 KGR----GFF--QAREVEGEPNAETRIELLARRG-GWGLYRLSPHTGKTHQLRVHMAALGVPILNDPFYPVLLDKD-PDD 215 (246)
T ss_pred CCC----CCE--EEECCCCCCCEEEEEEEEEECC-CEEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCC
T ss_conf 887----644--8980589987699999999839-85899999687862999999998799350783777644344-334
Q ss_pred CCCCHHHHHHHHEEECCCCCE-EEEECCCC
Q ss_conf 446241311000437588964-99983997
Q gi|254780608|r 284 IQNKLYLHARYMDLPHPEGGR-LQITAPLP 312 (346)
Q Consensus 284 ~~~r~~LHa~~l~f~hp~~~~-~~~~aplP 312 (346)
T Consensus 216 ~~~~l~LHA~~L~F~HP~T~e~m~F~aP~~ 245 (246)
T cd02558 216 FSRPLQLLAKELEFTDPLTGRPRRFESGRS 245 (246)
T ss_pred CCCCCHHHHCEEEEECCCCCCEEEEECCCC
T ss_conf 463302520784878929989889968998