HHsearch alignment of GI: 254780608 and MMDB domain: 2oml_A_
>2oml_A (A:) Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=100.00 E-value=2e-43 Score=293.51 Aligned_cols=184 Identities=20% Similarity=0.177 Sum_probs=149.1
Q ss_pred CCCEEEEECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCC
Q ss_conf 54307861785688417653112235785332332011011111001333544534222404621231012221023333
Q gi|254780608|r 97 LKSILLYEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRM 176 (346)
Q Consensus 97 ~~~~IiyED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~ 176 (346)
.+..|||||++++|||||+|++|||+++..... +..+. ....+.+|||||++|||||||||+.+++..|..+|
T Consensus 2 ~~~~vl~ed~~~ivinKP~g~~~~~~~~~~~~~---~~~~l--~~~~l~~vhRLD~~tsGlll~a~~~~~~~~l~~~~-- 74 (189)
T 2oml_A 2 TRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT---LKEFI--PVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPG-- 74 (189)
T ss_dssp ------CCCCCEEEEEECTTBCSCSSCCTTCBC---GGGTC--CCSSCEESSCCCTTCEEEEEEESCHHHHHHHHSTT--
T ss_pred CCCCCCCCCCEEEEEECCCCEEEECCCCCCCCC---HHHHC--CCCCCEECCCCCCCCCCEEEEECCCHHHHHCCCCC--
T ss_conf 865778899889999899983860779988865---88963--71253473102612000799932530222103123--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHHH
Q ss_conf 22111200013456541000000012234655432111335555555303430101343202442045786123789999
Q gi|254780608|r 177 RRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLR 256 (346)
Q Consensus 177 ~~v~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQIR 256 (346)
+.+.|+|+|+|.|.+....+.+..+....................+++.+.+.|.++... ..++++++.|.|||+||||
T Consensus 75 ~~i~k~Y~a~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~tGr~hQIR 153 (189)
T 2oml_A 75 KRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKS-IPTSWLKITLYEGRNRQVR 153 (189)
T ss_dssp SCCCEEEEEEEESCCCHHHHHHHHHCCEETTEECCCCEEEEECCCTTCCCCSSCCC-CTT-SCEEEEEEEESCCCTTHHH
T ss_pred EEEEEEEEEEEECCCCHHHHHHHHCCCEECCCEEEEEEEEEECCCCCCEEEEEEEEEEEE-CCCCEEEEEEECCCHHHHH
T ss_conf 037789999993279989999986494507851576579995356641024557888740-5650799999459779999
Q ss_pred HHHHHCCCCEECCCCCCCCCCCHHCCCCCCCHHHHHHH
Q ss_conf 99996398000464446652210001344624131100
Q gi|254780608|r 257 VHALHMGCPIVGDHKYCANFKGNFTSPIQNKLYLHARY 294 (346)
Q Consensus 257 vhl~~~g~PivGD~~Yg~~~~~~~~~~~~~r~~LHa~~ 294 (346)
+||+++||||+||.+||.... ...+++||||+
T Consensus 154 ~hl~~lg~pIvgD~~Y~~~~~------~~~~l~l~~~R 185 (189)
T 2oml_A 154 RMTAHVGFPTLRLIRYAMGDY------SLDNLANGEWR 185 (189)
T ss_dssp HHHHHTTCCEEEEEEEEETTE------ECTTCCTTCEE
T ss_pred HHHHHCCCEEEEEEEEEECCE------ECCCCCCCCCE
T ss_conf 999986996989899999998------50788998837