HHsearch alignment for GI: 254780608 and conserved domain: cd02566
>cd02566 PseudoU_synth_RluE PseudoU_synth_RluE: Pseudouridine synthase, Escherichia coli RluE. This group is comprised of bacterial proteins similar to E. coli RluE. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. Escherichia coli RluE makes psi2457 in 23S RNA. psi2457 is not universally conserved.
Probab=99.79 E-value=2e-19 Score=142.60 Aligned_cols=153 Identities=18% Similarity=0.291 Sum_probs=93.8
Q ss_pred EEEECCCCCCEEECCC--CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 6884176531122357--85332332011011111001333544534222404621231012221023333221112000
Q gi|254780608|r 108 IYVFNKPAGISVQGGS--GIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS 185 (346)
Q Consensus 108 livinKPaGl~vhp~~--g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~A 185 (346)
T Consensus 1 ~i~lnKP~G~v~t~~d~~~~~~~v~d~~~------~~~l~~VGRLD~ds~GLLLlTnDG~l~~~L~h--P~~~i~K~Y~v 72 (168)
T cd02566 1 LILFNKPYGVLSQFTDESEKHKTLKDYID------DPGVYAAGRLDRDSEGLLLLTDDGRLQHRITD--PSFKHPKTYYV 72 (168)
T ss_pred CEEEECCCCEEECCCCCCCCCCEEHHHCC------CCCEEECCCCCCCCCCEEEEECCHHHHHHHHC--CCCCCCEEEEE
T ss_conf 98998999979796688899978244078------88817842667898875998296999998737--76799779999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHHHHHHHHC
Q ss_conf 1345654100000001223465543211133---5555555303430101343202442045786123789999999963
Q gi|254780608|r 186 LVWGIPKNKKECIANWLLKKSHIGGDYVHVV---KQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRVHALHM 262 (346)
Q Consensus 186 iv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQIRvhl~~~ 262 (346)
T Consensus 73 ~v~g~~~~~~--l~~-l~~Gv~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~s~~~i~l~eGknrqIRrm~~~~ 148 (168)
T cd02566 73 QVEGVPTEDA--LEQ-LRNGVELGDGLTLPAKVEKVDEPPWLWEREPPIRFRK-NIPTSWIEITICEGKNRQVRRMTAAV 148 (168)
T ss_pred EECCCCCHHH--HHH-HHCCCEECCEEEEEEEEEEECCCCCCCCCCCCCEEEC-CCCCEEEEEEEEECCHHHHHHHHHHC
T ss_conf 9866799999--999-8779697987864459999426544321256613201-47834899999617219999999985
Q ss_pred CCCEECCCCC
Q ss_conf 9800046444
Q gi|254780608|r 263 GCPIVGDHKY 272 (346)
Q Consensus 263 g~PivGD~~Y 272 (346)
T Consensus 149 g~~V~~L~Rv 158 (168)
T cd02566 149 GFPTLRLIRV 158 (168)
T ss_pred CCEEEEEEEE
T ss_conf 9969589999