HHsearch alignment of GI: 254780608 and MMDB domain: 2apo_A_51-266
>2apo_A (A:51-266) Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii}
Probab=96.45 E-value=0.002 Score=41.20 Aligned_cols=71 Identities=24% Similarity=0.310 Sum_probs=46.5
Q ss_pred CCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf 78568841765311223578533233201101111100133354453422240462123101222102333322111200
Q gi|254780608|r 105 DSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYW 184 (346)
Q Consensus 105 D~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~ 184 (346)
-+.|++||||+|+.+|. +.+.+.... ...+.+-.+.||-..||+|+++-++.+ +.+..+ ....|+|.
T Consensus 15 ~~G~l~i~KP~g~tS~~-------vv~~~k~~~--~~~kvgh~GtLDp~a~GvLiv~ig~~T-kl~~~~---~~~~K~Y~ 81 (216)
T 2apo_A 15 KYGVVVVDKPRGPTSHE-------VSTWVKKIL--NLDKAGHGGTLDPKVTGVLPVALERAT-KTIPMW---HIPPKEYV 81 (216)
T ss_dssp HTEEEEEEECSSSCHHH-------HHHHHHHHT--TCSCEEESSCCCTTCEEEEEEEEGGGG-GGGGGT---TSSCEEEE
T ss_pred CCCEEEEECCCCCCHHH-------HHHHHHHHH--CCCCCCCCCCCCCCCCCCHHHEECHHH-HHHHHH---CCCCCEEE
T ss_conf 49989997999899899-------999999984--877357787789634365532118653-221775---05882799
Q ss_pred CCCC
Q ss_conf 0134
Q gi|254780608|r 185 SLVW 188 (346)
Q Consensus 185 Aiv~ 188 (346)
|.+.
T Consensus 82 ~~~~ 85 (216)
T 2apo_A 82 CLMH 85 (216)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9999