HHsearch alignment for GI: 254780608 and conserved domain: cd02572
>cd02572 PseudoU_synth_hDyskerin PseudoU_synth_hDyskerin_Like: Pseudouridine synthase, human dyskerin like. This group consists of eukaryotic and archeal pseudouridine synthases similar to human dyskerin, Saccharomyces cerevisiae Cbf5, and Drosophila melanogaster Mfl (minifly protein). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactor is required. S. cerevisiae Cbf5 and human dyskerin are nucleolar proteins that, with the help of guide RNAs, make the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Cbf5/Dyskerin is the catalytic subunit of eukaryotic box H/ACA small nucleolar ribonucleoprotein (snoRNP) particles. D. melanogaster mfl hosts in its fourth intron, a box H/AC snoRNA gene. In addition dyskerin is likely to have a structural role in the telomerase complex. Mutations in human dyskerin cause X-linked dyskeratosis congenitas. Mutations in Drosophila Mfl r
Probab=95.53 E-value=0.0065 Score=38.42 Aligned_cols=69 Identities=25% Similarity=0.344 Sum_probs=46.5
Q ss_pred CEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 56884176531122357853323320110111110013335445342224046212310122210233332211120001
Q gi|254780608|r 107 KIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWSL 186 (346)
Q Consensus 107 ~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~Ai 186 (346)
T Consensus 3 Gil~idKP~G~TS~~-------vv~~ikk~l~--~kKvGH~GTLDP~AtGvL~v~iG~aT--Kl~~~~~--~~~K~Y~~~ 69 (182)
T cd02572 3 GVINLDKPSGPSSHE-------VVAWIKRILG--VEKTGHSGTLDPKVTGCLPVCIDRAT--RLVKSQQ--EAGKEYVCV 69 (182)
T ss_pred EEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCCCEEEEECCHHH--HHHHHHC--CCCEEEEEE
T ss_conf 899995799999899-------9999999857--66468897779755434776326788--9999867--798089981
Q ss_pred CC
Q ss_conf 34
Q gi|254780608|r 187 VW 188 (346)
Q Consensus 187 v~ 188 (346)
T Consensus 70 ~~ 71 (182)
T cd02572 70 MR 71 (182)
T ss_pred EE
T ss_conf 67