HHsearch alignment for GI: 254780608 and conserved domain: cd02870
>cd02870 PseudoU_synth_RsuA_like Pseudouridine synthases are responsible for the synthesis of pseudouridine from uracil in ribosomal RNA. The RsuA subfamily includes Pseudouridine Synthase similar to Ribosomal small subunit pseudouridine 516 synthase. Most of the proteins in this family are bacterial proteins.
Probab=99.97 E-value=9.7e-32 Score=220.19 Aligned_cols=142 Identities=24% Similarity=0.319 Sum_probs=109.4
Q ss_pred EEEECCCCCCEEECCCCCC-CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 6884176531122357853-323320110111110013335445342224046212310122210233332211120001
Q gi|254780608|r 108 IYVFNKPAGISVQGGSGIA-YHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWSL 186 (346)
Q Consensus 108 livinKPaGl~vhp~~g~~-~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~Ai 186 (346)
T Consensus 1 yi~lnKP~G~~~~~~~~~~~~tv~~ll~----~~~~~l~~V~RLD~~TsGLll~t~d~~~~~~l~~--~~~~i~K~Y~a~ 74 (146)
T cd02870 1 YLLLNKPRGVVSTVRDPEGRPTVLDLLK----DVGERLFPVGRLDYDTEGLLLLTNDGELANRLTH--PRYGVEKTYLVK 74 (146)
T ss_pred CEEEECCCCCEECCCCCCCCCCHHHHHH----HCCCCEEECCCCCCCCCCEEEEECCHHHHHHHHC--CCCCCCEEEEEE
T ss_conf 9899999982861669989985789543----0578672266689778765999579899998754--035424699999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHHHHHHHHCCCCE
Q ss_conf 34565410000000122346554321113355555553034301013432024420457861237899999999639800
Q gi|254780608|r 187 VWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRVHALHMGCPI 266 (346)
Q Consensus 187 v~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQIRvhl~~~g~Pi 266 (346)
T Consensus 75 v~g~~~~~~~--~~~--~---------~--g~~~~~~~~~~~~~~~~~~~~-~~s~l~v~l~tGR~hQIR~h~~~lg~pI 138 (146)
T cd02870 75 VRGVPSEEEL--RRL--R---------A--GVELDDGKTAPAKVKVLSRDP-KNTLLEVTLHEGRNRQVRRMFEAVGHPV 138 (146)
T ss_pred EECCCCHHHH--HHH--H---------C--CEECCCCEEEEEEEEEECCCC-CCEEEEEEECCCCHHHHHHHHHHCCCEE
T ss_conf 9026999999--998--6---------6--645589887214899823789-9599999978994399999999849979
Q ss_pred ECCCC
Q ss_conf 04644
Q gi|254780608|r 267 VGDHK 271 (346)
Q Consensus 267 vGD~~ 271 (346)
T Consensus 139 ~~L~R 143 (146)
T cd02870 139 LRLKR 143 (146)
T ss_pred EEEEE
T ss_conf 67999