HHsearch alignment for GI: 254780608 and conserved domain: pfam00849
>pfam00849 PseudoU_synth_2 RNA pseudouridylate synthase. Members of this family are involved in modifying bases in RNA molecules. They carry out the conversion of uracil bases to pseudouridine. This family includes RluD, a pseudouridylate synthase that converts specific uracils to pseudouridine in 23S rRNA. RluA from E. coli converts bases in both rRNA and tRNA.
Probab=100.00 E-value=3.2e-38 Score=261.04 Aligned_cols=149 Identities=28% Similarity=0.343 Sum_probs=116.7
Q ss_pred EEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 68841765311223578533233201101111100133354453422240462123101222102333322111200013
Q gi|254780608|r 108 IYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWSLV 187 (346)
Q Consensus 108 livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~Aiv 187 (346)
T Consensus 1 ~lvvnKP~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~f~~~~v~K~Y~a~v 80 (151)
T pfam00849 1 YIVVNKPAGVPVHPTDLSDLLSLTELLLVAELGKFRLYPVHRLDRDTSGLLLLAKDGEAANKLNKLFPERKVEKEYLALV 80 (151)
T ss_pred CEEEECCCCCEEECCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 99999999985821899878628886555515997355851778888544786232688888999866535542899999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHH--CCCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 45654100000001223465543211133555555530343010134320--244204578612378999999996
Q gi|254780608|r 188 WGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFA--QKFCWLEMQPHTGRTHQLRVHALH 261 (346)
Q Consensus 188 ~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~--~~~slv~~~l~TGR~HQIRvhl~~ 261 (346)
T Consensus 81 ~g~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~k~a~t~~~~l~~~~~~~~~slv~~~l~TGR~HQIRvhlas 151 (151)
T pfam00849 81 DGPE-EEEGTIKAPIKKDKNKVP----RRKKEELDGKKAVTHLRVLRSGSKIEDVSLVELELVTGRKHQIRAHLAA 151 (151)
T ss_pred ECCC-CCCCEEEEECCCCCCCCE----EEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCHHHHHHHHHCC
T ss_conf 6777-877089810113677772----7987569984242599998872568996999999672837999998669