HHsearch alignment of GI: 254780608 and MMDB domain: 1vio_A_58-243
>1vio_A (A:58-243) Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae}
Probab=100.00 E-value=1.6e-39 Score=268.86 Aligned_cols=178 Identities=15% Similarity=0.112 Sum_probs=134.8
Q ss_pred EECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCC
Q ss_conf 61785688417653112235785332332011011111001333544534222404621231012221023333221112
Q gi|254780608|r 103 YEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKI 182 (346)
Q Consensus 103 yED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~ 182 (346)
|||+++||||||+|++|||+.+...++...+. .....++.+|||||++||||||||||.+++..+..++ +.++|+
T Consensus 2 yed~~~ivinKP~gl~~~~~~~~~~~~~~~l~---~~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~~--~~~~k~ 76 (186)
T 1vio_A 2 IEEGQYFMLNKPQGCVCSNDDGDYPTIYQFFD---YPLAGKLHSAGRLDVDTTGLVLLTDDGQWSHRITSPK--HHCEKT 76 (186)
T ss_dssp SCCCCEEEEEECTTCBSSCCC--CCBGGGGSC---TTGGGGCEESSCCCTTCEEEEEEESCHHHHHHHHCTT--SCCCEE
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCEEEEEEEC---CCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCC--CCCCEE
T ss_conf 22210355402588643334432014542002---4533136540212401221378741775320001112--455201
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHHHHHHHHC
Q ss_conf 00013456541000000012234655432111335555555303430101343202442045786123789999999963
Q gi|254780608|r 183 YWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRVHALHM 262 (346)
Q Consensus 183 Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQIRvhl~~~ 262 (346)
|+|+|.|.+......+........ +. ......+... ...+++++++|.|||+||||+||+++
T Consensus 77 y~~~v~g~~~~~~~~~~~~~~~~~---------------~~--~~~~~~~~~~-~~~~~~~~~~~~tGr~hQIR~h~a~l 138 (186)
T 1vio_A 77 YLVTLADPVEENYSAACAEGILLR---------------GE--KEPTKPAKLE-ILDDYNVNLTISEGRYHQVKRMFAAL 138 (186)
T ss_dssp EEEEESSCCCTTHHHHHHHCCCCT---------------TC--SSCCCCCEEE-ECSSSEEEEEESCCCTTHHHHHHHHT
T ss_pred EEEEEEEECCHHHHHHHHCCEECC---------------CC--CCCEEEEEEC-CCCCCEEEEEECCCCCHHHHHHHHHC
T ss_conf 125998512044788985365616---------------83--0102332201-35684489885057607999999985
Q ss_pred CCCEECCCCCCCCCCCH--H----CCCCCCCHHHHHHHHEEECCCCC
Q ss_conf 98000464446652210--0----01344624131100043758896
Q gi|254780608|r 263 GCPIVGDHKYCANFKGN--F----TSPIQNKLYLHARYMDLPHPEGG 303 (346)
Q Consensus 263 g~PivGD~~Yg~~~~~~--~----~~~~~~r~~LHa~~l~f~hp~~~ 303 (346)
||||+||.+||...... . ......++.||++.+.|.||.+.
T Consensus 139 g~pIvgD~~yg~~~~~~~~~l~~g~~r~l~~~~l~~~~l~~~~~~~~ 185 (186)
T 1vio_A 139 GNKVVGLHRWKIGDVVLDESLEEGEYRPLTQSEIEKLVEGGSHHHHH 185 (186)
T ss_dssp TCCEEEEEEEEETTEECCTTCCTTCEEECCHHHHHHTC---------
T ss_pred CCEEEEEEEEEECCCCCCCCCCCCCEEECCHHHHHHHHHCCCCCCCC
T ss_conf 99793889999887247999999762599999999999579865457