HHsearch alignment for GI: 254780608 and conserved domain: cd02572

>cd02572 PseudoU_synth_hDyskerin PseudoU_synth_hDyskerin_Like: Pseudouridine synthase, human dyskerin like. This group consists of eukaryotic and archeal pseudouridine synthases similar to human dyskerin, Saccharomyces cerevisiae Cbf5, and Drosophila melanogaster Mfl (minifly protein). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactor is required. S. cerevisiae Cbf5 and human dyskerin are nucleolar proteins that, with the help of guide RNAs, make the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Cbf5/Dyskerin is the catalytic subunit of eukaryotic box H/ACA small nucleolar ribonucleoprotein (snoRNP) particles. D. melanogaster mfl hosts in its fourth intron, a box H/AC snoRNA gene. In addition dyskerin is likely to have a structural role in the telomerase complex. Mutations in human dyskerin cause X-linked dyskeratosis congenitas. Mutations in Drosophila Mfl r
Probab=95.53  E-value=0.0065  Score=38.42  Aligned_cols=69  Identities=25%  Similarity=0.344  Sum_probs=46.5

Q ss_pred             CEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             56884176531122357853323320110111110013335445342224046212310122210233332211120001
Q gi|254780608|r  107 KIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWSL  186 (346)
Q Consensus       107 ~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~Ai  186 (346)
T Consensus         3 Gil~idKP~G~TS~~-------vv~~ikk~l~--~kKvGH~GTLDP~AtGvL~v~iG~aT--Kl~~~~~--~~~K~Y~~~   69 (182)
T cd02572           3 GVINLDKPSGPSSHE-------VVAWIKRILG--VEKTGHSGTLDPKVTGCLPVCIDRAT--RLVKSQQ--EAGKEYVCV   69 (182)
T ss_pred             EEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCCCEEEEECCHHH--HHHHHHC--CCCEEEEEE
T ss_conf             899995799999899-------9999999857--66468897779755434776326788--9999867--798089981


Q ss_pred             CC
Q ss_conf             34
Q gi|254780608|r  187 VW  188 (346)
Q Consensus       187 v~  188 (346)
T Consensus        70 ~~   71 (182)
T cd02572          70 MR   71 (182)
T ss_pred             EE
T ss_conf             67