HHsearch alignment of GI: 254780608 and MMDB domain: 3dh3_A_64-290
>3dh3_A (A:64-290) Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=100.00 E-value=0 Score=317.68 Aligned_cols=197 Identities=13% Similarity=0.024 Sum_probs=160.3
Q ss_pred ECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCC
Q ss_conf 17856884176531122357853323320110111110013335445342224046212310122210233332211120
Q gi|254780608|r 104 EDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIY 183 (346)
Q Consensus 104 ED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y 183 (346)
||+++||||||+||+|||+++...++.+++..+ .++.+|||||++|||||||||+.+++..++.+ .+.++|+|
T Consensus 2 Ed~~~ivinKP~Gl~~~~~~~~~~~l~~~l~~~-----~~l~~vhRLD~~TSGlll~ak~~~~~~~l~~~--~~~i~K~Y 74 (227)
T 3dh3_A 2 EDLVLIALNKPVGIVSTTEDGERDNIVDFVNHS-----KRVFPIGRLDKDSQGLIFLTNHGDLVNKILRA--GNDHEKEY 74 (227)
T ss_dssp GGCCEEEEEECTTCBCCCCSSCTTBHHHHHTCS-----SCCEESSCCCTTCEEEEEEESCTTHHHHHHCG--GGCCCEEE
T ss_pred CCEEEEECCCCCCEEECCCCCCCCCCHHHCCCC-----CCCCCCCCCCCCCCCEEEEECCCHHHHHHHHH--HCCCCCCC
T ss_conf 311356436665212033347777501101344-----43122465676763148994398799888763--12443221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHHHHHHHHCC
Q ss_conf 00134565410000000122346554321113355555553034301013432024420457861237899999999639
Q gi|254780608|r 184 WSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRVHALHMG 263 (346)
Q Consensus 184 ~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQIRvhl~~~g 263 (346)
+|+|.|.+....+.+..+.... ...+.+.+.... ..++++++.+.|||+||||+||+++|
T Consensus 75 ~a~v~G~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~-~~~~~~~~~~~tGr~hQIR~h~a~~g 134 (227)
T 3dh3_A 75 LVTVDKPITEEFIRGMSAGVPI-------------------LGTVTKKCKVKK-EAPFVFRITLVQGLNRQIRRMCEHFG 134 (227)
T ss_dssp EEEESSCCCHHHHHHHHTCCBC-------------------SSSBCCCCEEEE-CSSSEEEEEESCCCTTHHHHHHHHTT
T ss_pred CEEECCCCCHHHHHHHHCCCEE-------------------CCEEEEEEEEEE-CCCCEEEEEECCCCCHHHHHHHHHCC
T ss_conf 1276057999999999759984-------------------565744257752-26725899925885259999999879
Q ss_pred CCEECCCCCCCCCCCH-----------------HCCCCCCCHHHHHHHHEEECCCCCE-EEEECCCCHHHHHHHHHHCCC
Q ss_conf 8000464446652210-----------------0013446241311000437588964-999839978999999980898
Q gi|254780608|r 264 CPIVGDHKYCANFKGN-----------------FTSPIQNKLYLHARYMDLPHPEGGR-LQITAPLPAHMVKTWDSLGFK 325 (346)
Q Consensus 264 ~PivGD~~Yg~~~~~~-----------------~~~~~~~r~~LHa~~l~f~hp~~~~-~~~~aplP~~f~~~l~~l~~~ 325 (346)
|||+||.+||...... .......+++|||+++.|+||.+++ ++|+||+|++|.++++.|+..
T Consensus 135 ~pI~gd~~y~~~~~~l~~l~~g~~r~l~~~e~~~~~~~~~~~~Lha~~l~f~~p~~~e~~~~~ap~p~~~~~~~~~l~~~ 214 (227)
T 3dh3_A 135 YEVKKLERTRIMNVSLSGIPLGEWRDLTDDELIDLFKLIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNG 214 (227)
T ss_dssp CCEEEEEEEEETTEECTTCCTTCEEECCHHHHHHHHHTCCCCSSCC----------------------------------
T ss_pred CEEEEEEEEEECCEECCCCCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 96766999998787748979977388999999999987632456678876678877666788777777878889988899
Q ss_pred CC
Q ss_conf 75
Q gi|254780608|r 326 YD 327 (346)
Q Consensus 326 ~d 327 (346)
.+
T Consensus 215 ~~ 216 (227)
T 3dh3_A 215 KR 216 (227)
T ss_dssp --
T ss_pred CC
T ss_conf 99