HHsearch alignment of GI: 254780608 and MMDB domain: 2i82_A_
>2i82_A (A:) Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=100.00 E-value=0 Score=341.44 Aligned_cols=208 Identities=30% Similarity=0.404 Sum_probs=170.7
Q ss_pred CCCCCEEEEECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCC
Q ss_conf 34543078617856884176531122357853323320110111110013335445342224046212310122210233
Q gi|254780608|r 95 DFLKSILLYEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESF 174 (346)
Q Consensus 95 ~~~~~~IiyED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f 174 (346)
......|||||++++|||||+|++|||+.+........+. ......++.+|||||++||||||+||+.++++.|+.+|
T Consensus 8 ~~~~~~Ii~ed~~~ivinKP~gi~~~~~~~~~~~~~~~~~--~~~~~~~l~~vhRLD~~TSGllllak~~~~~~~l~~~~ 85 (217)
T 2i82_A 8 QEPWLVILYQDDHIXVVNKPSGLLSVPGRLEEHKDSVXTR--IQRDYPQAESVHRLDXATSGVIVVALTKAAERELKRQF 85 (217)
T ss_dssp CSSSCCEEEECSSEEEEEECTTSBSSCCSSGGGCCBHHHH--HHHHCTTCEESSCCCTTCEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCHHHHHH--HHHHCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHH
T ss_conf 8999529997998999999999825799887760389997--64410332223455542101589860317777889876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHH
Q ss_conf 33221112000134565410000000122346554321113355555553034301013432024420457861237899
Q gi|254780608|r 175 RMRRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQ 254 (346)
Q Consensus 175 ~~~~v~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQ 254 (346)
.++.+.|+|+|++.|.+....+.+..+............ .....+++.+.+.|.++... ..+|+++|+|.|||+||
T Consensus 86 ~~~~~~k~Y~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~TGr~HQ 161 (217)
T 2i82_A 86 REREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK---VCYETGKPAQTEYEVVEYAA-DNTARVVLKPITGRSHQ 161 (217)
T ss_dssp HTTCSEEEEEEEEESCCSSSEEEEECCEEECGGGTTCEE---ECTTTCBCCEEEEEEEEEET-TTEEEEEEEESSCCTTH
T ss_pred HHCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCE---ECCCCCCCCCCEECCCCCCC-CCCEEEEEEECCCCHHH
T ss_conf 514010368988615446664067410123224332200---01224763001010111123-31047889850262378
Q ss_pred HHHHHHHCCCCEECCCCCCCCCCCHHCCCCCCCHHHHHHHHEEECCCCCE-EEEECCCC
Q ss_conf 99999963980004644466522100013446241311000437588964-99983997
Q gi|254780608|r 255 LRVHALHMGCPIVGDHKYCANFKGNFTSPIQNKLYLHARYMDLPHPEGGR-LQITAPLP 312 (346)
Q Consensus 255 IRvhl~~~g~PivGD~~Yg~~~~~~~~~~~~~r~~LHa~~l~f~hp~~~~-~~~~aplP 312 (346)
||+||+++||||+||.+||...... ...|++|||++|+|+||.+++ +.|.||+|
T Consensus 162 IR~h~a~lg~PIlgD~~Yg~~~~~~----~~~~~~Lha~~l~f~~p~~ge~~~~~~p~P 216 (217)
T 2i82_A 162 LRVHXLALGHPILGDRFYASPEARA----XAPRLLLHAEXLTITHPAYGNSXTFKAPAD 216 (217)
T ss_dssp HHHHHHHTTCCBTTCTTTSCHHHHH----TCSSCCEEEEEEEEECTTTCCEEEEECCCC
T ss_pred HHHHHHHHCCEEECCCCCCCHHHCC----CCCCHHHHCCCCEEECCCCCCEEEEECCCC
T ss_conf 9999997197681676768855636----884666762767889989998899978999