HHsearch alignment for GI: 254780608 and conserved domain: cd02867
>cd02867 PseudoU_synth_TruB_4 PseudoU_synth_TruB_4: Pseudouridine synthase homolog 4. This group consists of Eukaryotic TruB proteins similar to Saccharomyces cerevisiae Pus4. S. cerevisiae Pus4, makes psi55 in the T loop of both cytoplasmic and mitochondrial tRNAs. Psi55 is almost universally conserved. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi).
Probab=94.30 E-value=0.02 Score=35.29 Aligned_cols=41 Identities=20% Similarity=0.198 Sum_probs=28.1
Q ss_pred CCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 333544534222404621231012221023333221112000134
Q gi|254780608|r 144 PRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWSLVW 188 (346)
Q Consensus 144 ~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~Aiv~ 188 (346)
T Consensus 58 vGH~GTLDP~AtGvL~i~~G~a-TK~-~~~~~~--~~K~Y~a~~~ 98 (312)
T cd02867 58 IGHGGTLDPLATGVLVVGVGAG-TKQ-LQDYLS--CSKTYEATGL 98 (312)
T ss_pred EEECCCCCCCCCCEEEEEECHH-HEE-CHHHCC--CCCEEEEEEE
T ss_conf 4026567874603388998754-404-586667--9917999999