HHsearch alignment for GI: 254780608 and conserved domain: cd02868

>cd02868 PseudoU_synth_hTruB2_like PseudoU_synth_ hTRUB2_Like: Pseudouridine synthase, humanTRUB2_like. This group consists of eukaryotic pseudouridine synthases similar to human TruB pseudouridine synthase homolog 2 (TRUB2). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi).

Probab=96.80  E-value=0.00036  Score=46.36  Aligned_cols=75  Identities=20%  Similarity=0.318  Sum_probs=46.3

Q ss_pred             CEEEECCCCCCEEECCCCCCCCCCCCH-HHCCCCCCCCCCCC--CCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCC
Q ss_conf             568841765311223578533233201-10111110013335--445342224046212310122210233332211120
Q gi|254780608|r  107 KIYVFNKPAGISVQGGSGIAYHIDGFL-KSWVDSKGQKPRLT--HRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIY  183 (346)
Q Consensus       107 ~livinKPaGl~vhp~~g~~~~~~~~l-~~~~~~~~~~~~lV--HRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y  183 (346)
T Consensus         1 Gil~v~KP~G~TS~~-------vv~~v~~~l~k~~~~~kk~g~~GTLDP~AtGvLvi~vG~aT--Kl~~~l~~~~~~K~Y   71 (226)
T cd02868           1 GLFAVYKPPGVHWKH-------VRDTIESNLLKYFPEDKVLVGVHRLDAFSSGVLVLGVNHGN--KLLSHLYSNHPTRVY   71 (226)
T ss_pred             CEEEEECCCCCCHHH-------HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEECHHH--HHHHHHHCCCCCEEE
T ss_conf             989997599998999-------99999999976641774696088889756033899988777--256998668997699


Q ss_pred             CCCC-CCC
Q ss_conf             0013-456
Q gi|254780608|r  184 WSLV-WGI  190 (346)
Q Consensus       184 ~Aiv-~G~  190 (346)
T Consensus        72 ~~~~~lG~   79 (226)
T cd02868          72 TIRGLLGK   79 (226)
T ss_pred             EEEEEECC
T ss_conf             99999756